GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000003-TA|BGIBMGA000003-PA|undefined
         (69 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)                36   0.005
SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   0.52 
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.2  
SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_42385| Best HMM Match : 7tm_1 (HMM E-Value=0.055)                   25   6.4  
SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015)                25   6.4  
SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084)           25   6.4  

>SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)
          Length = 1166

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 7   KVALVEEDGAPLFVYFLSWLQYMLLFVKISGIPQAEYESSTDVLPEDLDTFDLLQRA 63
           +VA+V ED A  + + LS+LQ   +F K    P+ + E    V  E+LDTF LL RA
Sbjct: 841 RVAMVGEDSAGPWTFLLSYLQSFFIFDKFD--PRTDGEL---VDAEELDTFGLLARA 892


>SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 39  PQAEYESSTDVLPEDLDTFDLLQRARLDALV 69
           PQ  Y    D LPED D  + LQR +L+ ++
Sbjct: 107 PQVHYYLLCDALPEDRDLRERLQRVQLEDIL 137


>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1226

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 27  QYMLLFVKISGIPQAEYESSTDVLPEDLDTFDLLQRARLDAL 68
           +YM+ +     +P  E+E   +VL + +  F+ +  ARL  L
Sbjct: 893 KYMIAYTTDPSLPDKEWEEQEEVLSKFISRFERVVTARLTGL 934


>SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 850

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 4   VALKVALVEEDGAPLFVYFLSWLQYMLLFVK 34
           V++ V L+E D A L +  +S+L+ + +FV+
Sbjct: 205 VSMLVQLLERDNADLLILVVSFLKKLSIFVE 235


>SB_42385| Best HMM Match : 7tm_1 (HMM E-Value=0.055)
          Length = 209

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 6  LKVALVEEDGAPLFVYFLSWLQYMLLFVKISGIPQAEYESSTDVLPEDLDTFDLL 60
          LK  + + +    F Y +S  Q MLL ++ S     + E +T+ L +D  TF LL
Sbjct: 13 LKELVAKAECLSHFTYMMSNEQLMLLDIQGSQFQLYDPEIATNNLKDDSITFRLL 67


>SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015)
          Length = 292

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 18  LFVYFLSWLQYMLLFVKISGIP 39
           LFVYF+   +Y L+ V  +G+P
Sbjct: 104 LFVYFIHEWRYQLVAVSATGLP 125


>SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084)
          Length = 682

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 5/47 (10%)

Query: 2   EKVALKVALVEEDGAPLFVYFLSWLQYMLLFVKISGIPQAEYESSTD 48
           E+V +++  V+EDG PL  YF +  + M    ++  +  A++ES T+
Sbjct: 391 EEVKIEMP-VDEDGGPLHAYFKNHTRGM----RVPFVVYADFESVTE 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.140    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,415
Number of Sequences: 59808
Number of extensions: 59274
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 7
length of query: 69
length of database: 16,821,457
effective HSP length: 48
effective length of query: 21
effective length of database: 13,950,673
effective search space: 292964133
effective search space used: 292964133
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)