GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000010-TA|BGIBMGA000010-PA|IPR012464|Protein of unknown
function DUF1676
         (240 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 190 KKLLASKHTETSYEVVAHPHHEEHYASSGH 219
           +KLLA K TE   ++ A   H++    + H
Sbjct: 404 EKLLAFKMTEQQQQMQAQQQHQQQQQQTQH 433


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 207 HPHHEEHYASSGH 219
           H HH  H+A  GH
Sbjct: 280 HVHHANHHAILGH 292


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 212  EHYASSGHGWGRSIDDAQNMAYS 234
            +HY S G    RS+  A+N+  S
Sbjct: 1832 DHYGSRGSVGRRSVGSARNIPVS 1854


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,489
Number of Sequences: 429
Number of extensions: 1600
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 240
length of database: 140,377
effective HSP length: 56
effective length of query: 184
effective length of database: 116,353
effective search space: 21408952
effective search space used: 21408952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)