Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40058
         (886 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K7M1 Cluster: Putative uncharacterized protein; n=4; ...    35   3.2  
UniRef50_A4BWB2 Cluster: Putative uncharacterized protein; n=2; ...    34   4.2  
UniRef50_Q14M10 Cluster: Hypothetical transmembrane protein; n=1...    34   5.5  
UniRef50_UPI00006CFB1B Cluster: C2 domain containing protein; n=...    33   7.3  

>UniRef50_A5K7M1 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 154

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 21/82 (25%), Positives = 41/82 (50%)
 Frame = +1

Query: 115 LSHHKASR*TGSRSTLWYTAAFYFIVRNLFKELLRLSQNWLYNLNKTLCIRREMQ*ITKN 294
           +SH K  + T +    WY   F  +V N  K++ R   N + NL +  C++ +++    N
Sbjct: 68  ISHIKGEKCTDTEVLAWYLKKFEHVVINSTKKVKRTYFNLINNLIQDKCVKAKLE----N 123

Query: 295 NNAILSNLNRYMDSFKKKRSLE 360
           N   L++   ++    K+R+L+
Sbjct: 124 NKRYLTHNEHFILWAWKRRALK 145


>UniRef50_A4BWB2 Cluster: Putative uncharacterized protein; n=2;
           Polaribacter|Rep: Putative uncharacterized protein -
           Polaribacter irgensii 23-P
          Length = 636

 Score = 34.3 bits (75), Expect = 4.2
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = -3

Query: 377 FAYKVLSRLRFFLNESMYLFKLLNIALLFFVIYCISRLIQSVLFRLYSQFCDKRNNSLN 201
           F  KV   L+F L+ + ++   LNIA   F IY   +L+Q V++ +Y  F +K +  L+
Sbjct: 319 FLAKVFPSLQFGLDINHWVLLGLNIAKTIFWIYVFLKLVQVVMY-IYGIFAEKSHGRLD 376


>UniRef50_Q14M10 Cluster: Hypothetical transmembrane protein; n=1;
           Spiroplasma citri|Rep: Hypothetical transmembrane
           protein - Spiroplasma citri
          Length = 247

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
 Frame = -3

Query: 386 IHFFAY-KVLSRLRFFLN-ESMYLFKLLNIALLFFVIYCISRLIQSVLFRLYSQFCDKRN 213
           I FF Y  ++ +L+  +  E++Y F L+ +  +F+ I+ IS +I  +LFRLY  +  K N
Sbjct: 115 ILFFGYTSIIFQLQNIIAYETIYSF-LVILCYVFYAIFTISFIIMLILFRLYIGYLKKIN 173

Query: 212 N 210
           +
Sbjct: 174 D 174


>UniRef50_UPI00006CFB1B Cluster: C2 domain containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: C2 domain containing
            protein - Tetrahymena thermophila SB210
          Length = 1517

 Score = 33.5 bits (73), Expect = 7.3
 Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
 Frame = -3

Query: 344  FLNESMYLFKLLNIALLFF----VIYCISRLIQSVLFRLYSQFCDK 219
            F N+ +Y++ +L+ A+ FF    +  CIS ++QS +F+L  Q C++
Sbjct: 1383 FKNKLVYIYIILSAAVCFFKPNFIDVCISLILQSDIFKLNPQNCNR 1428


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 829,685,748
Number of Sequences: 1657284
Number of extensions: 16086163
Number of successful extensions: 33224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33210
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)