Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000008-TA|BGIBMGA000008-PA|IPR012464|Protein of unknown
function DUF1676
         (253 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49630| Best HMM Match : UBX (HMM E-Value=3.8)                       30   2.1  
SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)                       30   2.1  
SB_6041| Best HMM Match : UBX (HMM E-Value=1)                          29   2.8  
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_17699| Best HMM Match : CsbD (HMM E-Value=0.014)                    29   3.7  
SB_19997| Best HMM Match : B12-binding_2 (HMM E-Value=0.68)            29   4.9  

>SB_49630| Best HMM Match : UBX (HMM E-Value=3.8)
          Length = 215

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 52  FVDRAAR-LESLPIADGVTLVRRPEAERAF 80
           FVDR ++ LE +P  D  T++  PE +RAF
Sbjct: 133 FVDRVSQALEEIPARDTPTVIELPEMKRAF 162


>SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 979

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 52  FVDRAAR-LESLPIADGVTLVRRPEAERAF 80
           FVDR ++ LE +P  D  T++  PE +RAF
Sbjct: 935 FVDRVSQALEEIPARDTPTVIELPEMKRAF 964


>SB_6041| Best HMM Match : UBX (HMM E-Value=1)
          Length = 651

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 52  FVDRAAR-LESLPIADGVTLVRRPEAERAF 80
           FVDR ++ LE +P  D  T++  PE +RAF
Sbjct: 447 FVDRLSQALEEIPARDTPTVIELPEMKRAF 476


>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1386

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 82  SSSPEGDLNSLSSDQVDKYLQDATSKLMQTHRVVIAPQTFG--EDVGRSINEARGKLKKM 139
           ++S +   NSL  +Q    ++    K+ QTH  +   QT G  E     I + RGK+++ 
Sbjct: 733 ANSRQDRANSLKIEQTHGKIEQTHGKIEQTHGKI--EQTHGKIEQTRGKIEQTRGKIEQT 790

Query: 140 MGPI 143
            G I
Sbjct: 791 RGKI 794


>SB_17699| Best HMM Match : CsbD (HMM E-Value=0.014)
          Length = 178

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 82  SSSPEGDLNSLSSDQVDKYLQDATSKLMQTHRVVIAPQTFG--EDVGRSINEARGKLKKM 139
           ++S +   NSL  +Q    ++    K+ QTH  +   QT G  E     I + RGK+++ 
Sbjct: 63  ANSRQDRANSLKIEQTHGKIEQTHGKIEQTHGKI--EQTHGKIEQTRGKIEQTRGKIEQT 120

Query: 140 MGPI 143
            G I
Sbjct: 121 RGKI 124


>SB_19997| Best HMM Match : B12-binding_2 (HMM E-Value=0.68)
          Length = 413

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 54  DRAARLESLPIADGVTLVRRPEAERAFPSSSPEGDLNSLSSDQVDKYLQDAT 105
           ++  + ++L    G+   RRPE + +FP           +S  ++ +L DAT
Sbjct: 86  EKVLKSQALRYMKGIADARRPEMKSSFPDRDRNALREHFTSVSLENFLADAT 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,467,474
Number of Sequences: 59808
Number of extensions: 217571
Number of successful extensions: 586
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 8
length of query: 253
length of database: 16,821,457
effective HSP length: 80
effective length of query: 173
effective length of database: 12,036,817
effective search space: 2082369341
effective search space used: 2082369341
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)