Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000002-TA|BGIBMGA000002-PA|undefined
(1124 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 39 0.003
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 35 0.056
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 33 0.30
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 31 1.2
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 30 1.6
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 30 1.6
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 30 1.6
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 30 1.6
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 30 2.1
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 29 2.8
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 29 2.8
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce... 29 3.7
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 29 3.7
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 29 4.8
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 29 4.8
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 28 6.4
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 28 8.4
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 39.1 bits (87), Expect = 0.003
Identities = 56/260 (21%), Positives = 97/260 (37%), Gaps = 12/260 (4%)
Query: 787 KDVCEIEKCLTDLADTALNNYGTARDACA-YYNKLVEETMLDFSMSSLGELRHAMLERQ- 844
KD E LT D N +G ++L + L+ S+++L E ++ LE
Sbjct: 701 KDFIEEHSKLTKQLDDIKNQFGIISSKNRDLLSELEKSKSLNNSLAAL-ESKNKKLENDL 759
Query: 845 DLVKTSVDNANYAVSRLDELTRYFECGVQAPKESLDNTKALLKDYRDKIQTTSANYQWEN 904
+L+ ++ N R E +A ++L N + ++ D ++K+ S Q E
Sbjct: 760 NLLTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENIISDLKNKLSEESTRLQ-EL 818
Query: 905 DRSLAMDK-QWQMVGEVVEKYSAETQQMFPAPRRGQTDTDLLLIHATRYSEELRAANEHM 963
L DK Q + + E + + E M + + L + E++ N+
Sbjct: 819 QSQLNQDKNQIETLNERISAAADELSSMESINKNQANELKLAKQKCSNLQEKINFGNKLA 878
Query: 964 ISECLKRQRAEHE---ETLRQRVLQKEIEA----KARLNKLIAEKVAAEKLVLAAQLAEM 1016
K E + T L KE++ L + + EK V + E+
Sbjct: 879 KEHTEKISSLEKDLEAATKTASTLSKELKTVKSENDSLKSVSNDDQNKEKSVNNEKFKEV 938
Query: 1017 RSKLNVVEEKLNGEDDEFVR 1036
L EKLN D+E R
Sbjct: 939 SQALAEANEKLNARDEEIER 958
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 721
Score = 35.1 bits (77), Expect = 0.056
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 3/134 (2%)
Query: 873 QAPKESLDNTKALLKDYRDKIQTTSANYQWENDRSLAMDKQWQMVGEVVEKYSAETQQMF 932
+A E A +K+ + KI+ + Q + + ++D V + + ++
Sbjct: 334 EAGFEDESQLNAQVKNVQAKIRRAQRDQQRQEESEGSLDVTEIDVEQAFPLLNVPDAELD 393
Query: 933 PAPRRGQTDTDLLLIHATRYSEELRAANEHMISECLKRQRAEHEETLRQRVLQKEIEAKA 992
A R + L+ Y +RA E I E + +RAE +E LR + K
Sbjct: 394 EAGLRQKRHQRLM---KANYDARVRAKAEKAIEEAAEAERAEADERLRLENFSTWVNEKR 450
Query: 993 RLNKLIAEKVAAEK 1006
+K++ EK++ K
Sbjct: 451 ETHKILLEKISKNK 464
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 32.7 bits (71), Expect = 0.30
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 954 EELRAANE-HMISECLKRQRAEHEETLRQR--VLQKEIEAKAR--LNKLIAEKVAAEKLV 1008
+ LR E ++ E +R++ + EE R+R +L+KE E K R IA A +
Sbjct: 691 QRLREEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRLREAKIAAFFAPNQTK 750
Query: 1009 LAAQLAEMRSKLNVVEEK--LNGEDDEFVRTVLKSIPDYVRDEGIELESVLRKKYYEASS 1066
+ S+L + E+K L ++D+ +L S+P+ +R I L++ ASS
Sbjct: 751 EGSDGCTTSSQLGLFEKKGDLVNDEDKLSSHLLDSVPNALRQAPIGLKNTNNLSERNASS 810
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.7 bits (66), Expect = 1.2
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 939 QTDTDLLLIHATRYSEELRAANEHMISEC-------LKRQRAEHEETLRQRVLQKEIEAK 991
++D + L+ S EL A EH ++ + R R++ E T + +KE E
Sbjct: 1534 RSDKEGLVQQVQNLSAELAALREHSPTQGSLENADEIARLRSQLESTKQYYEKEKETEIL 1593
Query: 992 ARLNKLIAEKVAAEKLVLAAQLAEMRSKLNVVEEKLNGEDDE 1033
A ++L+AEK K L QL E ++ +EE+ E
Sbjct: 1594 AARSELVAEK-EKTKEELENQLNEKSQRIKELEEQAQKNSSE 1634
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 948 HATRYSEELRAANEHMIS-ECLKRQRAEHEETLRQRVLQKEIEAKARLNKLIAEKVAAEK 1006
H+T SE+L ++++ S + +R ++ L+ R+ Q E + NKL+AE++ K
Sbjct: 411 HST--SEKLEELSKYVASIQDKERNNGQNALELQARIQQLERRNEDMYNKLLAEEIIRRK 468
Query: 1007 LVLAAQLAEMRSKLNV---VEEKLNGEDDEFVRTVLKSIPD 1044
L + E++ + V V L E+ E+ + PD
Sbjct: 469 --LHNDIQELKGNIRVFCRVRPLLPSEESEYCIADVLQFPD 507
Score = 29.9 bits (64), Expect = 2.1
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 786 TKDVCEIEKCLTDLADTALNNYGTARDACAYYNKLVEETMLDFSMSSLGELRHAMLERQD 845
TK +C+ L DLA + +Y A ++L E ++ S+S LG++ HA+ +
Sbjct: 709 TKQICKGTLNLVDLAGSERLSYSQAVG-----DRLRETQAINKSLSCLGDVIHALGNASN 763
Query: 846 LVKTSVDNANYAVSRLDELTRYFECGVQAPKESLDNTKALLKDYRDKIQT 895
+ Y S+L L +Y G A N L + D + +
Sbjct: 764 STTKEKSHIPYRNSKLTYLLKY-SLGKGAKTLMFVNVSPLKSQFMDTLNS 812
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 814
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 921 VEKYSAETQQMFPAPRRGQTDTDLLLIHATRYSEELRAANEHMISECLKRQRAEHEETLR 980
+E A+++ A G TD+ ++ H T Y E + E K + + L
Sbjct: 641 LEPKLAKSKPELLAKEEGITDSWIVKHHETLYELEKEKIKKKFDRENEKLAAEDPKSVLP 700
Query: 981 QRVLQKEIEAKARLNKLIAEKVAAEKLVLA-AQLAEMRSKLNVVEEKLN 1028
+ L+ ++A L K + ++ ++K+ + + ++ +LN + E++N
Sbjct: 701 ESELEVRLKAADELKKALDAELKSKKVDPGRSSMEQLEKRLNKLNERIN 749
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 30.3 bits (65), Expect = 1.6
Identities = 38/199 (19%), Positives = 79/199 (39%), Gaps = 6/199 (3%)
Query: 851 VDNANYAVSRLDELTRYFECGVQAPKESLDNTKALLKDYRDKIQTTSANYQWENDRSLAM 910
V+ AN V + E E V E + A + + + + +D S +
Sbjct: 890 VERANSRVEVVHERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTL 949
Query: 911 DKQWQMVGEVVEKYSAETQQMFPAPRRGQTDTDLLLIHATRYSEELRAANEHMISECLKR 970
+K+ + + + S++ +++ D H + + + N ++ K
Sbjct: 950 EKKLSSIKKDEQTISSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELNEKL 1009
Query: 971 QRAEHEETLRQRVLQKEIEAKARLNKLIAEKVAAEKLVLAAQLAEMRSKLNVVEEKLNGE 1030
R + E L+QR +++ N + ++ + +QLA + SK + E +LN +
Sbjct: 1010 MRLDDELLLKQRSYDTKVQELREENASLKDQCRTYE----SQLASLVSKYSETESELNKK 1065
Query: 1031 DDEFVRTVLKSIPDYVRDE 1049
+ E V K I +Y RD+
Sbjct: 1066 EAELV-IFQKEITEY-RDQ 1082
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 468 HVAAVRSAGKDDKLVQSILQSISRDALEHGVATEQELRDSFDRMEKTVLKVALVGRE 524
HV ++ A KDD+L + I + + ++EL+ FD + K + K + E
Sbjct: 396 HVNTLKEATKDDELAALASRVIEKIVDSGPILDKEELQTKFDTLSKEIYKTCFLTTE 452
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 732 TYKEFIL-QCTEDAKKYLNSYVRDDKPKQCSFEEGSALSNVENESPCDTLPPPVVTKD 788
TYK ++ + E A + S+ + + +Q S E +ALS EN++P + P T D
Sbjct: 404 TYKPSLMPEFLEKASTH-GSFAKQKEGEQTSLSEKTALSEPENKTPVFSFKAPSATTD 460
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 839 AMLERQDLVKTSVDNANYAVSRLDELTRYFECGVQAPKESLDNTKALLKDYRD 891
A+LER ++ +++ L E+ +E ++ ++ L+N +AL+ Y D
Sbjct: 340 ALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEALISHYDD 392
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 994 LNKLIAEKVAAEKLVLAAQLAEMRSKLNVVEEKL-NGED---DEFVRTVLKSIPDYVRDE 1049
LNKL + ++++L + +L + +++ E L +G+ +EF + K DY
Sbjct: 600 LNKL--SRFSSDRLFTSHELVAIAELISLNEPPLESGKKFYYEEFQKACQKKRDDYRYSP 657
Query: 1050 GIELESVLRKKYYEASSTHPCPGP 1073
IE ++ R+K+ +++ P P P
Sbjct: 658 EIEFKAAFREKFLQSNEKVPFPRP 681
>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 827 DFSMSSLGELRHAMLERQDLVKTSVDNANYAVSR-LDELTRYFECGVQAPKESLDNTKAL 885
DF + LG L+HA VK V+ + SR +DE Y E G + +D K
Sbjct: 170 DFLLDQLGNLQHA-------VKRVVEASPTVHSREVDERITYLEKGYERLSNPIDQQKDF 222
Query: 886 LKDYRDKIQTTSANYQWEND 905
+ K+++T AN + N+
Sbjct: 223 WSHHLSKLEST-ANTETANN 241
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 29.1 bits (62), Expect = 3.7
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 970 RQRAEHEETLRQRVLQKEIEAKARLNKLIAEKVAAEKLVLAAQLAEMR---SKLNVVEEK 1026
R R E L Q+EI A R + L K A K +LA+ + S++N +
Sbjct: 85 RVRLERMNDLEIEGAQEEIRATIRDDLLEMLKKRAFKKKAERELAQRKDRSSQVNTPDLS 144
Query: 1027 LNGEDDEFVRTV-LKSIPDYVRDEGIELESVLRKKYYEASSTHPCPGPAVGQ 1077
DD F+ L+S R+ L+SVL + ++SS P P A+ Q
Sbjct: 145 QRPSDDSFLSNEKLRSSEKLNRN----LQSVLSSEAVDSSSGSPSPPMALSQ 192
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 1030 EDDEFVRTVLKSIPDYVRDEGIELESVLRKKYYEASSTHP 1069
+ + T K I YV+DEG+ E++++K + S+ P
Sbjct: 113 QQGHILATSWKQISIYVKDEGLRTETIVKKTEHADSNHQP 152
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.7 bits (61), Expect = 4.8
Identities = 41/196 (20%), Positives = 87/196 (44%), Gaps = 15/196 (7%)
Query: 831 SSLGELRHAMLERQDLVKTSVDNANYAVSRLDELTRYFECGVQAPKESLDNTKALLKDYR 890
S L E+ +++ + + +++D+ + + L + G + ++ T+ +LK+
Sbjct: 1337 SKLSEVEMKLVDTRKELNSALDSCKKREAEIHRLKEHRPSGKENNIPAVKTTEPVLKNIP 1396
Query: 891 DKIQTTSANYQWENDRSLAMDKQWQMVGEV-VEKYSAETQ-------QMFPAPRRGQTDT 942
+ T + Q N + + + +EK++ E Q ++ P P GQ+
Sbjct: 1397 QR--KTIFDLQQRNANQALYENLKRDYDRLNLEKHNLEKQVNELKGAEVSPQPT-GQSLQ 1453
Query: 943 DLLLIHATRYSEELRAANEHMISECLKRQRAEHEETLRQRVLQKEIEAKARLNKLIAEKV 1002
+ L HA EL+A + + SE K + + R++ LQK I + ++NK V
Sbjct: 1454 HVNLAHAI----ELKALKDQINSEKAKMFSVQVQYEKREQELQKRIASLEKVNKDSLIDV 1509
Query: 1003 AAEKLVLAAQLAEMRS 1018
A + +A+ E+R+
Sbjct: 1510 RALRDRIASLEDELRA 1525
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 365 IKAERVEREKEFLKRVSATSVELRGVAGGSDRPT-NGACRVAEPGAAGRGPQEPPGAAQE 423
I+AE ER + + ++ ++E AG T A VA P A G E AA+E
Sbjct: 32 IEAE-AERVESLISELNGKNIEELIAAGNEKLSTVPSAGAVATPAAGGAAGAEATSAAEE 90
Query: 424 ASE 426
A E
Sbjct: 91 AKE 93
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 577 MEDKPVDYTKLDNFEIMQRARWQLERGAVERAARL 611
+EDK VD + +F+I +R L++ ER R+
Sbjct: 557 LEDKKVDCLPIQSFKIAERKALDLKKEVAEREKRI 591
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,996,507
Number of Sequences: 5004
Number of extensions: 145380
Number of successful extensions: 484
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 22
length of query: 1124
length of database: 2,362,478
effective HSP length: 80
effective length of query: 1044
effective length of database: 1,962,158
effective search space: 2048492952
effective search space used: 2048492952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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