Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000009-TA|BGIBMGA000009-PA|IPR012464|Protein of unknown
function DUF1676
         (236 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)            29   4.4  
SB_50523| Best HMM Match : Ras (HMM E-Value=0)                         28   7.7  
SB_17100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 27  RSSEDSFLGDLKTAYDTYKDCTGAELSNCLKRKLAKALSKVANTEE 72
           ++S + F GDLKT  D Y  C    +    K +  K   + A  E+
Sbjct: 680 KTSMEEFFGDLKTFMDQYSQCKKENMKRQEKEEKEKRAKERAEKEK 725


>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
          Length = 1232

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 101 GLDESSLDNIIMDKIFRFMQTHTVQ-FNFPTGSDVQETEEGRD 142
           G DE  LD ++  K+  FMQ+   Q F+       QETE G +
Sbjct: 245 GQDEEELDKVVSKKLTSFMQSLMGQYFSIVESRIEQETETGNN 287


>SB_50523| Best HMM Match : Ras (HMM E-Value=0)
          Length = 154

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 102 LDESSLDNIIMDKIFRFMQTHTVQFNFPTGSDVQETEEGRDKRKKL 147
           ++ S+L NI ++K F  +    +    P    V+ETE+G+ K+KK+
Sbjct: 96  IETSALSNINVEKSFVVLTEDILNAVCPP--TVEETEKGKGKKKKM 139


>SB_17100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 31 DSFLGDLKTAYDTYKDCTGAELS--NCLKRKLAKALSKVANTEELSIPG 77
          D FLGD    Y+TY D    E++  + L R  ++  S +  T + +I G
Sbjct: 18 DEFLGDAYHKYNTYDDDDDMEMNDDDLLSRDTSRVTSGLTFTRKSNISG 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,576,409
Number of Sequences: 59808
Number of extensions: 163573
Number of successful extensions: 352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 4
length of query: 236
length of database: 16,821,457
effective HSP length: 80
effective length of query: 156
effective length of database: 12,036,817
effective search space: 1877743452
effective search space used: 1877743452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)