GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000007-TA|BGIBMGA000007-PA|undefined
         (92 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    28   0.19 
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   0.44 
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   1.4  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   2.4  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   3.1  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    24   4.1  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    23   5.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    23   5.5  
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom...    23   5.5  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    23   9.5  

>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 144

 Score = 28.3 bits (60), Expect = 0.19
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 19 RPRPMRRKMVLKHRRMKAFFNNHNPTDYITKG 50
          + + +++ ++LK +  K F+ N  P +YI KG
Sbjct: 31 KAKRIKQDLILKAKTKKHFYKNVRPEEYIKKG 62


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 0.44
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 20  PRPMRRKMVLKHRRMKAFFNNHNP-TDYITKGVRKMIGRIYSVSDRVRDKIAESTMALDN 78
           P P   K   K R + +     N  T   +K V+K+  R  S S +  DK  +ST+   +
Sbjct: 570 PSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKSDKNTQSTLLFYD 629

Query: 79  PFS 81
           P S
Sbjct: 630 PSS 632


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 41  HNPTDYITKGVRKMIGRIYSVS 62
           H+PTD++ +  R   G ++SVS
Sbjct: 287 HSPTDWVVERRRHFSGELFSVS 308


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 9/30 (30%), Positives = 20/30 (66%)

Query: 34  MKAFFNNHNPTDYITKGVRKMIGRIYSVSD 63
           ++AF + H P D++   + +++ R YS+S+
Sbjct: 325 LEAFPSCHPPVDHLISALPQLMPRWYSISN 354


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 53  KMIGRIYSVSDRVRDKIAESTMALDNPFSI 82
           +++GR+Y V  + R ++ +  M    PF I
Sbjct: 876 EVLGRVYGVVSKRRGRVIDEEMKEGTPFFI 905


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 41  HNPTDYITKGVRKMIGRIYSVS 62
           H+P D++ +  R   G ++SVS
Sbjct: 373 HSPADWVIESRRHFSGELFSVS 394


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 40  NHNPTDYITKGVRKMIGRIYSVS 62
           N NP DY T    + I R Y +S
Sbjct: 460 NINPPDYTTHPFSESIKRFYQIS 482


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 43   PTDYITKGVRKMIGRIYSVSDRVRDKIA 70
            P DY++ G   ++  ++ V+D+  D+ +
Sbjct: 1747 PLDYLSAGCPTLVANLWDVTDKDIDRFS 1774


>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 205

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 54 MIGRIYSVSDRVRDKIAESTMALDNP 79
          MIGR YSV+D  R   +++     NP
Sbjct: 26 MIGRKYSVADASRGYSSKNANKASNP 51


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 33  RMKAFFNNHNPTDYITKGVRKMIGRIYSVSDRVR 66
           R K  FN  + + YI +GVR++   I  +S++ R
Sbjct: 350 RSKGIFNKDDGSWYIFQGVREVF-EIMPLSEKPR 382


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.329    0.139    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 344,251
Number of Sequences: 5004
Number of extensions: 10421
Number of successful extensions: 38
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 10
length of query: 92
length of database: 2,362,478
effective HSP length: 62
effective length of query: 30
effective length of database: 2,052,230
effective search space: 61566900
effective search space used: 61566900
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 46 (22.6 bits)