Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20148
(679 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P37108 Cluster: Signal recognition particle 14 kDa prot... 62 2e-08
UniRef50_Q17M28 Cluster: Signal recognition particle, 14kD, puta... 59 8e-08
UniRef50_A7SFX5 Cluster: Predicted protein; n=2; Eumetazoa|Rep: ... 58 3e-07
UniRef50_UPI000065D6E4 Cluster: Signal recognition particle 14 k... 56 8e-07
UniRef50_Q9VDL0 Cluster: CG5417-PA; n=4; Diptera|Rep: CG5417-PA ... 56 8e-07
UniRef50_Q5BRK6 Cluster: SJCHGC07887 protein; n=1; Schistosoma j... 52 1e-05
UniRef50_UPI0000E49971 Cluster: PREDICTED: similar to Signal rec... 50 4e-05
UniRef50_Q01AS4 Cluster: Signal recognition particle, subunit Sr... 48 3e-04
UniRef50_O16927 Cluster: Signal recognition particle 14 kDa prot... 40 0.042
UniRef50_Q86AM4 Cluster: Similar to Homo sapiens (Human). Signal... 37 0.52
UniRef50_A5DA33 Cluster: Putative uncharacterized protein; n=1; ... 36 0.91
UniRef50_A7QAR1 Cluster: Chromosome chr5 scaffold_72, whole geno... 34 2.8
UniRef50_A7S751 Cluster: Predicted protein; n=1; Nematostella ve... 34 2.8
UniRef50_UPI00004998B3 Cluster: hypothetical protein 46.t00048; ... 33 4.8
UniRef50_Q54PK4 Cluster: Structural maintenance of chromosome pr... 33 4.8
UniRef50_A7GZG5 Cluster: Abc transporter, ATP-binding protein; n... 33 8.4
>UniRef50_P37108 Cluster: Signal recognition particle 14 kDa
protein; n=27; Euteleostomi|Rep: Signal recognition
particle 14 kDa protein - Homo sapiens (Human)
Length = 136
Score = 61.7 bits (143), Expect = 2e-08
Identities = 25/43 (58%), Positives = 37/43 (86%)
Frame = +1
Query: 127 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPRE 255
MVLL +++FL ELT+LFQK R +GS+ +T+K+YDGR+KP P++
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKK 43
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +3
Query: 285 KCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 401
KCLLRA KKISTVV ++V KF AYSNLL+ +++G
Sbjct: 55 KCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDG 93
>UniRef50_Q17M28 Cluster: Signal recognition particle, 14kD,
putative; n=4; Endopterygota|Rep: Signal recognition
particle, 14kD, putative - Aedes aegypti (Yellowfever
mosquito)
Length = 109
Score = 59.3 bits (137), Expect = 8e-08
Identities = 27/43 (62%), Positives = 33/43 (76%)
Frame = +1
Query: 127 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPRE 255
MVLLSN+EFL +LT L Q AR S T+T+KRYDG +P+PRE
Sbjct: 1 MVLLSNEEFLTQLTLLSQSARSDSSFTVTIKRYDGHDRPKPRE 43
Score = 56.4 bits (130), Expect = 6e-07
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +3
Query: 255 GTPAVKNP-EYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNGXXXXXXXXXX 431
G P + P EY+CL+RA+S+SKK+STVV +V KF +YS +LK++++G
Sbjct: 44 GKPPLPKPAEYQCLIRARSRSKKLSTVVRHDEVAKFMESYSKVLKSNMDGLKKIKKVKNK 103
Query: 432 AMATQ 446
A A Q
Sbjct: 104 AKAAQ 108
>UniRef50_A7SFX5 Cluster: Predicted protein; n=2; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 118
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/50 (50%), Positives = 37/50 (74%)
Frame = +1
Query: 127 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPREELLQLKI 276
MVLL ND FL +LT L QK+R AGS+ +T+K+Y+G+++P+PR K+
Sbjct: 1 MVLLDNDGFLTQLTYLLQKSRTAGSVYITVKKYNGQTRPKPRASKKHAKL 50
Score = 46.4 bits (105), Expect = 6e-04
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +3
Query: 279 EYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVN 398
E KCL RA + KK+ST+V +DV +F AY+N+LK +++
Sbjct: 58 ESKCLFRATNGKKKLSTIVNTKDVNRFQLAYANVLKANMD 97
>UniRef50_UPI000065D6E4 Cluster: Signal recognition particle 14 kDa
protein (SRP14) (18 kDa Alu RNA- binding protein).; n=1;
Takifugu rubripes|Rep: Signal recognition particle 14
kDa protein (SRP14) (18 kDa Alu RNA- binding protein). -
Takifugu rubripes
Length = 103
Score = 56.0 bits (129), Expect = 8e-07
Identities = 22/36 (61%), Positives = 31/36 (86%)
Frame = +1
Query: 148 EFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPRE 255
+FL ELT+LFQK R +GS+ +T+K+YDGR+KP PR+
Sbjct: 3 QFLTELTRLFQKCRTSGSVVITLKKYDGRTKPVPRK 38
Score = 48.0 bits (109), Expect = 2e-04
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +3
Query: 285 KCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 401
KCL+RA KKISTVV ++V KF AYSNLL+ ++G
Sbjct: 50 KCLIRASDGKKKISTVVTTKEVIKFQMAYSNLLRAHMDG 88
>UniRef50_Q9VDL0 Cluster: CG5417-PA; n=4; Diptera|Rep: CG5417-PA -
Drosophila melanogaster (Fruit fly)
Length = 142
Score = 56.0 bits (129), Expect = 8e-07
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +3
Query: 255 GTPAVKNPE-YKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNGXXXXXXXXXX 431
G P + PE Y CL+RAQSKS+KISTVV Q DV + YS +K+ ++G
Sbjct: 77 GRPPLPKPETYMCLMRAQSKSQKISTVVRQEDVPAMMSMYSQFMKSKMDGLKRVKKVKSK 136
Query: 432 AMATQ 446
A AT+
Sbjct: 137 AKATK 141
Score = 51.2 bits (117), Expect = 2e-05
Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 100 SNYCC*IL-TMVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPREELLQLKI 276
S + C I MVLL N F+ L K+ A+ S T+T KRYDG KP PRE L
Sbjct: 24 SRFSCFICHEMVLLDNSNFILRLEKIANAAKKDSSFTLTFKRYDGNDKPVPREGRPPLPK 83
Query: 277 PNT 285
P T
Sbjct: 84 PET 86
>UniRef50_Q5BRK6 Cluster: SJCHGC07887 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC07887 protein - Schistosoma
japonicum (Blood fluke)
Length = 91
Score = 52.0 bits (119), Expect = 1e-05
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +3
Query: 279 EYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 401
E CLLRA ++KISTVV Q+D+ +F+ AYSNLLK +++G
Sbjct: 26 ENSCLLRATLGNQKISTVVHQKDMNRFNQAYSNLLKANIDG 66
>UniRef50_UPI0000E49971 Cluster: PREDICTED: similar to Signal
recognition particle 14kDa (homologous Alu RNA binding
protein); n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to Signal recognition particle 14kDa
(homologous Alu RNA binding protein) -
Strongylocentrotus purpuratus
Length = 86
Score = 50.4 bits (115), Expect = 4e-05
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +3
Query: 279 EYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 401
E+KCL RA + KKISTV+ +DV KF AY+N++K +++G
Sbjct: 27 EHKCLFRATNGKKKISTVISTKDVTKFQMAYANVMKGNMDG 67
>UniRef50_Q01AS4 Cluster: Signal recognition particle, subunit
Srp14; n=2; Ostreococcus|Rep: Signal recognition
particle, subunit Srp14 - Ostreococcus tauri
Length = 222
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +1
Query: 127 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRY-DGRSKPQPR 252
MV L ND FL ELTKLF+++R AG++T TMK + KP+P+
Sbjct: 1 MVQLENDAFLTELTKLFERSREAGTVTCTMKIVNENELKPKPK 43
>UniRef50_O16927 Cluster: Signal recognition particle 14 kDa protein
homolog; n=2; Caenorhabditis|Rep: Signal recognition
particle 14 kDa protein homolog - Caenorhabditis elegans
Length = 116
Score = 40.3 bits (90), Expect = 0.042
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Frame = +1
Query: 136 LSNDEFLAELTKLFQKARLAG--SITMTMKRYDGRSKPQPR 252
+ ND+FL +LT ++ +++ G S+ +TMK YDGR+K P+
Sbjct: 8 IPNDQFLQKLTAFYRDSKIRGPKSVYVTMKPYDGRTKAMPK 48
>UniRef50_Q86AM4 Cluster: Similar to Homo sapiens (Human). Signal
recognition particle 14kD; n=2; Dictyostelium
discoideum|Rep: Similar to Homo sapiens (Human). Signal
recognition particle 14kD - Dictyostelium discoideum
(Slime mold)
Length = 123
Score = 36.7 bits (81), Expect = 0.52
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 279 EYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLL 383
E KCL+RA + KKIST+V +D F Y N+L
Sbjct: 54 ENKCLVRATNGKKKISTIVLAKDKSMFEKNYKNVL 88
Score = 35.9 bits (79), Expect = 0.91
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 130 VLLSNDEFLAELTKLFQKARLAGSITMTMKRY 225
+LL ND FL+ L KL+Q G++ +TMK+Y
Sbjct: 1 MLLDNDAFLSALNKLYQTTSKKGTVWVTMKKY 32
>UniRef50_A5DA33 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 287
Score = 35.9 bits (79), Expect = 0.91
Identities = 28/86 (32%), Positives = 43/86 (50%)
Frame = +1
Query: 85 CLHINSNYCC*ILTMVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPREELL 264
CLH++ NY I T ++L + L E T+L +L S+ + R D K E+
Sbjct: 181 CLHLSENY---IETFIVLKAEIKLEESTQLVDFIKL--SMPLFASRQDKVKKATV--EIY 233
Query: 265 QLKIPNTNAYYGHNLRVKRYQQLWNS 342
L++P T+ Y LR+ Y +LW S
Sbjct: 234 LLQVPGTDMEYKITLRITPY-KLWTS 258
>UniRef50_A7QAR1 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 156
Score = 34.3 bits (75), Expect = 2.8
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 85 CLHINSNYCC*ILTM--VLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQ 246
CL + + C + VLL D FL ELT +F+ + S+ +T+KR +SK Q
Sbjct: 20 CLISETKWICVLFLFCQVLLQLDPFLNELTSMFEHSTTKRSVWVTLKRSSLKSKVQ 75
>UniRef50_A7S751 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 2676
Score = 34.3 bits (75), Expect = 2.8
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 124 TMVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPREELLQLKIPNTNAY 294
T+ L ++ LTKL A S T+ ++ DG S P+ +L+LK+ + N Y
Sbjct: 852 TLFNLDSNTGALSLTKLIDYGNSARSYTLPVQAQDGGSPPRSSTAMLELKVVDVNDY 908
>UniRef50_UPI00004998B3 Cluster: hypothetical protein 46.t00048;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 46.t00048 - Entamoeba histolytica HM-1:IMSS
Length = 103
Score = 33.5 bits (73), Expect = 4.8
Identities = 13/34 (38%), Positives = 25/34 (73%)
Frame = +3
Query: 288 CLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKT 389
CL+RA + SKK +T+V+ ++V KF++ + ++ T
Sbjct: 62 CLVRATNGSKKFATIVKPKEVGKFNSKLTAIMNT 95
>UniRef50_Q54PK4 Cluster: Structural maintenance of chromosome
protein; n=1; Dictyostelium discoideum AX4|Rep:
Structural maintenance of chromosome protein -
Dictyostelium discoideum AX4
Length = 1184
Score = 33.5 bits (73), Expect = 4.8
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Frame = +1
Query: 199 SITMTMKRYDGRSKPQPREEL------LQLKIPNTNAYY--GHNLRVKRYQQLWNSVMSK 354
S+T+T D + P E L Q+ I N Y GHN ++ R Q L++SV
Sbjct: 78 SVTITFNNSDKKQSPAGYEHLDKITVTRQVAIGGRNKYLINGHNAQLSRVQDLFHSVQLN 137
Query: 355 SSQLHILIC*KRVLMV*N 408
+ H LI R+ V N
Sbjct: 138 VNNPHFLIMQGRITKVLN 155
>UniRef50_A7GZG5 Cluster: Abc transporter, ATP-binding protein; n=1;
Campylobacter curvus 525.92|Rep: Abc transporter,
ATP-binding protein - Campylobacter curvus 525.92
Length = 860
Score = 32.7 bits (71), Expect = 8.4
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +1
Query: 148 EFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPREELLQLK---IPNTNAYYGHNLRVK 318
+F L K FQK + + +K D K E + + +P T+A+ L
Sbjct: 51 DFKQNLAKYFQKNQGRNFVNFLVKENDDFIKSYLNEAMREFFGDFMPQTDAFSISVLATS 110
Query: 319 RYQQLWNSVMSKSSQLHILIC*KRV 393
+Y Q S++S SSQL ILI K V
Sbjct: 111 KYAQ---SIISASSQLEILIVYKNV 132
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,483,695
Number of Sequences: 1657284
Number of extensions: 10673593
Number of successful extensions: 26006
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 25328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26003
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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