Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40045
         (882 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MA79 Cluster: TIN-ag-RP; n=1; Bombyx mori|Rep: TIN-ag...    55   3e-06
UniRef50_Q98RQ9 Cluster: Putative uncharacterized protein orf446...    36   1.8  
UniRef50_Q25814 Cluster: Rpl6 protein; n=2; Plasmodium|Rep: Rpl6...    33   9.6  

>UniRef50_A0MA79 Cluster: TIN-ag-RP; n=1; Bombyx mori|Rep: TIN-ag-RP
           - Bombyx mori (Silk moth)
          Length = 404

 Score = 54.8 bits (126), Expect = 3e-06
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = +3

Query: 3   YFRIARGHSGTGIESSVLTVLPYVS 77
           YFRIARGHSGTGIESSVLTVLPYVS
Sbjct: 380 YFRIARGHSGTGIESSVLTVLPYVS 404


>UniRef50_Q98RQ9 Cluster: Putative uncharacterized protein orf446;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf446 - Guillardia theta (Cryptomonas phi)
          Length = 446

 Score = 35.5 bits (78), Expect = 1.8
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
 Frame = -1

Query: 828 NLRVKKFFWIHQDLGHSEIPLIRFKSFNSPVVSNFFLISYMVIFSNDKLPNIPHFHWVSL 649
           NL + KF +I + +      LI  K  N   ++ +F I + + F+N  L  I +F+   +
Sbjct: 233 NLNIPKFVFILRRIIDLNKHLIYPKKNNHRNMNIYFKIKFNIFFNNTLLQLIYYFNSKKI 292

Query: 648 NNDVRTNYKVY**VYNKMTNKYSYIIITI-----VCN*YFI*ILGIFWKN 514
           ++++  N+K    ++N+    ++Y +I       +CN Y+   L  F+KN
Sbjct: 293 SSNIIKNFKEI--IFNREFILHTYFLIKFEIFRQICN-YYRYCLSNFYKN 339


>UniRef50_Q25814 Cluster: Rpl6 protein; n=2; Plasmodium|Rep: Rpl6
           protein - Plasmodium falciparum
          Length = 168

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 21/67 (31%), Positives = 36/67 (53%)
 Frame = -3

Query: 586 IQLYNNNNCMQLIFYINIRDILEKHFC*KNCFFFSYLIVR*RKYFFINEKQLIRYKKNSF 407
           I ++ NNN    I+ INI + +  +F   N ++F + +    KY F N    I+YKK   
Sbjct: 31  IYIFKNNN---KIYNINILNNIYIYFIKNNIYYFIFKMY---KYIFSNIFNKIQYKKYQL 84

Query: 406 IVSMDGV 386
           I+++ G+
Sbjct: 85  ILNIIGI 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,563,097
Number of Sequences: 1657284
Number of extensions: 11193132
Number of successful extensions: 21003
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21001
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79112361923
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)