GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000003-TA|BGIBMGA000003-PA|undefined
         (69 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1149 - 26467252-26468319,26468452-26469147,26469263-264694...    25   7.5  
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446...    25   7.5  
02_03_0113 - 15381289-15381556,15381633-15381985,15382184-153822...    25   7.5  
10_08_0979 - 22000645-22000923,22000991-22001896                       25   9.9  
01_01_0061 + 483116-483757,483891-484046,484171-484262,484410-48...    25   9.9  

>12_02_1149 -
           26467252-26468319,26468452-26469147,26469263-26469409,
           26470936-26471274
          Length = 749

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)

Query: 41  AEYESSTDVLPEDLD 55
           AEY S TD L EDLD
Sbjct: 248 AEYPSDTDSLDEDLD 262


>03_01_0607 +
           4464669-4465367,4466212-4467369,4468005-4469114,
           4469273-4469314,4469496-4469572,4469671-4469755,
           4469818-4469901,4469988-4470089,4470181-4470279,
           4470794-4470919
          Length = 1193

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 24  SWLQYMLLFVKISGIPQAEYESSTDVLPEDLDTFDL 59
           S L   L+ +  S    A+Y S   +LP D DT D+
Sbjct: 250 SMLVAALMDIITSNCDNADYSSFQPLLPSDADTRDI 285


>02_03_0113 -
          15381289-15381556,15381633-15381985,15382184-15382231,
          15382260-15382439,15382835-15382954
          Length = 322

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 45 SSTDVLPEDLDTFDLLQRARLDAL 68
          S TD LPE L   D+L+R  +D L
Sbjct: 61 SRTDSLPEKLHLIDVLERLCVDHL 84


>10_08_0979 - 22000645-22000923,22000991-22001896
          Length = 394

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 41  AEYESSTDVLPEDLDTFDLLQRARLDAL 68
           A+YE   DV   D D  DL+ R   D L
Sbjct: 282 AKYEMKYDVYRVDFDAGDLIPRLAADTL 309


>01_01_0061 +
          483116-483757,483891-484046,484171-484262,484410-485076
          Length = 518

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 47 TDVLPEDLDTFDLLQR 62
          TD++P DLD  DLL R
Sbjct: 35 TDIVPADLDDKDLLPR 50


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.140    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,110
Number of Sequences: 37544
Number of extensions: 56680
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 5
length of query: 69
length of database: 14,793,348
effective HSP length: 49
effective length of query: 20
effective length of database: 12,953,692
effective search space: 259073840
effective search space used: 259073840
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)