GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000008-TA|BGIBMGA000008-PA|IPR012464|Protein of unknown
function DUF1676
         (253 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.7  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    23   3.0  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    23   3.0  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   6.9  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   6.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 204 HPQVSQSHTYSSSHYGGDFDSTGPGGHYRR 233
           HP    S+ YSS    G +D   P G   R
Sbjct: 126 HPYTVISNGYSSPMSSGSYDPYSPNGKIGR 155


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 95  DQVDKYLQDATSKLMQTHRVVI 116
           D VDK LQDA       H +V+
Sbjct: 143 DPVDKVLQDAKIGKSAVHEIVL 164


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 95  DQVDKYLQDATSKLMQTHRVVI 116
           D VDK LQDA       H +V+
Sbjct: 143 DPVDKVLQDAKIGKSAVHEIVL 164


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 195 EKTTYEIVKHPQVSQSHTYSSSHY 218
           EKTTYE  ++ Q     TY  S +
Sbjct: 29  EKTTYEYYENNQALPPITYPPSDW 52


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 195 EKTTYEIVKHPQVSQSHTYSSSHY 218
           EKTTYE  ++ Q     TY  S +
Sbjct: 20  EKTTYEYYENNQALPPITYPPSDW 43


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,827
Number of Sequences: 317
Number of extensions: 1378
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 253
length of database: 114,650
effective HSP length: 55
effective length of query: 198
effective length of database: 97,215
effective search space: 19248570
effective search space used: 19248570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)