Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00036
(753 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 106 7e-22
UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 87 3e-16
UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3, p... 74 4e-12
UniRef50_UPI0000498C5A Cluster: small nuclear ribonucleoprotein;... 73 1e-11
UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:... 72 1e-11
UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM doma... 69 9e-11
UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole geno... 69 1e-10
UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=1... 69 1e-10
UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein ... 66 9e-10
UniRef50_Q7RIW4 Cluster: Putative uncharacterized protein PY0350... 64 4e-09
UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 62 1e-08
UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266, w... 59 1e-07
UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145, w... 59 1e-07
UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 58 2e-07
UniRef50_Q8SW39 Cluster: Similarity to SMALL NUCLEAR RIBONUCLEOP... 57 5e-07
UniRef50_A2DK14 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 52 2e-05
UniRef50_Q4Y7X8 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 51 3e-05
UniRef50_Q0UDD7 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_Q9AW42 Cluster: Putative small nuclear ribonucleoprotei... 44 0.005
UniRef50_Q3LW05 Cluster: Spliceosomal snRNA-associated Sm core p... 43 0.009
UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putati... 41 0.038
UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole gen... 37 0.46
UniRef50_A5AUJ3 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like pr... 35 2.5
UniRef50_Q254S4 Cluster: Adherence factor; n=2; Chlamydophila|Re... 34 3.3
UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein... 34 4.3
UniRef50_Q9LMW8 Cluster: F5M15.7; n=3; Arabidopsis thaliana|Rep:... 33 5.7
UniRef50_A3K8E4 Cluster: Type II restriction enzyme, methylase; ... 33 7.6
UniRef50_Q38BA6 Cluster: Small nuclear ribonucleoprotein, putati... 33 7.6
UniRef50_A0D6J1 Cluster: Chromosome undetermined scaffold_4, who... 33 7.6
>UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=40; Fungi/Metazoa group|Rep: Small nuclear
ribonucleoprotein Sm D3 - Homo sapiens (Human)
Length = 126
Score = 106 bits (254), Expect = 7e-22
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TVTYR
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR 51
Score = 78.6 bits (185), Expect = 2e-13
Identities = 41/53 (77%), Positives = 43/53 (81%), Gaps = 3/53 (5%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 401
+DGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 51 RDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=3; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D3 - Caenorhabditis elegans
Length = 136
Score = 87.4 bits (207), Expect = 3e-16
Identities = 39/55 (70%), Positives = 44/55 (80%)
Frame = +1
Query: 106 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRMAELH 270
S+GVPIK+LHEAEGH+VT ET TGEVYRGKL EAEDNMNCQ+ VT+R H
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSH 57
Score = 63.3 bits (147), Expect = 6e-09
Identities = 28/37 (75%), Positives = 33/37 (89%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQG 362
+DGR QL+NV+IRG+KIRF+ILPDMLKNAPMFK G
Sbjct: 52 RDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIG 88
>UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3,
putative; n=12; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmD3, putative - Aspergillus clavatus
Length = 136
Score = 73.7 bits (173), Expect = 4e-12
Identities = 33/50 (66%), Positives = 42/50 (84%)
Frame = +1
Query: 106 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
+IG+PIK+L+EA+GHVVT E +G VYRGKL+EAEDNMN Q+ +TVT R
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTAR 56
Score = 43.6 bits (98), Expect = 0.005
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLK 335
+DGRV+ L+ VYIRGS ++F I+PDML+
Sbjct: 56 RDGRVSHLDQVYIRGSHVKFFIVPDMLR 83
>UniRef50_UPI0000498C5A Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 111
Score = 72.5 bits (170), Expect = 1e-11
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVT 249
M+IG P+K+ HE++G +VT E TGE YRG+++E EDNMNCQ+ VT+T
Sbjct: 1 MNIGAPLKIFHESKGTIVTIEVKTGETYRGRMVETEDNMNCQLRDVTIT 49
Score = 42.7 bits (96), Expect = 0.009
Identities = 15/34 (44%), Positives = 27/34 (79%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 353
+DG ++ E ++IRG+++RF++LP+M KN+P K
Sbjct: 51 KDGSQSRTEYIFIRGNQVRFVVLPEMFKNSPCLK 84
>UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:
F5M15.9 - Arabidopsis thaliana (Mouse-ear cress)
Length = 207
Score = 72.1 bits (169), Expect = 1e-11
Identities = 28/51 (54%), Positives = 40/51 (78%)
Frame = +1
Query: 97 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVT 249
++ S+G+P+K+LHEA GH+VT E +GE+YRG +IE EDN NCQ+ +T T
Sbjct: 1 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYT 51
Score = 33.9 bits (74), Expect(2) = 2e-04
Identities = 13/19 (68%), Positives = 19/19 (100%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIR 308
+DG+V+QLE+V+IRGSK+R
Sbjct: 53 KDGKVSQLEHVFIRGSKVR 71
Score = 33.9 bits (74), Expect(2) = 2e-04
Identities = 12/17 (70%), Positives = 17/17 (100%)
Frame = +3
Query: 306 RFLILPDMLKNAPMFKR 356
RF+++PD+LK+APMFKR
Sbjct: 102 RFMVIPDILKHAPMFKR 118
>UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM domain;
n=5; Apicomplexa|Rep: Small nucealr riboprotein SMD3, SM
domain - Cryptosporidium parvum Iowa II
Length = 143
Score = 69.3 bits (162), Expect = 9e-11
Identities = 29/64 (45%), Positives = 42/64 (65%)
Frame = +1
Query: 94 NVNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRMAELHS 273
++NM+IG+P+K+L+E GH+VT E +G++YRG L EDNMNC + V T R + S
Sbjct: 20 HINMTIGIPLKLLYEGLGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVS 79
Query: 274 SRMC 285
C
Sbjct: 80 LEQC 83
Score = 59.3 bits (137), Expect = 1e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 240 NSHIQDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGN 365
N+ ++DG+ LE Y+RGS+IRF ILPDMLKNAPMFK N
Sbjct: 69 NATMRDGKPVSLEQCYLRGSQIRFCILPDMLKNAPMFKLAAN 110
>UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole genome
shotgun sequence; n=6; Eukaryota|Rep: Chromosome chr6
scaffold_28, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 199
Score = 68.9 bits (161), Expect = 1e-10
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = +1
Query: 97 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
++ S+G+P+K+LHEA GHVV E +GE+YRG +IE +DN NCQ+ +T T +
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVIVELKSGELYRGSMIECKDNWNCQLENITFTVK 53
Score = 61.7 bits (143), Expect = 2e-08
Identities = 24/36 (66%), Positives = 34/36 (94%)
Frame = +3
Query: 249 IQDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 356
++DG+V+QLE+V+IRG K+RF+++PDM KNAPMFKR
Sbjct: 52 VKDGKVSQLEHVFIRGIKVRFMVIPDMRKNAPMFKR 87
>UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=12;
Eukaryota|Rep: Pre-mRNA splicing factor, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 124
Score = 68.9 bits (161), Expect = 1e-10
Identities = 28/50 (56%), Positives = 40/50 (80%)
Frame = +1
Query: 106 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
++GVP+K+LHE+ GH++T E TGE+YRGKL+EAED +N + +TVT R
Sbjct: 3 NLGVPVKLLHESLGHIITVELKTGEMYRGKLMEAEDTLNIALREITVTAR 52
Score = 66.1 bits (154), Expect = 9e-10
Identities = 31/48 (64%), Positives = 36/48 (75%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKSA 395
+DGRV+QLE VYIRGS IRF+I+PD+L APMFKR G GRG A
Sbjct: 52 RDGRVSQLEQVYIRGSMIRFIIVPDLLAQAPMFKRIGPNAMRGRGIGA 99
>UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein
(snrnp),putative; n=1; Eimeria tenella|Rep: small
nuclear ribonucleoprotein (snrnp),putative - Eimeria
tenella
Length = 125
Score = 66.1 bits (154), Expect = 9e-10
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +1
Query: 106 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
S+G+P+K+LHE GH +T ET TG +YRG L AEDNMN + VTVT++
Sbjct: 6 SVGIPVKLLHEGLGHTITVETKTGSLYRGTLENAEDNMNMLIQGVTVTHK 55
Score = 52.0 bits (119), Expect = 2e-05
Identities = 21/34 (61%), Positives = 29/34 (85%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 353
+DG+V LE VYIRGS+++ +I PDML++APMFK
Sbjct: 55 KDGKVLSLEQVYIRGSQVQMVIFPDMLRHAPMFK 88
>UniRef50_Q7RIW4 Cluster: Putative uncharacterized protein PY03502;
n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY03502 - Plasmodium yoelii yoelii
Length = 215
Score = 64.1 bits (149), Expect = 4e-09
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 246
MS+G PIK++HE GH ++ ET +G +YRG L+ AEDNMNC ++ VTV
Sbjct: 1 MSVGTPIKLIHEGIGHTISVETKSGILYRGILLFAEDNMNCLLSNVTV 48
Score = 41.1 bits (92), Expect = 0.029
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +3
Query: 273 LENVYIRGSKIRFLILPDMLKNAPMFKRQGNK 368
L+ VYIRG + F+I PDML+ AP+FK +K
Sbjct: 114 LQQVYIRGGSVSFMIFPDMLRYAPIFKVNKSK 145
>UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=11; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein Sm D3 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 101
Score = 62.1 bits (144), Expect = 1e-08
Identities = 25/46 (54%), Positives = 36/46 (78%)
Frame = +1
Query: 112 GVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVT 249
G+P+K+L+EA+GH+V+ E TG YRGKL+E+ED+MN Q+ V T
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIAT 50
Score = 53.2 bits (122), Expect = 7e-06
Identities = 17/38 (44%), Positives = 32/38 (84%)
Frame = +3
Query: 258 GRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKP 371
G V ++ +++RGS+I+F+++PD+LKNAP+FK+ ++P
Sbjct: 54 GAVTHMDQIFVRGSQIKFIVVPDLLKNAPLFKKNSSRP 91
>UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_266,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 363
Score = 58.8 bits (136), Expect = 1e-07
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
MS+GVP+K++HEA H+VT E TGE++ G + EAED MN ++ V + R
Sbjct: 1 MSLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTR 51
Score = 52.4 bits (120), Expect = 1e-05
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 356
+DGR LE VY+RGS+IRF+++PD+ K APMFK+
Sbjct: 51 RDGRPMSLEQVYLRGSQIRFVVIPDVFKYAPMFKK 85
>UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145,
whole genome shotgun sequence; n=5; Eukaryota|Rep:
Chromosome undetermined scaffold_145, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 58.8 bits (136), Expect = 1e-07
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
MS+GVP+K++HEA H+VT E TGE++ G + EAED MN ++ V + R
Sbjct: 1 MSLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTR 51
Score = 52.4 bits (120), Expect = 1e-05
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 356
+DGR LE VY+RGS+IRF+++PD+ K APMFK+
Sbjct: 51 RDGRPMSLEQVYLRGSQIRFVVIPDVFKYAPMFKK 85
>UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 112
Score = 58.4 bits (135), Expect = 2e-07
Identities = 28/51 (54%), Positives = 33/51 (64%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
MS G+PIK+LHEA VV NTG+ YRG L EDNMNC +T V T +
Sbjct: 1 MSNGIPIKLLHEATNFVVEIHLNTGDSYRGTLKYVEDNMNCWLTNVVHTQK 51
Score = 37.1 bits (82), Expect = 0.46
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 353
+DG+ + + Y+RGS I + LP+ML NA +FK
Sbjct: 51 KDGQQIKFDKTYVRGSNILYFDLPEMLLNARLFK 84
>UniRef50_Q8SW39 Cluster: Similarity to SMALL NUCLEAR
RIBONUCLEOPROTEIN D3; n=1; Encephalitozoon cuniculi|Rep:
Similarity to SMALL NUCLEAR RIBONUCLEOPROTEIN D3 -
Encephalitozoon cuniculi
Length = 87
Score = 56.8 bits (131), Expect = 5e-07
Identities = 24/55 (43%), Positives = 40/55 (72%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRMAEL 267
M++ VP+K+LHE++G +VT ET++G++YRG++ E +D MN + V VT + L
Sbjct: 1 MAVTVPLKLLHESQGFIVTVETSSGDMYRGRVREVDDYMNLVLDDVVVTSNNSSL 55
Score = 33.5 bits (73), Expect = 5.7
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 276 ENVYIRGSKIRFLILPDMLKNAPMF 350
+ V IRGS IRF +LP LK AP F
Sbjct: 58 KEVLIRGSSIRFFVLPPALKFAPFF 82
>UniRef50_A2DK14 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 119
Score = 52.0 bits (119), Expect = 2e-05
Identities = 24/43 (55%), Positives = 30/43 (69%)
Frame = +1
Query: 121 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVT 249
I +LHEA+G VVT ET GE+YRG L +ED MN ++ VT T
Sbjct: 12 IAILHEADGFVVTIETKQGEMYRGTLFGSEDTMNVELHDVTYT 54
Score = 40.7 bits (91), Expect = 0.038
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +3
Query: 276 ENVYIRGSKIRFLILPDMLKNAPMF 350
+ VYIRGS I F +LPDM NAPMF
Sbjct: 64 DKVYIRGSNIVFFVLPDMFANAPMF 88
>UniRef50_Q4Y7X8 Cluster: Small nuclear ribonucleoprotein (SnRNP),
putative; n=4; Plasmodium|Rep: Small nuclear
ribonucleoprotein (SnRNP), putative - Plasmodium
chabaudi
Length = 129
Score = 51.2 bits (117), Expect = 3e-05
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 13/61 (21%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLI-------------EAEDNMNCQMTLVT 243
MS+G PIK++HE GH ++ ET +G +YRG L+ AEDNMNC ++ VT
Sbjct: 1 MSVGTPIKLIHEGIGHTISVETKSGILYRGTLVCSFMLILYFLKDLFAEDNMNCLLSNVT 60
Query: 244 V 246
V
Sbjct: 61 V 61
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK 368
QDG+ LE VYIRG + F+I PDML+ AP+FK +K
Sbjct: 64 QDGKQVLLEQVYIRGGSVSFMIFPDMLRYAPIFKINKSK 102
>UniRef50_Q0UDD7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 80
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/29 (62%), Positives = 25/29 (86%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKN 338
+DGRV+ LE VYIRGS +R+ I+PDML++
Sbjct: 13 RDGRVSHLEQVYIRGSHVRYFIVPDMLRS 41
>UniRef50_Q9AW42 Cluster: Putative small nuclear ribonucleoprotein
Sm D3; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein Sm D3 - Guillardia theta (Cryptomonas
phi)
Length = 79
Score = 43.6 bits (98), Expect = 0.005
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 127 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNC 225
+L E++ +V+T E G +YRGKLI E+NMNC
Sbjct: 9 ILRESKPYVITIECKNGFIYRGKLIHIEENMNC 41
>UniRef50_Q3LW05 Cluster: Spliceosomal snRNA-associated Sm core
protein required for pre-mRNA splicing; n=1;
Bigelowiella natans|Rep: Spliceosomal snRNA-associated
Sm core protein required for pre-mRNA splicing -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 141
Score = 42.7 bits (96), Expect = 0.009
Identities = 15/51 (29%), Positives = 34/51 (66%)
Frame = +1
Query: 94 NVNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 246
+ + ++G+P+K++H+AE H ++ + G++ G+L+ +EDN N + V +
Sbjct: 3 STSKNVGIPLKLIHQAEKHQISVKLKDGKLLIGELMNSEDNWNLCLKKVII 53
>UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putative;
n=6; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 113
Score = 40.7 bits (91), Expect = 0.038
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
M+ +PIKVL +A V+ E TGEVY G + E ++NMN + T T R
Sbjct: 1 MAESIPIKVLFDALHLKVSIEVATGEVYHGTVEELQNNMNVLLKDATKTAR 51
Score = 36.7 bits (81), Expect = 0.61
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +3
Query: 258 GRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGN-----KPTAGRGK 389
G+ ++++V++RGS I F LPD L+ +P R G K T G GK
Sbjct: 53 GKETKMDSVFVRGSNIVFFQLPDALQTSPALLRAGEVVSKAKDTRGDGK 101
>UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_27, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 281
Score = 37.1 bits (82), Expect = 0.46
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 112 GVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVT 249
G+P+ +L A+GH + E GE Y G L+ + MN + V T
Sbjct: 87 GLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT 132
>UniRef50_A5AUJ3 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 394
Score = 35.9 bits (79), Expect = 1.1
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 285 YIRGSKIRFLILPDMLKNAPM--FKRQGNKPTAGRGKSA 395
++ GSK+RF+++PDML NAP+ G+ +G G A
Sbjct: 117 HLIGSKVRFMVIPDMLTNAPVGNISSSGSLGLSGSGTGA 155
>UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm4; n=5; Eukaryota|Rep: Probable U6
snRNA-associated Sm-like protein LSm4 - Oryza sativa
subsp. japonica (Rice)
Length = 147
Score = 34.7 bits (76), Expect = 2.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 115 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVT 249
+P+ +L A+GH + E GE Y G L+ + MN + V T
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT 46
>UniRef50_Q254S4 Cluster: Adherence factor; n=2; Chlamydophila|Rep:
Adherence factor - Chlamydophila felis (strain Fe/C-56)
Length = 3298
Score = 34.3 bits (75), Expect = 3.3
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 358 KGINLLQDEGRVRYCEPKLLVEDEQVEEVGATVEAGK 468
KG++ + DE R+ Y E +L + +++V++ T+E K
Sbjct: 435 KGVDRISDENRIEYLEKELKLSEDEVKQYKETIETNK 471
>UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 177
Score = 33.9 bits (74), Expect = 4.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 115 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVT 249
+P+ +L +GH + E GE Y G L+ ++ MN + V T
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRT 46
>UniRef50_Q9LMW8 Cluster: F5M15.7; n=3; Arabidopsis thaliana|Rep:
F5M15.7 - Arabidopsis thaliana (Mouse-ear cress)
Length = 255
Score = 33.5 bits (73), Expect = 5.7
Identities = 13/18 (72%), Positives = 18/18 (100%)
Frame = +3
Query: 255 DGRVAQLENVYIRGSKIR 308
DG+V+QLE+V+IRGSK+R
Sbjct: 233 DGKVSQLEHVFIRGSKVR 250
>UniRef50_A3K8E4 Cluster: Type II restriction enzyme, methylase;
n=1; Sagittula stellata E-37|Rep: Type II restriction
enzyme, methylase - Sagittula stellata E-37
Length = 1182
Score = 33.1 bits (72), Expect = 7.6
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 355 DKGINLLQDEGRVRYCEPKLLVEDEQVEEVGATVEAGKVGQDHLD-ASVKIFLDSLSCTC 531
+KGI LL D+GR+ Y P + +E + VE G+ +D S +IF ++ T
Sbjct: 623 EKGIQLLNDDGRLGYIAPSVWQMNEYGAGLRGMVETGRHLWGWIDFGSHQIFEEATVYTA 682
Query: 532 LIF 540
L+F
Sbjct: 683 LMF 685
>UniRef50_Q38BA6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Trypanosoma brucei|Rep: Small nuclear
ribonucleoprotein, putative - Trypanosoma brucei
Length = 131
Score = 33.1 bits (72), Expect = 7.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 115 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAE 210
+P++ + EA G +V ET G VY GKL++ +
Sbjct: 7 IPLRAICEATGFLVKVETTDGSVYDGKLMQLD 38
>UniRef50_A0D6J1 Cluster: Chromosome undetermined scaffold_4, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_4,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 828
Score = 33.1 bits (72), Expect = 7.6
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 693 KTENLEQDLIVTFENIIIILNKQLFYFQNLYFSHL-DISIYKNDNEII 553
K EN Q LI + +I LNK + YFQ + F +L I I+ +DN+I+
Sbjct: 270 KAENFSQSLI--YSTVISQLNK-IVYFQAMVFKNLLKIYIFTSDNQIV 314
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,601,890
Number of Sequences: 1657284
Number of extensions: 13313137
Number of successful extensions: 35460
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35450
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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