GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000010-TA|BGIBMGA000010-PA|IPR012464|Protein of unknown
function DUF1676
         (240 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)                    35   0.069
SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)                  32   0.49 
SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6)                28   7.9  
SB_45529| Best HMM Match : DUF983 (HMM E-Value=0.48)                   28   7.9  
SB_44603| Best HMM Match : Xan_ur_permease (HMM E-Value=0.00049)       28   7.9  

>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
          Length = 847

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 40  DGDVTLCLKEKALRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVE 99
           DG  T+ LKEK +  ++ L+ K E     GV+  S+ S   A+ LE L +E + +    +
Sbjct: 718 DGKRTIALKEKDIE-IQKLQEKLE-----GVSKASEQSKTHAQKLESLNKEQENKLVDAQ 771

Query: 100 SRLVDGVADFLENYVVQFKLPSSAVEGMRRSLDE 133
           SRL +  A+  +   +  KL    +E + + ++E
Sbjct: 772 SRLEESEAEGRKTAHL-LKLKEQKIESLEKKVEE 804


>SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)
          Length = 788

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 50  KALRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADF 109
           + LR  ++L    E  +   + ++ KG+  +A     L  +P+A E  ++ RL  G+   
Sbjct: 152 RVLRITDSLLHGEEEEMRGWLLVEQKGALGTATVTRSLDTDPQASELVIQVRLAGGIGVS 211

Query: 110 LENYV 114
           + NYV
Sbjct: 212 VVNYV 216


>SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6)
          Length = 782

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 19  AEQDSDPNILGSVLGVVKECVDGDV-TLCLKEKALRYVETLRSKREITL-VDGVTLDSKG 76
           AE  ++P  + SV G+  E  +G++ +LC ++ ALR        RE  +  DG  +D   
Sbjct: 102 AELPTEPPAIASVHGLDFEA-EGELRSLCQEKAALRATSAATKTREAKVREDGAAIDRAF 160

Query: 77  SPRSARALEPLPEEPKAREAQVES 100
           +  +    + LP++  A +   E+
Sbjct: 161 TDETGYDPQWLPDDHPAYQEYTEA 184


>SB_45529| Best HMM Match : DUF983 (HMM E-Value=0.48)
          Length = 294

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 2  KCLVVLMVIGVAWAMPAAEQDSDPNILGSVLGVVKECVDGDVT 44
          +CL+VL+  GV W++   E     N+ G  + +V     G +T
Sbjct: 55 RCLIVLVSYGVLWSITGHEMLPGGNLFGIFIILVCAAFGGFIT 97


>SB_44603| Best HMM Match : Xan_ur_permease (HMM E-Value=0.00049)
          Length = 453

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 73  DSKGSPRSARALEPLPEEPKAREAQVESRLVDGVAD 108
           ++ G+   A  +EP+P+E    +A+VE   +DG  D
Sbjct: 376 NTDGATNVAIVMEPIPDEKHDGKAEVEGAKLDGKLD 411


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,105,990
Number of Sequences: 59808
Number of extensions: 210586
Number of successful extensions: 566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 5
length of query: 240
length of database: 16,821,457
effective HSP length: 80
effective length of query: 160
effective length of database: 12,036,817
effective search space: 1925890720
effective search space used: 1925890720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)