GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000008-TA|BGIBMGA000008-PA|IPR012464|Protein of unknown
function DUF1676
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    28   1.1  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     28   1.5  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.6  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   2.6  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   4.6  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   8.0  

>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/71 (26%), Positives = 31/71 (43%)

Query: 37  PSKDILTCFKFQAAKFVDRAARLESLPIADGVTLVRRPEAERAFPSSSPEGDLNSLSSDQ 96
           PS D LT   F        +   +S  ++  +    +P+A  A  ++  E   +SLSS  
Sbjct: 119 PSNDALTESYFFRQPASKYSITQDSPRVSSTIAYSFKPKASIALNTTKSEATRSSLSSSS 178

Query: 97  VDKYLQDATSK 107
            D YL+   S+
Sbjct: 179 FDSYLRPNVSR 189


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 34  GKYPSKDILTCFKFQAAKFVDRAARLESLPIADGVTLVRRPEAERAFPSSSPEGDLNSLS 93
           G  P+ D       +  K  D    +  LP+  GV  +   E++  F      GD++ +S
Sbjct: 152 GSVPTFDFHVFSPDKPFKLDDIDISVTPLPVHHGVYFIEGKESQTYFCMGFRVGDMSYIS 211

Query: 94  SDQVDKYLQDATSKLMQTHRVVI 116
                 Y+   T KLM+   VV+
Sbjct: 212 D---CNYVPPTTKKLMEGSNVVV 231


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 82  SSSPEGDLNSLSSDQVDKYLQDATSKLMQTHRVVIAPQTFGEDV 125
           SS  +   NS++S +V KY ++  + + Q H   + P +FG  +
Sbjct: 74  SSKSKVSYNSITS-RVTKYFEEKNNSVDQLHSESLTPLSFGHTI 116


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 198 TYEIVKHPQVSQSHTYSSSHYGGDFDSTGPGGHY 231
           T ++ ++ ++ + H   S  Y   F+ TG  GHY
Sbjct: 924 TKDLGRNVRIDKEHVPESHRYPSLFEGTGVNGHY 957


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 77  ERAFPSSSPEGDLNSLSSDQVDKYLQDATSKLMQTHRVVIAPQTFGEDVGRSINEARGK 135
           +R+F SSS +   NS+S + +DK L +     M  H          +D   SI  A  K
Sbjct: 196 DRSFRSSSKKSSNNSISHEDLDKELDEYA---MSFHAASTVSSHSSQDFTPSIANAHEK 251


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 125 VGRSINEARGKLKKMMGPIIAGLAIKGGFVAIAF 158
           +G  I  A G L K   P +AG +I G   +IAF
Sbjct: 417 IGACIGRAVGTLLKSRFPSLAGTSIYGVIGSIAF 450


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 861,584
Number of Sequences: 5004
Number of extensions: 29357
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 6
length of query: 253
length of database: 2,362,478
effective HSP length: 71
effective length of query: 182
effective length of database: 2,007,194
effective search space: 365309308
effective search space used: 365309308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)