GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000008-TA|BGIBMGA000008-PA|IPR012464|Protein of unknown
function DUF1676
         (253 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465...    31   0.68 
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471...    29   2.8  
04_04_0972 - 29804792-29805709                                         28   6.4  
05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322...    28   8.4  
01_06_0927 + 33082645-33083286                                         28   8.4  

>02_01_0622 -
           4658133-4658150,4658269-4658337,4658436-4658462,
           4658808-4658873,4658954-4659076,4659562-4659629,
           4659703-4659766,4659994-4660135,4660218-4660306,
           4660574-4660637,4660870-4661021,4661124-4661261,
           4661742-4661867,4661971-4662183,4662343-4662426,
           4662583-4662742,4662993-4663126,4664047-4664136,
           4664313-4664471,4665528-4665611,4666170-4666289,
           4666338-4666391,4666899-4666945,4667556-4667598,
           4667730-4668586,4668845-4668899
          Length = 1081

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 81  PSSSPEGDLNSLSSDQVDKYLQDATSKLMQTHRVVIAPQTFGEDVGRSINEARGKLKKMM 140
           PSS PEGDL  L++  +   +   +     T  V +   T    V  S+NE  G   K+ 
Sbjct: 122 PSSPPEGDLEKLTAAPLPSVVSPLSPSAPNT-AVALTVSTSHGSVPSSLNEGHGVSSKIA 180

Query: 141 GP 142
            P
Sbjct: 181 AP 182


>12_02_0699 +
           22245933-22246213,22246493-22246575,22246844-22247125,
           22248725-22248986,22250146-22251781,22251910-22252416
          Length = 1016

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 123 EDVGRSINEARGKLKKMMGPIIAGL 147
           ED  RSIN+  G L K+M P+ +GL
Sbjct: 628 EDCQRSINKTEGLLAKIMAPLRSGL 652


>04_04_0972 - 29804792-29805709
          Length = 305

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 204 HPQVSQSHTYSSSHYGGDFDSTGPGG 229
           HP +   H+Y+  H   D D  G GG
Sbjct: 21  HPDLQLQHSYAKQHEPSDDDPNGSGG 46


>05_01_0003 +
           29476-29847,30192-31519,31612-31722,31836-32112,
           32233-33714
          Length = 1189

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 81  PSSSPEGDLNSLSSDQVDKYLQDATSKLMQTHRVVIAPQTFGEDVGRSINEARGKLKKMM 140
           P+ +   +LN     QVD  L D T  L       I     G   GR I E    + K  
Sbjct: 396 PAHARTSNLNE-ELGQVDTILTDKTGTLTCNSMEFIKCSIAGTAYGRGITEVERAMAKRK 454

Query: 141 G-PIIAGLA 148
           G P+IA +A
Sbjct: 455 GSPLIADMA 463


>01_06_0927 + 33082645-33083286
          Length = 213

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 55  RAARLESLPIADGVTLVRRPEAERAFPSSSPEGDLNSLSSDQVDKYLQDATSKLMQTHRV 114
           RAA   S P +   +     +  ++F ++     LN L++DQV   L D ++ + +   V
Sbjct: 99  RAAASSSAPASSAASAAAIAQCVQSFITAMDAVKLNMLANDQVRPLLHDLSTSMGKLGPV 158

Query: 115 VIAPQTFGEDVGRSINEARGKLKKM 139
           +  P  F   V   ++E   KL KM
Sbjct: 159 L--PPDFEGKV--KVSEWLAKLNKM 179


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,970,091
Number of Sequences: 37544
Number of extensions: 216752
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 5
length of query: 253
length of database: 14,793,348
effective HSP length: 80
effective length of query: 173
effective length of database: 11,789,828
effective search space: 2039640244
effective search space used: 2039640244
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)