GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000002-TA|BGIBMGA000002-PA|undefined
         (1124 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   3.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 739 QCTEDAKKYLNSYVRDDKPKQCSFEEGSALSNVENESPCDTL 780
           Q  E +   LN+ V          EEG  ++ V  E P DTL
Sbjct: 32  QSVEFSPMELNALVGTPAAPNMPAEEGEGMAGVTGEEPFDTL 73


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 57  EEKKLGTPDVDTPATVVQT 75
           +E K G+ D  TPATV  T
Sbjct: 204 DESKAGSTDASTPATVTTT 222


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,919
Number of Sequences: 429
Number of extensions: 9546
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 2
length of query: 1124
length of database: 140,377
effective HSP length: 65
effective length of query: 1059
effective length of database: 112,492
effective search space: 119129028
effective search space used: 119129028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)