GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000003-TA|BGIBMGA000003-PA|undefined
         (69 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24440.1 68414.m03079 expressed protein similar to MTD2 [Medi...    26   3.5  
At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone...    25   6.2  
At4g21120.1 68417.m03054 amino acid permease family protein simi...    25   6.2  
At1g75310.1 68414.m08748 DNAJ heat shock N-terminal domain-conta...    25   6.2  
At4g04920.1 68417.m00715 expressed protein                             25   8.2  
At1g66670.1 68414.m07577 ATP-dependent Clp protease proteolytic ...    25   8.2  

>At1g24440.1 68414.m03079 expressed protein similar to MTD2
          [Medicago truncatula] GI:9294812
          Length = 251

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 4  VALKVALVEEDGAPLFVYFLSWLQYMLL 31
          V L++ LV  + AP F++ L W+ +  L
Sbjct: 38 VRLQMKLVCSNLAPFFIFLLQWMDFSCL 65


>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
           putative / oxoglutarate decarboxylase, putative /
           alpha-ketoglutaric dehydrogenase, putative similar to
           SP|P20967 2-oxoglutarate dehydrogenase E1 component,
           mitochondrial precursor (EC 1.2.4.2)
           (Alpha-ketoglutarate dehydrogenase) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF00676:
           Dehydrogenase E1 component
          Length = 1025

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 34  KISGIPQAEYESSTDVLPEDLD 55
           K+S I   EYE+S D +P+  D
Sbjct: 553 KVSSILNEEYEASKDYIPQKRD 574


>At4g21120.1 68417.m03054 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 594

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 8   VALVEEDGAPLFVYFLSWLQYM-LLFVKISGIPQAEYESSTDVLP 51
           +A+V   G+  F Y  S +  + +LFV I+G  +A+ ++ +D  P
Sbjct: 217 LAVVGTKGSSRFNYIASIIHMVVILFVIIAGFTKADVKNYSDFTP 261


>At1g75310.1 68414.m08748 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q27974
           Auxilin {Bos taurus}; contains Pfam profile PF00226:
           DnaJ domain
          Length = 1448

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 34  KISGIPQAEYESSTDVLPEDLDTFDLL 60
           K+ G+P+   +S++D  PE+L+  D++
Sbjct: 407 KLWGVPEGLLKSTSDHKPEELEEQDII 433


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 16  APLFVYFLSWLQYMLLFVKISGIPQAEYESS 46
           APL  Y  SW +Y++  +K  G   ++ +SS
Sbjct: 382 APLAAYLFSWQEYLISEIK-QGKKPSDQDSS 411


>At1g66670.1 68414.m07577 ATP-dependent Clp protease proteolytic
           subunit (ClpP3) identical to ATP-dependent Clp protease
           (nClpP3) GI:5360591 [Arabidopsis thaliana]
          Length = 309

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 31  LFVKISGIPQAEYESSTDVLPEDLDTFDLLQRARLDALV 69
           +F +I+G P++E ES TD     L+ ++  +   +DA++
Sbjct: 219 IFSRITGKPESEIESDTD-RDNFLNPWEAKEYGLIDAVI 256


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.140    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,682
Number of Sequences: 28952
Number of extensions: 48452
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 6
length of query: 69
length of database: 12,070,560
effective HSP length: 49
effective length of query: 20
effective length of database: 10,651,912
effective search space: 213038240
effective search space used: 213038240
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)