GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000007-TA|BGIBMGA000007-PA|undefined
         (92 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24266| Best HMM Match : Transposase_35 (HMM E-Value=1.2)            28   1.2  
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19)                  25   6.4  
SB_23904| Best HMM Match : RdRP (HMM E-Value=0)                        25   6.4  
SB_7706| Best HMM Match : Spectrin (HMM E-Value=0)                     25   6.4  
SB_49945| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  
SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         25   8.5  
SB_2515| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.5  

>SB_24266| Best HMM Match : Transposase_35 (HMM E-Value=1.2)
          Length = 151

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 25 RKMVLKHRRMKAFFNNHNPTDYITKGVRKMIGRIYSVSDRVRD-KIAESTMALDNPFSIR 83
          RK+  K R ++ F  +HN  DY+T  V+ +  RI     R+ + K+A  T   + P+  +
Sbjct: 2  RKIAYKLRTLRKFKLSHNLEDYLT-DVKNIDHRIALTKFRLSNHKLAIETGRYEKPYK-K 59

Query: 84 FYEDRCTV 91
            E +C V
Sbjct: 60 PNERKCLV 67


>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 53  KMIGRIYSVSDRVRDKIAESTMALDNPFSIRFYED 87
           +M   +  V+D+V+ ++  +T  L  P S  FY+D
Sbjct: 869 EMYDDVDQVADQVKAELERNTFFLSEPISEDFYDD 903


>SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19)
          Length = 1463

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 21   RPMRRKMVLKHRRMKAFFNNHNPTDYITKGVRKMIGRIYSVSDRVRDKIAESTMALDN 78
            RP  RK    HRR++    +     Y+   V  ++  +  +SD V   + E T  LDN
Sbjct: 1406 RPSMRKFQSSHRRLEVLQTSRPQAVYLNHQVIMLLSNL-GISDDVFMSLLEKT--LDN 1460


>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 1511

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 21  RPMRRKMVLKHRRMKAFFNNHNPTDYITKGVRKMIGRIYSVSDRVRDKIAESTMALDN 78
           RP  RK    HRR++    +     Y+   V  ++  +  +SD V   + E T  LDN
Sbjct: 89  RPSMRKFQSSHRRLEVLQTSRPQAVYLNHQVIMLLSNL-GISDDVFMSLLEKT--LDN 143


>SB_7706| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 686

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 30  KHRRMKAFFNNHNP-TDYITKGVRKMIGRIYSVSDRVRDKI 69
           KH+R++A  NNH P    +T+   K +   +  +D ++ ++
Sbjct: 314 KHQRLEAEINNHEPRIAAVTECGNKFVEEGHGNADEIKARV 354


>SB_49945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 18  RRPRPMRR----KMVLKHRRMKAFFNNHNPTDYITKGVRKMIGRIYSVSDRVRDKIAEST 73
           R PR +RR    ++ L +      F  H+  D   K     I RIYSVS  ++ K  +  
Sbjct: 264 RTPRSLRRWDGTEVALPNFMKGNEFLTHDKLDIGQKQYIWGIARIYSVSHLMQLKQRQYQ 323

Query: 74  MALDNPFSIRFYEDRCT 90
             LD  F+ R   +  T
Sbjct: 324 SLLDYEFNRRLQNNELT 340


>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 39  NNHNPTDYITKGVRKMIGRIYSVSDRVRDKIAESTMALDNPFSIRFYEDR 88
           +N+  T++  + V K++  +  V D     + E T A ++  S+ FY+DR
Sbjct: 65  SNYLATEHDKRSVTKLLKSVKVVDDFAC--VRECTRAEESCTSVNFYKDR 112


>SB_2515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 26  KMVLKHRRMKAFFNNHNPTDYI 47
           ++VLKHR  K +F  HN   +I
Sbjct: 216 QLVLKHRLPKPWFKPHNDWSFI 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.329    0.139    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,428
Number of Sequences: 59808
Number of extensions: 83023
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 8
length of query: 92
length of database: 16,821,457
effective HSP length: 69
effective length of query: 23
effective length of database: 12,694,705
effective search space: 291978215
effective search space used: 291978215
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 52 (25.0 bits)