Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000002-TA|BGIBMGA000002-PA|undefined
         (1124 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   1.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   2.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   8.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 4    FTNHLSNAKLVLEGVTPLEIKSRSQQXXXXXXXXXXXXXXFQLPPPS 50
            + +HLS    V +GV P  +  +S Q                +PPPS
Sbjct: 1069 YRHHLSKMHFVKDGVIPDPVALKSAQQGSSSSSEGVPLKGTAVPPPS 1115


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 6/146 (4%)

Query: 484 SILQSISRDA-LEHGVAT-EQELRDSFDRMEKTVLKVALVGREGASLPV-YFLSWLQSKL 540
           S +  +S+   L H + T + E+ D  +     +L            P+ Y L + ++KL
Sbjct: 655 STIHEVSKAGELIHKIETNDHEIIDKIEMFSLQILNERAGFSAAGFFPIDYSLVFSETKL 714

Query: 541 LFYKVRAAPRAECGLVCTCHKAACDCWQLSELPEEEMEDKPVDY-TKLDNFEIMQRARWQ 599
           L +K+ +   A  GLV         C  ++     E   K +++  KL +  +M   + Q
Sbjct: 715 LLFKITSVMIAVSGLVYIA--TVWICTLMNRCKFSEFMTKLLEFDVKLQSDRLMIDYKTQ 772

Query: 600 LERGAVERAARLVYATGTRRDDFILK 625
                +    + V+  G +  D++ K
Sbjct: 773 KTGSKIHLFVKCVFLMGYQIFDWVQK 798


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 782 PPVVTKDVCEIEKCLTDLADTALN---NYGTARDACAYYNKLVEETMLDFSMSSLGELRH 838
           P + T ++  +      L   AL    N  + R     YN L   + +     SL ELRH
Sbjct: 461 PALSTPNLLSLSLAFNSLPTVALEVAGNISSLRYLNLDYNDL---SAVPIVTHSLTELRH 517

Query: 839 AMLERQDLVKTSVDNANYAVSRLDEL 864
             LE   +   S  +   A ++L+EL
Sbjct: 518 LSLEGNPITTLSNTSLLGAANQLEEL 543


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,567
Number of Sequences: 317
Number of extensions: 7439
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 1124
length of database: 114,650
effective HSP length: 64
effective length of query: 1060
effective length of database: 94,362
effective search space: 100023720
effective search space used: 100023720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)