Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20171
         (585 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1Z9N0 Cluster: CG8479-PA, isoform A; n=6; Endopterygot...    78   2e-13
UniRef50_O60313 Cluster: Dynamin-like 120 kDa protein, mitochond...    52   8e-06
UniRef50_Q5U3A7 Cluster: Dynamin-like 120 kDa protein, mitochond...    52   8e-06
UniRef50_UPI0000E49010 Cluster: PREDICTED: similar to Optic atro...    44   0.002
UniRef50_Q18965 Cluster: Putative uncharacterized protein eat-3;...    44   0.003
UniRef50_A3UJ51 Cluster: Transcriptional regulator, AraC family ...    33   5.0  
UniRef50_O52060 Cluster: O antigen polymerase; n=5; Salmonella e...    33   6.6  

>UniRef50_A1Z9N0 Cluster: CG8479-PA, isoform A; n=6;
           Endopterygota|Rep: CG8479-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 972

 Score = 77.8 bits (183), Expect = 2e-13
 Identities = 32/45 (71%), Positives = 40/45 (88%)
 Frame = +1

Query: 373 RCYGMLVARAIRGVLKIRYLVLGGAVGGGMTLNKKYAEWKDGLPD 507
           R YGMLV R +RG LK+RY+VLGGA+GGG++L+KKY EWKDGLP+
Sbjct: 76  RGYGMLVVRILRGALKLRYIVLGGAIGGGVSLSKKYEEWKDGLPN 120


>UniRef50_O60313 Cluster: Dynamin-like 120 kDa protein,
           mitochondrial precursor (Optic atrophy protein 1)
           [Contains: Dynamin-like 120 kDa protein, form S1]; n=47;
           Eumetazoa|Rep: Dynamin-like 120 kDa protein,
           mitochondrial precursor (Optic atrophy protein 1)
           [Contains: Dynamin-like 120 kDa protein, form S1] - Homo
           sapiens (Human)
          Length = 960

 Score = 52.4 bits (120), Expect = 8e-06
 Identities = 26/58 (44%), Positives = 35/58 (60%)
 Frame = +1

Query: 334 LLYKPIDTSHVQRRCYGMLVARAIRGVLKIRYLVLGGAVGGGMTLNKKYAEWKDGLPD 507
           L + PI   +  RR +    AR    +LK+RYL+LG AVGGG T  K + +WKD +PD
Sbjct: 73  LKFSPIKYGYQPRRNFWP--ARLATRLLKLRYLILGSAVGGGYTAKKTFDQWKDMIPD 128


>UniRef50_Q5U3A7 Cluster: Dynamin-like 120 kDa protein,
           mitochondrial precursor; n=5; Coelomata|Rep:
           Dynamin-like 120 kDa protein, mitochondrial precursor -
           Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 966

 Score = 52.4 bits (120), Expect = 8e-06
 Identities = 23/39 (58%), Positives = 28/39 (71%)
 Frame = +1

Query: 391 VARAIRGVLKIRYLVLGGAVGGGMTLNKKYAEWKDGLPD 507
           VAR    +LK+RY++LG AVGGG T  K Y EWK+ LPD
Sbjct: 89  VARLAARLLKLRYILLGSAVGGGYTAKKTYDEWKEMLPD 127


>UniRef50_UPI0000E49010 Cluster: PREDICTED: similar to Optic atrophy
           1 (human); n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to Optic atrophy 1 (human) -
           Strongylocentrotus purpuratus
          Length = 686

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = +1

Query: 403 IRGVLKIRYLVLGGAVGGGMTLNKKYAEWKDGLPD 507
           I  +L+IRYLV+G AV GG +L   Y  WK+ +PD
Sbjct: 87  ITRLLRIRYLVIGSAVAGGTSLKMTYNSWKESIPD 121


>UniRef50_Q18965 Cluster: Putative uncharacterized protein eat-3;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein eat-3 - Caenorhabditis elegans
          Length = 934

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 310 SIWTGRSMLLYKPIDTSHVQ-RRCYGMLVARAIRGVLKIRYLVLGGAVGGGMTLNKKYAE 486
           ++++ +  LL K     ++Q  R +  + A A R +LK+RY +  G +GG +     Y E
Sbjct: 46  ALFSKKGGLLQKRQTVINLQSERAFIGIAASAARHLLKLRYFIATGVIGGSVAARTWYEE 105

Query: 487 WKDGLPD 507
           WK  LPD
Sbjct: 106 WKSNLPD 112


>UniRef50_A3UJ51 Cluster: Transcriptional regulator, AraC family
           protein; n=1; Oceanicaulis alexandrii HTCC2633|Rep:
           Transcriptional regulator, AraC family protein -
           Oceanicaulis alexandrii HTCC2633
          Length = 381

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 422 IFNTPLIALATSIP*HLLCTWLVSIGLYSSMLRPVHIENATARLSMLTHDVFLNDDLHD 246
           + + PLI L+ ++   + C W+V +GLY     PV+ + A A  ++ T + +    L D
Sbjct: 217 LISNPLIDLSDAL---VECVWIVVVGLYGLWQAPVYRDRADAPPTLETAEKYARSSLSD 272


>UniRef50_O52060 Cluster: O antigen polymerase; n=5; Salmonella
           enterica|Rep: O antigen polymerase - Salmonella enterica
          Length = 391

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 90  IFCYILQTSYVYYVITFSEPVKVMK*FIILKTFFGYLCCS 209
           IF  IL    ++Y+I  ++ +  +K FIIL  FFG +  S
Sbjct: 167 IFTLILLLMIIFYIIFINKKISKLKLFIILSLFFGAIVIS 206


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,644,625
Number of Sequences: 1657284
Number of extensions: 12114835
Number of successful extensions: 28979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28932
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)