GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000007-TA|BGIBMGA000007-PA|undefined
         (92 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   0.30 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   4.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   4.9  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.8 bits (49), Expect = 0.30
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 34  MKAFFNNHNPTDYITKGVRKMIGRI 58
           +KA+ N H    Y TKG + M+  I
Sbjct: 99  LKAWLNEHKKNPYPTKGEKIMLAII 123


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 26  KMVLKHRRMKAFFNNHNPTDYITKGVRKM---IGRIYSVSDRVRDKIAESTMALDN 78
           K+  ++RRMK   +N  P    TK VR+     G   +   +VR K   +T A +N
Sbjct: 278 KIWFQNRRMKWKKDNKLPN---TKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNN 330


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 26  KMVLKHRRMKAFFNNHNPTDYITKGVRKM---IGRIYSVSDRVRDKIAESTMALDN 78
           K+  ++RRMK   +N  P    TK VR+     G   +   +VR K   +T A +N
Sbjct: 278 KIWFQNRRMKWKKDNKLPN---TKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNN 330


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.329    0.139    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,420
Number of Sequences: 317
Number of extensions: 553
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 92
length of database: 114,650
effective HSP length: 47
effective length of query: 45
effective length of database: 99,751
effective search space:  4488795
effective search space used:  4488795
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.4 bits)
S2: 37 (19.0 bits)