GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000006-TA|BGIBMGA000006-PA|IPR012464|Protein of unknown
function DUF1676
         (270 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical pr...    31   0.87 
U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z75550-7|CAA99930.1|  591|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical
           protein F40F9.6b protein.
          Length = 910

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 97  LQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPL--DGEDEAEVVEG 146
           L   T+RV++ +E   +    YVP   L  LP EL+     +G+ EA+++ G
Sbjct: 81  LADSTVRVQI-DEPESAIRKRYVPNPALVSLPEELEFSSVENGDQEAKIIGG 131


>Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical
           protein F40F9.6a protein.
          Length = 924

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 97  LQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPL--DGEDEAEVVEG 146
           L   T+RV++ +E   +    YVP   L  LP EL+     +G+ EA+++ G
Sbjct: 95  LADSTVRVQI-DEPESAIRKRYVPNPALVSLPEELEFSSVENGDQEAKIIGG 145


>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 14  ASATYPASKLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVED 73
           AS  YP +   +NI+N    Q  +    P  + W ++    D     + L+ +K GT++ 
Sbjct: 318 ASFKYPIN-YYRNIFNAKKQQADLVLEMPTLIIWGTADGALDIEAAVDSLNTLKQGTMKK 376

Query: 74  DESADPRLAKDPAYEMFDKVDKFLQSH 100
            E A   + +D    + + + KFL  +
Sbjct: 377 IEGASHWVQQDEPEMVNEHIKKFLNKY 403


>Z75550-7|CAA99930.1|  591|Caenorhabditis elegans Hypothetical
          protein T22C1.8 protein.
          Length = 591

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 69 GTVEDDESADPRLAKDPAYEMFDKVDK 95
          G  +DD+ A  RLAK P+ E  D+ DK
Sbjct: 9  GNSQDDQQASRRLAKKPSDEKVDEKDK 35


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,306,939
Number of Sequences: 27539
Number of extensions: 179359
Number of successful extensions: 537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 4
length of query: 270
length of database: 12,573,161
effective HSP length: 80
effective length of query: 190
effective length of database: 10,370,041
effective search space: 1970307790
effective search space used: 1970307790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)