GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000008-TA|BGIBMGA000008-PA|IPR012464|Protein of unknown
function DUF1676
         (253 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    33   0.20 
Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z92788-1|CAB07213.1|  341|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
           protein C18C4.5b protein.
          Length = 1046

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 82  SSSPEGDLNSLSSDQV----DKYLQDATSKLMQTHRVVIAPQTFGEDVGRSINEARGKLK 137
           +S  + D N+L  D++    +KY Q A  K+      +   +T   D+GRS++EA+ +L+
Sbjct: 330 TSKKDDDSNNLLQDELRRTEEKY-QQAQKKIENLDETIKQQETQIRDLGRSLDEAKRQLQ 388

Query: 138 KM 139
           KM
Sbjct: 389 KM 390


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
           protein C18C4.5a protein.
          Length = 1022

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 82  SSSPEGDLNSLSSDQV----DKYLQDATSKLMQTHRVVIAPQTFGEDVGRSINEARGKLK 137
           +S  + D N+L  D++    +KY Q A  K+      +   +T   D+GRS++EA+ +L+
Sbjct: 330 TSKKDDDSNNLLQDELRRTEEKY-QQAQKKIENLDETIKQQETQIRDLGRSLDEAKRQLQ 388

Query: 138 KM 139
           KM
Sbjct: 389 KM 390


>Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical
            protein ZK1251.9 protein.
          Length = 1701

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 57   ARLESLPIADGVTLVRRPEAERAFPSSSPEGDLNSLSSDQVDKY 100
            AR E   ++    LVR  EAER       +G+ +S SS   D+Y
Sbjct: 1628 ARAEEQRVSFMEALVRGAEAERREEEGGDDGESSSSSSSDTDEY 1671


>Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical protein
            ZK1251.9 protein.
          Length = 1701

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 57   ARLESLPIADGVTLVRRPEAERAFPSSSPEGDLNSLSSDQVDKY 100
            AR E   ++    LVR  EAER       +G+ +S SS   D+Y
Sbjct: 1628 ARAEEQRVSFMEALVRGAEAERREEEGGDDGESSSSSSSDTDEY 1671


>Z92788-1|CAB07213.1|  341|Caenorhabditis elegans Hypothetical
           protein F53B8.1 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 74  PEAERAFPSSSPEGDLNSLSSDQVDKYLQDATSKLMQT 111
           P +  ++ SSS     NS + D  D Y+  ATS L  T
Sbjct: 122 PSSSSSYSSSSSSSSSNSHACDHCDSYVWHATSCLATT 159


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,729,952
Number of Sequences: 27539
Number of extensions: 165031
Number of successful extensions: 471
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 5
length of query: 253
length of database: 12,573,161
effective HSP length: 80
effective length of query: 173
effective length of database: 10,370,041
effective search space: 1794017093
effective search space used: 1794017093
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)