GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000009-TA|BGIBMGA000009-PA|IPR012464|Protein of unknown
function DUF1676
         (236 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0136 + 26174965-26175849,26176965-26177030,26177124-261772...    30   1.9  
02_03_0090 - 15100386-15100414,15100740-15100827,15101025-151010...    29   3.3  

>02_05_0136 +
           26174965-26175849,26176965-26177030,26177124-26177258,
           26177369-26177434,26177516-26177701,26177777-26177863,
           26177985-26178098,26178174-26178298,26178375-26178483,
           26179298-26179423,26179511-26179831,26180146-26180269,
           26180405-26180529
          Length = 822

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 201 GGHEAHEVVVSAGHSASGWSRSLEKAHDLAYKAYA 235
           GG  A EVV+S G  ++G    + +A D+AYKA A
Sbjct: 674 GGRAAEEVVLS-GRVSTGALDDIRRATDMAYKAVA 707


>02_03_0090 -
           15100386-15100414,15100740-15100827,15101025-15101078,
           15101184-15101243,15101352-15101462,15103213-15103287,
           15103845-15103901
          Length = 157

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 195 LLSPNGGGHEAHEVVVSAGHSASGWS 220
           LL+P   GHE  E      HS SGWS
Sbjct: 118 LLAPIYSGHEREEKTSLIAHSLSGWS 143


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,141,144
Number of Sequences: 37544
Number of extensions: 164756
Number of successful extensions: 396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 2
length of query: 236
length of database: 14,793,348
effective HSP length: 80
effective length of query: 156
effective length of database: 11,789,828
effective search space: 1839213168
effective search space used: 1839213168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)