GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000003-TA|BGIBMGA000003-PA|undefined
         (69 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41024-1|AAA82345.2|  679|Caenorhabditis elegans Hypothetical pr...    30   0.23 
AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical ...    27   2.1  
Z69384-8|CAM06585.1|  495|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z69384-7|CAA93417.2|  502|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z81015-5|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    25   6.5  
AF077537-9|AAC26278.1|  204|Caenorhabditis elegans Hypothetical ...    25   8.6  

>U41024-1|AAA82345.2|  679|Caenorhabditis elegans Hypothetical
           protein T14G11.3 protein.
          Length = 679

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 3   KVALKVALVEEDGAPLFVYFLSWLQYMLLFVKISGIPQAEYESSTDVLPEDLDTFDLLQR 62
           K+  K A ++E+G  L  YF S+++ + L      +PQ +Y +   +   + D +++L R
Sbjct: 564 KIGRKTASIDENGGTLGAYFWSYVKSLFLV----DMPQ-QYGNLDAIDVNNTDNYEILSR 618

Query: 63  AR 64
           A+
Sbjct: 619 AK 620


>AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical
           protein Y116A8C.11 protein.
          Length = 281

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/45 (28%), Positives = 27/45 (60%)

Query: 11  VEEDGAPLFVYFLSWLQYMLLFVKISGIPQAEYESSTDVLPEDLD 55
           VE+D +    YFL   QY+L+ ++     + E+E  T+++ +D++
Sbjct: 118 VEKDYSNDKRYFLEREQYLLITMESMESGKLEHEQQTEIMNKDVE 162


>Z69384-8|CAM06585.1|  495|Caenorhabditis elegans Hypothetical
           protein T11G6.2b protein.
          Length = 495

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 26  LQYMLLFVKISGIPQAEYESSTDVLPEDLD 55
           L ++  F+    +P A +E S+D+LPE ++
Sbjct: 213 LLFIYSFLVFFQLPSAPWEVSSDILPEQME 242


>Z69384-7|CAA93417.2|  502|Caenorhabditis elegans Hypothetical
           protein T11G6.2a protein.
          Length = 502

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 26  LQYMLLFVKISGIPQAEYESSTDVLPEDLD 55
           L ++  F+    +P A +E S+D+LPE ++
Sbjct: 220 LLFIYSFLVFFQLPSAPWEVSSDILPEQME 249


>Z81015-5|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 3   KVALKVALVEED--GAPLFVYFLSWLQYMLLFVKISGIPQAEYESSTDVLPEDLDTFDLL 60
           K+  ++  +++D   A  F Y   WL ++ L   IS    A Y+    +   D DT  L+
Sbjct: 890 KIMSEIEKLKDDVASAGRFFYVSEWLNFIGLQDYISNFVGAGYKHMAKLTEIDWDTARLM 949

Query: 61  Q 61
           Q
Sbjct: 950 Q 950


>AF077537-9|AAC26278.1|  204|Caenorhabditis elegans Hypothetical
           protein F16G10.10 protein.
          Length = 204

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 3   KVALKVALVEEDGAPLFVYFLSWLQYMLLFVKISGIPQAEYESSTDVLPEDLDTFDL 59
           ++++ + + + DG  +FV   + L Y+L   + S +P+A+      ++P  L   DL
Sbjct: 89  EISVPMTIEKVDGCDVFVCPENTLPYVLGSYEGSELPKADNGEKDFLIPPPLSMADL 145


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.140    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,991
Number of Sequences: 27539
Number of extensions: 52010
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 6
length of query: 69
length of database: 12,573,161
effective HSP length: 49
effective length of query: 20
effective length of database: 11,223,750
effective search space: 224475000
effective search space used: 224475000
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)