Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000005-TA|BGIBMGA000005-PA|IPR001128|Cytochrome P450
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    28   1.9  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    28   1.9  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    27   4.4  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   5.8  
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    26   5.8  

>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 62  HSDIVFNRTKLKIEQDYAVAVLHGVNAMVRILQHYPRHASCIGRPISANPVAKQF 116
           H + V +   + I  D+      G++  + IL+ YP  A  I +PI++ PV   F
Sbjct: 95  HPEDVPSAYLIGIPPDFHGCTTPGMDMELEILRKYPNAALFIEKPITSAPVQGAF 149


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 5/30 (16%)

Query: 188 TLMCVGSHPPEILQYHQGPVSLCLHHHPVW 217
           TL C+ S PP  L      ++LC HHH  W
Sbjct: 275 TLNCLKSSPPNALV-----IALCCHHHCRW 299


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 39  NSYLETNNILHNIFTKRFQ-KFWLHSDIVFNRTKLKIEQDYAVAVLHGVNAMVRILQHYP 97
           +S L     +     +R+Q   W+   I+   T L    D  V VLH      RIL + P
Sbjct: 78  DSILNKQKSVFENLDERYQISRWIDRRIIPRNTNLDATMDQTVVVLHEKLENDRILMYLP 137

Query: 98  RHASCIGRPISANP 111
                + +P +  P
Sbjct: 138 HLDKSLEQPYNHLP 151


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 105 RPISANPVAKQFERWVSRLRHNRDPSWFLYGFSKHRMCREQKPFIDLLIEIAEEKGLSDM 164
           R  S NP + Q E   SRL   R   +F      + +C   K F+  L+E  E+ G + +
Sbjct: 263 RSSSNNPDSDQ-ESQFSRLPDERATMFFTI----YELCCCNKLFLKKLVEGGEKNGEAPL 317

Query: 165 EVIHELATFI 174
           E +  L ++I
Sbjct: 318 EALLSLLSYI 327


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 250 CIGKTFAMMSMKTTLAHLLRQYRVTADITRMEAKLDIILKPAF 292
           CIG+T A      T+  ++RQ    AD  +  +K+ I  +P +
Sbjct: 126 CIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVW 168


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,230
Number of Sequences: 5004
Number of extensions: 65163
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 6
length of query: 303
length of database: 2,362,478
effective HSP length: 72
effective length of query: 231
effective length of database: 2,002,190
effective search space: 462505890
effective search space used: 462505890
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)