GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000007-TA|BGIBMGA000007-PA|undefined
         (92 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76825.1 68414.m08940 eukaryotic translation initiation facto...    25   6.7  
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    25   6.7  
At1g76720.1 68414.m08929 eukaryotic translation initiation facto...    25   6.7  
At3g49880.1 68416.m05453 glycosyl hydrolase family protein 43 co...    25   8.9  
At2g45260.1 68415.m05634 expressed protein contains Pfam profile...    25   8.9  

>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to
           SP|O60841 Translation initiation factor IF-2 {Homo
           sapiens}; contains Pfam profile PF00009: Elongation
           factor Tu GTP binding domain
          Length = 630

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 33  RMKAFFNNHNPTDYITKG 50
           R+ +  NNH P DY  KG
Sbjct: 547 RIASIENNHKPVDYAEKG 564


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
            family protein / eIF-2 family protein similar to IF2
            protein [Drosophila melanogaster] GI:7108770; contains
            Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 33   RMKAFFNNHNPTDYITKG 50
            R+ +  NNH P DY  KG
Sbjct: 1211 RIASIENNHKPVDYAKKG 1228


>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
            family protein / eIF-2 family protein similar to
            SP|O60841 Translation initiation factor IF-2 {Homo
            sapiens}; contains Pfam profiles PF00009: Elongation
            factor Tu GTP binding domain, PF03144: Elongation factor
            Tu domain 2
          Length = 1201

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 33   RMKAFFNNHNPTDYITKG 50
            R+ +  NNH P DY  KG
Sbjct: 1135 RIASIENNHKPVDYAEKG 1152


>At3g49880.1 68416.m05453 glycosyl hydrolase family protein 43
           contains similarity to xylanase GI:2645416 from
           [Caldicellulosiruptor saccharolyticus]
          Length = 466

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 23  MRRKMVLKHRRMKAFFNNHNPTDYITKG 50
           M+R MV +HR   A F + N    IT G
Sbjct: 319 MKRIMVGQHREAPAIFKHQNTYYMITSG 346


>At2g45260.1 68415.m05634 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 425

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 27  MVLKHRRMKA-FFNNHNPTDYITKG 50
           ++L H +M+A FF N +  DY+T G
Sbjct: 307 LLLVHPKMEASFFGNLDQRDYVTGG 331


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.329    0.139    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,510
Number of Sequences: 28952
Number of extensions: 52946
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 5
length of query: 92
length of database: 12,070,560
effective HSP length: 69
effective length of query: 23
effective length of database: 10,072,872
effective search space: 231676056
effective search space used: 231676056
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)