Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000009-TA|BGIBMGA000009-PA|IPR012464|Protein of unknown
function DUF1676
         (236 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58870.1 68418.m07376 FtsH protease, putative contains simila...    29   2.7  
At3g47060.1 68416.m05110 FtsH protease, putative contains simila...    29   2.7  
At1g72990.1 68414.m08441 glycosyl hydrolase family 35 protein si...    28   4.8  

>At5g58870.1 68418.m07376 FtsH protease, putative contains
           similarity to cell division protein FtsH homolog 3
           SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
           sp.}
          Length = 806

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 201 GGHEAHEVVVSAGHSASGWSRSLEKAHDLAYKAYA 235
           GG  A EVV S G  ++G    + +A D+AYKA A
Sbjct: 657 GGRAAEEVVYS-GRISTGALDDIRRATDMAYKAVA 690


>At3g47060.1 68416.m05110 FtsH protease, putative contains
           similarity to FtsH protease GI:13183728 from [Medicago
           sativa]
          Length = 802

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 201 GGHEAHEVVVSAGHSASGWSRSLEKAHDLAYKAYA 235
           GG  A EVV S G  ++G    + +A D+AYKA A
Sbjct: 653 GGRAAEEVVYS-GRISTGAFDDIRRATDMAYKAVA 686


>At1g72990.1 68414.m08441 glycosyl hydrolase family 35 protein
           similar to beta-galactosidase GI:2289790 from [Bacillus
           circulans]; contains Pfam profile PF01301: Glycosyl
           hydrolases family 35
          Length = 697

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 140 GRDKRKKLAPMLAIPILVIGMMVP 163
           GR +R +LA ML + ++V+G+ VP
Sbjct: 10  GRQRRHQLASMLLLVLVVVGIYVP 33


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,080,730
Number of Sequences: 28952
Number of extensions: 130613
Number of successful extensions: 310
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 3
length of query: 236
length of database: 12,070,560
effective HSP length: 79
effective length of query: 157
effective length of database: 9,783,352
effective search space: 1535986264
effective search space used: 1535986264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)