GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000003-TA|BGIBMGA000003-PA|undefined
         (69 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    26   0.53 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   2.8  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    23   5.0  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    23   5.0  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    23   5.0  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    23   6.6  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    22   8.7  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    22   8.7  

>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 0.53
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 5   ALKVALVEEDGAPLFVYFLSWLQYMLLFVKISGIPQAEYESST 47
           A++     E G  +    L  L +++LF+KISG+   EY S +
Sbjct: 420 AIRTGNAPESGDLVTPPLLRILTHIILFLKISGLAVDEYTSDS 462


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 24  SWLQYMLLFVKISGIPQAEYESSTDVLPEDLDTFDLLQRARLDALV 69
           S L Y  LF+K        Y   +D++ +  D  DLL R  +  L+
Sbjct: 232 SLLVYRQLFLKAGMFMHERYREVSDIILQFRDHKDLLIRKTVTELI 277


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 6   LKVALVEEDGAPLFVYFLSWLQYMLLFVKISGIPQAEYES 45
           L +++V       F++F++ +  +LL   I  I Q+ YES
Sbjct: 547 LLLSVVRGKSGIAFLFFMAIMLKLLLGKAILAITQSRYES 586


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 21  YFLSWLQYMLLFVKISGIPQAEYESSTDVLPEDLDTFD 58
           YF  WLQ M L  + S + +AE     +     + TFD
Sbjct: 759 YFRKWLQRMQLNQEESSLLEAEATIEGNRTSRYMHTFD 796


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 10  LVEEDGAPL-FVYFLSWLQYMLLFVKISGIPQAEYESSTDVLPEDLDTFDLLQRARLD 66
           L+  +G+   F+  ++W   +   ++   +   + ES + V    LD+F L+++   D
Sbjct: 351 LISSEGSQSKFLLIIAWKSNLNTVIQKCNLSLDQDESFSCVWSHSLDSFSLIEKTFFD 408


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 37  GIPQAEYESSTDVL----PEDLDTFDLLQRARLDALV 69
           G P    ES+ D L    P  LD  DLL   RLD+ V
Sbjct: 510 GFPVTALESADDSLFDAPPVMLDEADLLGSERLDSSV 546


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 34  KISGIPQAEYESSTDVLPEDLDT 56
           K++GI Q  +E STDV  +  D+
Sbjct: 398 KLAGIMQNIFEQSTDVASKYCDS 420


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 35  ISGIPQAEYESSTDVLPEDLD 55
           ISG+P  E   S+  LP+D D
Sbjct: 524 ISGVPLNELSLSSLPLPKDFD 544


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.140    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,594
Number of Sequences: 5004
Number of extensions: 10173
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 8
length of query: 69
length of database: 2,362,478
effective HSP length: 49
effective length of query: 20
effective length of database: 2,117,282
effective search space: 42345640
effective search space used: 42345640
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)