Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000006-TA|BGIBMGA000006-PA|IPR012464|Protein of unknown
function DUF1676
(270 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089) 37 0.015
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 31 0.76
SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6) 31 0.76
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 30 2.3
SB_21445| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016) 29 5.3
SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14) 28 7.0
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
Length = 822
Score = 37.1 bits (82), Expect = 0.015
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 21 SKLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPR 80
SKLVK Y L + +KP Q +SS+ DDEI TE+ I++T T + PR
Sbjct: 15 SKLVKQRYRTELRSRILASIKPEISQALSSLL-DDEIHGTEEEKIMRTATRSFTKGLKPR 73
Query: 81 LAKDP 85
+ P
Sbjct: 74 SSTHP 78
>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1429
Score = 32.3 bits (70), Expect = 0.43
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 22 KLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRL 81
KLVK Y L ++ +KP Q +S + DEI TE+ I++T T + PR
Sbjct: 460 KLVKRRYGTELRSRTLALIKPEISQALSLLL--DEIHGTEEAKIMRTATQSFTKGPKPRS 517
Query: 82 AKDP 85
+ P
Sbjct: 518 STHP 521
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 24 VKNIYNECLSQYSVECVKPRTLQWMSSV-ANDDEI-KITEDLSIVKTGTVEDDESADPRL 81
+K+ N+ L + + KP++ QW + +EI K TED + G ++ E D +
Sbjct: 497 LKDSLNKTLGAHVAQHQKPKSQQWRERLNLKKEEIPKKTEDTKSEEVGGNDEPEEEDAHV 556
Query: 82 AKDPAYEMF 90
K P F
Sbjct: 557 VKHPTMPFF 565
>SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)
Length = 348
Score = 31.5 bits (68), Expect = 0.76
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 62 DLSIVKTGTVEDDESADPRLAKDPAYEMFDK--VDKFLQSHTLRVKVPEEITKSAASEYV 119
D+SIV G V D +DPR+ KDP ++F VD FL + VP+ + S +
Sbjct: 34 DVSIVLNGAVAD---SDPRVLKDPKRKVFKTGGVDAFL------LTVPQSLDPSEEMKEA 84
Query: 120 PRSLLTDLP 128
P++ +P
Sbjct: 85 PKTKKEGIP 93
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 41 KPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSH 100
K +T+ S+V D E + + V T P + P D+VD +H
Sbjct: 227 KSKTILDESTVKPDSEDIVVPGIIDVDADTPRPTAVTKPTMMATPTMSRIDQVDFIPAAH 286
Query: 101 TLRVKVPEEI-TKSAASEY--VPRSLLTDLPSEL-DMP 134
K EE+ T +EY P S + D+ ++ D+P
Sbjct: 287 EKEDKNDEEVPTVKITAEYAPTPASRIPDIQKDINDIP 324
>SB_21445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 72 EDDESADPRLAKDPAYEMFDKVDKFLQSHTL 102
ED +SA R+A DPAY+ +D + L++ L
Sbjct: 45 EDKDSAPSRIAIDPAYDYYDIHQEILRARCL 75
>SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 47 WMSSVANDDEIKITEDLSIVKTGTVEDD 74
W++ V N+D +K+TE+ S+V T + D
Sbjct: 3 WINVVDNEDLVKLTEESSVVILATYDGD 30
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 100 HTLRVKVPEEITKSAASEYVPRSLLTDL-PSELD 132
H + V + +++AA +YVPR++L DL P+ +D
Sbjct: 954 HCKEIGVGSKTSEAAAGKYVPRAVLVDLEPTVID 987
>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
Length = 999
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 94 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGEDE 140
+K SH + K + A E + L P+ELD+P D EDE
Sbjct: 155 NKASASHYTQKKTTGSSSTEALREDISYMLEAVTPAELDVPTDNEDE 201
>SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 49 SSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPE 108
S N+D++ T D K T DD+ D E F++++K P
Sbjct: 323 SQTVNEDKVPTTNDDDEDKASTTNDDDQDKASTTND--NEEFEEIEK---------NPPV 371
Query: 109 EITKSAASEYVPRSLLTDLPSELDMPLDGEDEAEVVE 145
E + SE + LL + E P ED+ + E
Sbjct: 372 EPAEYTISEEKRKDLLRQIIEEESTPSSDEDDGDYEE 408
>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
Length = 1089
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 VANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAY-EMFDKVDKFL 97
+ +DD+I +D++ T EDD +++ + +PA E+ D+ ++ L
Sbjct: 114 ITSDDDITSDDDITSDDDITSEDDITSEDNITTEPAIKEVIDRANELL 161
>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/97 (20%), Positives = 34/97 (35%)
Query: 49 SSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPE 108
S N+D++ T D K T DD+ D + + + + P
Sbjct: 79 SQTVNEDKVPTTNDDDEDKASTTNDDDKDKASTTNDDDQDKASTTNDNEEFGEIEKNPPV 138
Query: 109 EITKSAASEYVPRSLLTDLPSELDMPLDGEDEAEVVE 145
E + SE + LL + E P +D+ + E
Sbjct: 139 EPAEYPISEDKRKDLLRQIIEEERTPSSDDDDGDYEE 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,101,050
Number of Sequences: 59808
Number of extensions: 234505
Number of successful extensions: 613
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 14
length of query: 270
length of database: 16,821,457
effective HSP length: 81
effective length of query: 189
effective length of database: 11,977,009
effective search space: 2263654701
effective search space used: 2263654701
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -