GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000007-TA|BGIBMGA000007-PA|undefined
         (92 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358...    29   0.48 
01_01_0510 - 3723983-3724416,3724895-3725766,3725797-3726791,372...    27   1.5  
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302...    26   4.4  

>12_01_0456 +
           3587244-3587440,3587595-3587766,3587877-3587999,
           3588165-3588338,3588537-3588647,3588737-3588870,
           3588945-3589038,3589122-3589220,3590494-3590630,
           3590709-3590803,3590922-3591045,3591122-3591209,
           3592867-3593043,3593130-3593167,3593398-3593485,
           3594101-3594209,3594374-3594443,3594520-3594667,
           3595069-3595197,3595292-3595417,3595596-3595658,
           3595952-3596197
          Length = 913

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 21  RPMRRKMVLKHRRMKAFFNNHNPTDYITKGVRKMIGRIYSVSDRVR 66
           R +  K+ +     K  F++H P+DY T    K++G + S  D  R
Sbjct: 668 RHLNFKLAMSVLASKIDFSDHEPSDYYTNITSKILGDMLSPHDMKR 713


>01_01_0510 -
          3723983-3724416,3724895-3725766,3725797-3726791,
          3727332-3727439
          Length = 802

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 48 TKGVRKMIGRIYSVSDRVRDKIAESTMALDNPFSIRFYE 86
          T GV K   ++YS  D  + ++  + M  + P + R+YE
Sbjct: 44 TVGVGKGATKVYSTIDLEKARVGRTRMITNEPINPRWYE 82


>12_01_0386 +
           3023431-3023522,3023951-3024097,3024227-3024308,
           3024801-3024842,3024930-3024989,3025430-3027109,
           3027239-3027340,3027461-3027604,3027704-3027829,
           3027933-3028100
          Length = 880

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 36  AFFNNHNPTDYITKGVRKMIGRIYS--VSDRVRDKIAESTMAL 76
           AF N+H   D++  G R +   +Y+   S +V D+   ST  +
Sbjct: 329 AFLNSHGSFDFLQAGPRVVEANLYNNGTSSQVLDQRCSSTSGM 371


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.329    0.139    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,114
Number of Sequences: 37544
Number of extensions: 62184
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 3
length of query: 92
length of database: 14,793,348
effective HSP length: 70
effective length of query: 22
effective length of database: 12,165,268
effective search space: 267635896
effective search space used: 267635896
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 52 (25.0 bits)