GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000009-TA|BGIBMGA000009-PA|IPR012464|Protein of unknown
function DUF1676
         (236 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    27   8.9  
AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical...    27   8.9  

>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
           protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 26  PRSSEDSFLGDLKTAYDTYKD 46
           PRSS  SFL  LKT   T KD
Sbjct: 617 PRSSSTSFLESLKTCQKTLKD 637


>AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical
           protein Y73F8A.24 protein.
          Length = 481

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 127 NFPTGSDVQETEEGRDKRKKL 147
           +FPT SDV+ET+E  D+ K L
Sbjct: 68  SFPTASDVEETKEIEDQVKLL 88


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,130,059
Number of Sequences: 27539
Number of extensions: 130393
Number of successful extensions: 269
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 2
length of query: 236
length of database: 12,573,161
effective HSP length: 79
effective length of query: 157
effective length of database: 10,397,580
effective search space: 1632420060
effective search space used: 1632420060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)