GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000006-TA|BGIBMGA000006-PA|IPR012464|Protein of unknown
function DUF1676
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    30   0.31 
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    29   0.71 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    29   0.93 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   2.9  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   3.8  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    25   8.7  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 54  DDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYE-MFDKVDKFLQSHTLRVKVPEEITK 112
           ++ I I++D+S+ +T  V+D+  A+  + +D   E   D ++K        VK  E +T 
Sbjct: 884 EENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDDIEKDELEDIKEVKEDENLTT 943

Query: 113 SAASEYVP 120
              +  +P
Sbjct: 944 LEETIEIP 951


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 12/83 (14%)

Query: 58  KITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPEEITKSAASE 117
           K+ E +   K   VE +      L++ P   M +KV K       + KV E     A +E
Sbjct: 94  KVEEKVEEFKEDNVEQEIKQKRSLSESPQESMLEKVSK-------KPKVSE-----AHNE 141

Query: 118 YVPRSLLTDLPSELDMPLDGEDE 140
            +    +  + +ELD+P+ G+DE
Sbjct: 142 EISPENVETIENELDLPVKGKDE 164


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 84   DPAYEMFDKVDKFLQSHTL----RVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGED 139
            D +Y  FD +    ++H +     V V   IT +   EY+ +   T L  ++ +  DG+D
Sbjct: 1018 DCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGKD 1077

Query: 140  EAEVVE 145
              E+ E
Sbjct: 1078 REEIGE 1083


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 44   TLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLR 103
            TL   SS AND+  ++T  +++  T T + D+SA   +       + D  D  L+ +  R
Sbjct: 1232 TLDGNSSSANDNTQELTNVVNVALTSTGDLDDSA---IVSKLNQILSDFRDDLLEHNVRR 1288

Query: 104  VK-VPEEITKSAASEY 118
            V  V   I KSA   Y
Sbjct: 1289 VTIVGGRINKSAYPSY 1304


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 14  ASATYPASKLVK--NIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDL--SIVKTG 69
           AS     S  VK  N+ N  LSQ S+E +  ++++  S+  ND    +T  L  S+  + 
Sbjct: 302 ASRVRSFSNYVKSSNVVNPSLSQASLEIIPRKSMKRDSNAQNDGTSTMTSKLKPSVGLSN 361

Query: 70  TVEDDESADPRLAKDPAY 87
           T +  +    R A  P +
Sbjct: 362 TRDAPKPGGLRRANKPCF 379


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 1/107 (0%)

Query: 18  YPASKLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESA 77
           +P  + V++      +     CV P  +    +V ++   K+TE +  +K G   D  SA
Sbjct: 277 FPIDQAVESFCTIKFNSCGQVCVCPNRVYVHKNVYDEFVSKLTEKVKTIKVGDGFDSSSA 336

Query: 78  -DPRLAKDPAYEMFDKVDKFLQSHTLRVKVPEEITKSAASEYVPRSL 123
             P +++D   ++   ++  +          +EI+ S    + P  L
Sbjct: 337 VGPLISQDGCKKVSKHIEDAVSKGAKITVGGKEISSSKGYFFEPTVL 383


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,005,607
Number of Sequences: 5004
Number of extensions: 34027
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 6
length of query: 270
length of database: 2,362,478
effective HSP length: 72
effective length of query: 198
effective length of database: 2,002,190
effective search space: 396433620
effective search space used: 396433620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)