Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000006-TA|BGIBMGA000006-PA|IPR012464|Protein of unknown
function DUF1676
         (270 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.2  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   5.6  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   5.6  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 126 DLPSELDMPLDGEDEAEV 143
           D+   ++ P+DGED+ +V
Sbjct: 336 DVKRIINQPMDGEDQCDV 353


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
          optomotor-blind-like protein protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 46 QWMSSVANDDEIKITEDLS 64
          QWM  V +  ++K+T ++S
Sbjct: 66 QWMQKVVSFHKLKLTNNIS 84


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
          optomotor-blind-like protein protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 46 QWMSSVANDDEIKITEDLS 64
          QWM  V +  ++K+T ++S
Sbjct: 66 QWMQKVVSFHKLKLTNNIS 84


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,545
Number of Sequences: 317
Number of extensions: 1576
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 270
length of database: 114,650
effective HSP length: 56
effective length of query: 214
effective length of database: 96,898
effective search space: 20736172
effective search space used: 20736172
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)