Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000001-TA|BGIBMGA000001-PA|undefined
         (495 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   0.52 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   1.6  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   4.9  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   4.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 26.2 bits (55), Expect = 0.52
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 325 VDKTPIDKVEEN--STTTAKANVLKTENDEKSNEPDSDVN 362
           VD T ++  EE+  ++TT  +NV   + + K  E DS+ N
Sbjct: 425 VDPTQVESEEEDEETSTTVFSNVEVVQEEAKKEESDSNNN 464


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 307 IVSNERNEVTAKDDSANDVDKTPIDKVEENSTTTAKANVLKTENDEK-SNEP 357
           I+SN   E    D ++N +  TP+      +T T       T+   K +N+P
Sbjct: 138 ILSNRFGENEEADAASNVISSTPLPPTTSTTTRTTLTTKFTTKPSTKPTNKP 189


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 64  VPLGLMLVLSMVHSQIVSTTE 84
           VP G +  L  +HS +V+T+E
Sbjct: 212 VPTGTIKTLVQMHSNLVTTSE 232


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 64  VPLGLMLVLSMVHSQIVSTTE 84
           VP G +  L  +HS +V+T+E
Sbjct: 212 VPTGTIKTLVQMHSNLVTTSE 232


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.128    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,957
Number of Sequences: 317
Number of extensions: 4142
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 495
length of database: 114,650
effective HSP length: 60
effective length of query: 435
effective length of database: 95,630
effective search space: 41599050
effective search space used: 41599050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)