Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30011
         (620 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    39   0.11 
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    34   3.1  
UniRef50_Q4QIH1 Cluster: Putative uncharacterized protein; n=3; ...    34   3.1  
UniRef50_P61243 Cluster: Protein ycf2; n=1; Physcomitrella paten...    33   4.2  
UniRef50_Q54TM1 Cluster: Putative uncharacterized protein; n=1; ...    33   7.3  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 38.7 bits (86), Expect = 0.11
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +3

Query: 3    VLSGRQQLGSAPGIADVHEQR 65
            VLSGRQ+LGSAPGIA+VH +R
Sbjct: 966  VLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 91  TAHLIVSGHRCSWTSAIPGAEP 26
           T +L+   HR SWTS IPGA+P
Sbjct: 37  TIYLVDDNHRHSWTSTIPGAQP 58


>UniRef50_Q4QIH1 Cluster: Putative uncharacterized protein; n=3;
            Leishmania|Rep: Putative uncharacterized protein -
            Leishmania major
          Length = 2542

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +2

Query: 446  MFILQACILLSRLESRQRNFQLSLNIYKLRITAT---GLSSAEQFHQLGGRSFFCHQPP 613
            MF LQ  +LL R  +  R   ++  +Y LR+TA    G   A ++   GGR++F + PP
Sbjct: 1824 MFELQGPVLLLRFRAA-RPHVVNDTVYPLRVTAVNTLGAMLASEYVLAGGRAYFLNLPP 1881


>UniRef50_P61243 Cluster: Protein ycf2; n=1; Physcomitrella
           patens|Rep: Protein ycf2 - Physcomitrella patens (Moss)
          Length = 2259

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = -1

Query: 320 CYHYNFKIKF*---CSYFDQSSKFYFSSENYISIN-LIDILNYIKCETITKTLNRFINIX 153
           C +YN++ KF    C     + K   S++N I  N LI  +    CE +   +   +N+ 
Sbjct: 227 CQNYNWETKFNFIFCKTIKNNKKLNLSTDNKILTNSLIFQIFSAFCEKLLFEIENPLNLN 286

Query: 152 XXXXXXXSETNPVFFLFSRAY 90
                   + N +FF FS++Y
Sbjct: 287 QLNSTIKLKNNQLFFSFSKSY 307


>UniRef50_Q54TM1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1389

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 332 LRLKCYHYNFKIKF*CSYFDQ-SSKFYFSSENYISINLIDILN-YIKCETITKTLNRFIN 159
           L +K Y Y F   F  +   +  S F  S EN  S+  I + N  I CET+ + ++R +N
Sbjct: 423 LSIKNYFYEFSDYFISTQLKELKSLFEISKENSESLYQISVKNNMITCETLKQRISRIVN 482

Query: 158 I 156
           +
Sbjct: 483 L 483


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,745,424
Number of Sequences: 1657284
Number of extensions: 10429293
Number of successful extensions: 21569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21567
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)