GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000008-TA|BGIBMGA000008-PA|IPR012464|Protein of unknown
function DUF1676
         (253 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34440.1 68417.m04894 protein kinase family protein contains ...    30   1.3  
At4g01870.1 68417.m00245 tolB protein-related contains weak simi...    29   2.3  
At1g77330.1 68414.m09006 1-aminocyclopropane-1-carboxylate oxida...    29   4.0  
At5g26150.1 68418.m03110 protein kinase family protein contains ...    28   7.0  
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ...    28   7.0  

>At4g34440.1 68417.m04894 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 670

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 203 KHPQVSQSHTYSSSHYGGDFDSTGPGGHYR 232
           K PQV+  H Y+++ YGG    +G GG+Y+
Sbjct: 218 KSPQVNHMHYYNNNPYGG--APSGNGGYYK 245


>At4g01870.1 68417.m00245 tolB protein-related contains weak
           similarity to TolB protein precursor (Swiss-Prot:P44677)
           [Haemophilus influenzae]
          Length = 652

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 64  IADGVTLVRRPEAERAFPSSSPEGDLNSLSSD 95
           I   +  +R      +FPSSSP GDL +L+SD
Sbjct: 328 IVSPIKTLRLLRINGSFPSSSPNGDLIALNSD 359


>At1g77330.1 68414.m09006 1-aminocyclopropane-1-carboxylate oxidase,
           putative / ACC oxidase, putative similar to
           1-aminocyclopropane-1-carboxylate oxidase GI:3386565
           from [Sorghum bicolor]
          Length = 307

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 73  RPEAERAFPSSSPEGDLNSLSSDQVDKYLQDATSKLMQT---HRVVIAPQTFGEDVGRSI 129
           + E E AF +S+P   LN L      + L++   + + T   H     P    E +G   
Sbjct: 57  KTEREEAFKTSNPVKLLNELVQKNSGEKLENVDWEDVFTLLDHNQNEWPSNIKETMGEYR 116

Query: 130 NEARGKLKKMMGPIIAGLAIKGGFVAIAF 158
            E R    KMM  +   L +  G++  AF
Sbjct: 117 EEVRKLASKMMEVMDENLGLPKGYIKKAF 145


>At5g26150.1 68418.m03110 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 703

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 57  ARLESLPIADGVTLVRRPEAERAFPSSSPEGDLNSLSSDQVDKYLQDATSKLMQTHRVVI 116
           ARL    IAD VT      A   F    PE     + + + D Y        + T R   
Sbjct: 566 ARLVPASIADSVTQFHMTSAAGTFCYIDPEYQQTGMLTTKSDVYSLGILLLQIITGR--- 622

Query: 117 APQTFGEDVGRSINEARGKLKKMMGPII 144
            P      V R+I  ++G  K+M+ P++
Sbjct: 623 PPMGLAHQVSRAI--SKGTFKEMLDPVV 648


>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 358

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 213 YSSSHYGGDFDSTGPGGHY 231
           Y    YGG ++S GPGG Y
Sbjct: 318 YGGPGYGGAYESGGPGGSY 336


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,676,429
Number of Sequences: 28952
Number of extensions: 164760
Number of successful extensions: 460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 5
length of query: 253
length of database: 12,070,560
effective HSP length: 79
effective length of query: 174
effective length of database: 9,783,352
effective search space: 1702303248
effective search space used: 1702303248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)