GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000010-TA|BGIBMGA000010-PA|IPR012464|Protein of unknown
function DUF1676
         (240 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical ...    30   1.7  
U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    28   5.2  

>AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.8 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 58  LRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLEN 112
           L  + E+ L D V  D K  PR  R    LPE  ++R    +++ +    DF EN
Sbjct: 393 LEHEAELNLTDNVITDPKMLPRGKRPEFELPEH-RSRLEDAKAQFLKEFGDFEEN 446


>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
          (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 17 PAAEQDSDPNI---LGSVLGVVKECVDGDVTLCLKEKALRY 54
          PAA+   DP     L +VLG+ K   D ++    ++ ALRY
Sbjct: 25 PAADHSHDPKKGLHLYNVLGIQKNATDDEIKKAYRKLALRY 65


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,437,263
Number of Sequences: 27539
Number of extensions: 150086
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 2
length of query: 240
length of database: 12,573,161
effective HSP length: 79
effective length of query: 161
effective length of database: 10,397,580
effective search space: 1674010380
effective search space used: 1674010380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)