GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000009-TA|BGIBMGA000009-PA|IPR012464|Protein of unknown
function DUF1676
         (236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    32   0.063
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    25   9.6  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    25   9.6  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 26  PRSSEDSFLGDLKTAY--DTYKDCTGAELSNCLKRKLA 61
           P++ ED+ + DL+ A+  +   D TG E++ C+K K+A
Sbjct: 283 PKTEEDTVMMDLRLAFSPNDISDLTGREIAACIKPKIA 320


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 182 LALVLAGIIGLKKLLSPNGGGHEA 205
           L L+L G++  + LLSPN    EA
Sbjct: 6   LFLLLGGVVSAESLLSPNKRSKEA 29


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 201 GGHEAHEVVVSAGHSASGWSRSLEKAHDL 229
           G H A E ++ AG+   G  RS+EKA +L
Sbjct: 16  GAHVA-EQLLQAGYRVRGTVRSMEKADEL 43


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 765,319
Number of Sequences: 5004
Number of extensions: 23514
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 3
length of query: 236
length of database: 2,362,478
effective HSP length: 71
effective length of query: 165
effective length of database: 2,007,194
effective search space: 331187010
effective search space used: 331187010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)