Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30293.Seq
(762 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 134 2e-30
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 131 2e-29
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 128 1e-28
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 113 5e-24
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 102 1e-20
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 101 2e-20
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 98 2e-19
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 98 2e-19
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 94 3e-18
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 89 1e-16
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 78 2e-13
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 78 3e-13
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 65 2e-09
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 63 6e-09
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 54 5e-06
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 51 4e-05
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 44 0.003
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 41 0.038
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 37 0.63
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 37 0.63
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 36 0.83
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 36 1.1
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 33 5.8
UniRef50_A1WJR5 Cluster: Carbohydrate kinase, FGGY; n=1; Vermine... 33 5.8
UniRef50_A1SN07 Cluster: ATP-dependent helicase HrpA; n=4; Actin... 33 5.8
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 33 7.7
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 134 bits (325), Expect = 2e-30
Identities = 78/177 (44%), Positives = 101/177 (57%)
Frame = +1
Query: 52 MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
MKLN+S+PATG +++ + K ++ +G +
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 411
P + T+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLSVL LVIV+KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD 120
Query: 412 IPGLTDGNVPRRLGPQTCFQNP*AVQP*QRR*LRRYVVKTRASQAXEGKENAKPRHK 582
IPGLTD VPRRLGP+ + + +R+YVV+ + KE KPR K
Sbjct: 121 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLN-----KEGKKPRTK 172
Score = 112 bits (270), Expect = 8e-24
Identities = 75/170 (44%), Positives = 92/170 (54%), Gaps = 1/170 (0%)
Frame = +2
Query: 86 CQKLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGVRQTA 265
CQKL EV DE KLR FYE RM EV AD L +EWKG V+R++GGND QGFPMK GV
Sbjct: 12 CQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHG 71
Query: 266 VFVF*CQRATHVTDRAAMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*LMEM-YP 442
+ H R E + V + + S L L+ + K + L + P
Sbjct: 72 RVRLLLSKG-HSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVP 130
Query: 443 AV*VPKRASKIRKLFNLSKEDDYVVMSSKRVLPKPXKGKKMLNPXIRAPK 592
PKRAS+IRKLFNLSKEDD ++ L K +GKK P +APK
Sbjct: 131 RRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNK--EGKK---PRTKAPK 175
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 131 bits (317), Expect = 2e-29
Identities = 74/170 (43%), Positives = 97/170 (57%)
Frame = +1
Query: 52 MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
MKLN+SYP TG +++ + K + +G +
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 411
P + TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q+
Sbjct: 61 FPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQD 120
Query: 412 IPGLTDGNVPRRLGPQTCFQNP*AVQP*QRR*LRRYVVKTRASQAXEGKE 561
IPGLTD +PRRLGP+ + + +R+YV++ R EGK+
Sbjct: 121 IPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIR-RPLPEKEGKK 169
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 128 bits (309), Expect = 1e-28
Identities = 80/190 (42%), Positives = 103/190 (54%)
Frame = +1
Query: 52 MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
MKLNVS+PATG + + + K G + +G +
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 411
P + TN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS LAL++V+KG ++
Sbjct: 61 FPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKD 120
Query: 412 IPGLTDGNVPRRLGPQTCFQNP*AVQP*QRR*LRRYVVKTRASQAXEGKENAKPRHKGT* 591
IPGLTD V RRLGP+ + +R+YVVK + K+ KPR K
Sbjct: 121 IPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPE----KDGKKPRTKAP- 175
Query: 592 ESXG*LTPVV 621
+ +TPVV
Sbjct: 176 KIQRLITPVV 185
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 113 bits (272), Expect = 5e-24
Identities = 60/136 (44%), Positives = 76/136 (55%)
Frame = +1
Query: 52 MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
MK N+SYP TG + V + S K G+ ++ +G +
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 411
P RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA E
Sbjct: 61 FPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANE 120
Query: 412 IPGLTDGNVPRRLGPQ 459
I GLTD NVPRRLGP+
Sbjct: 121 IAGLTDQNVPRRLGPK 136
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 102 bits (244), Expect = 1e-20
Identities = 54/136 (39%), Positives = 75/136 (55%)
Frame = +1
Query: 52 MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
MK N+SYP TG + + + + + K G+ ++ +G +
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 411
P + RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++ VLAL IV+KG E
Sbjct: 61 FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAE 120
Query: 412 IPGLTDGNVPRRLGPQ 459
I GLT +PR+LGP+
Sbjct: 121 IDGLTTVTLPRKLGPK 136
Score = 80.6 bits (190), Expect = 4e-14
Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 1/159 (0%)
Frame = +2
Query: 89 QKLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGVR-QTA 265
QK E+ D+ K IF + +MG EV D L DE+KG V ++AGGND GFPMK GV +
Sbjct: 13 QKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDGFPMKQGVMVRGR 72
Query: 266 VFVF*CQRATHVTDRAAMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*LMEMYPA 445
V + + + T R + R+ ++ P R L + + + P
Sbjct: 73 VRLLLSEGHSCFTSRRSGFRKR-KSVRGCIVGPDMRVLALQIVKKGVAEIDGLTTVTLPR 131
Query: 446 V*VPKRASKIRKLFNLSKEDDYVVMSSKRVLPKPXKGKK 562
PKRA+ I+KLF L KEDD +++ K V+ + K K
Sbjct: 132 KLGPKRANNIKKLFGLKKEDDPILI-KKSVIRRTFKTAK 169
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 101 bits (242), Expect = 2e-20
Identities = 46/65 (70%), Positives = 54/65 (83%)
Frame = +1
Query: 265 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 444
RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA EI GLTD NVPR
Sbjct: 77 RVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANEIAGLTDQNVPR 136
Query: 445 RLGPQ 459
RLGP+
Sbjct: 137 RLGPK 141
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 97.9 bits (233), Expect = 2e-19
Identities = 44/56 (78%), Positives = 46/56 (82%)
Frame = +2
Query: 86 CQKLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGV 253
CQKLFEVVDEHKLR+FYE RMG V AD L DEWKG LR+AGGND QGFPMK GV
Sbjct: 12 CQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGV 67
Score = 57.6 bits (133), Expect = 3e-07
Identities = 39/116 (33%), Positives = 57/116 (49%)
Frame = +1
Query: 52 MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
MKLNVSYPATG ++ + K G+ + +G +
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 399
P + T+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 61 FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 115
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 97.9 bits (233), Expect = 2e-19
Identities = 54/136 (39%), Positives = 72/136 (52%)
Frame = +1
Query: 52 MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
MKLN+S P + + + + + K G S+ G +
Sbjct: 42 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQG 101
Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 411
P TN+RVRLL KG CYRPR+ GE++RKSVRGCIV +LS L L +V+KG E
Sbjct: 102 FPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKGTNE 161
Query: 412 IPGLTDGNVPRRLGPQ 459
IPGLTD V ++LGP+
Sbjct: 162 IPGLTDKAVGKKLGPK 177
Score = 68.9 bits (161), Expect = 1e-10
Identities = 55/166 (33%), Positives = 75/166 (45%), Gaps = 1/166 (0%)
Frame = +2
Query: 89 QKLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGVRQTAV 268
QK E+ DE KL F E R+G V D + +E+ G V R+ GGND QGFPM GV
Sbjct: 54 QKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQGFPMMQGVLTNNR 113
Query: 269 FVF*CQRATHVTDRAAMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*LMEMYPAV 448
++ R + E + V + S L L + + L +
Sbjct: 114 VRLLFKKGMKCY-RPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKGTNEIPGLTDKAVGK 172
Query: 449 *V-PKRASKIRKLFNLSKEDDYVVMSSKRVLPKPXKGKKMLNPXIR 583
+ PKRA+KIRKLFNL K DD R + K K + + P I+
Sbjct: 173 KLGPKRATKIRKLFNLDKTDDVRKYVIGRAISKNGK-NRFIKPKIQ 217
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 94.3 bits (224), Expect = 3e-18
Identities = 52/136 (38%), Positives = 73/136 (53%)
Frame = +1
Query: 52 MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
M++ ++YP G VV A + L K G+ + +G +
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 411
P + T R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L V+++KG +E
Sbjct: 61 FPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKE 120
Query: 412 IPGLTDGNVPRRLGPQ 459
I GLT VPRR GP+
Sbjct: 121 IDGLTTTAVPRRFGPK 136
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 89.0 bits (211), Expect = 1e-16
Identities = 51/135 (37%), Positives = 73/135 (54%)
Frame = +1
Query: 55 KLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXRI 234
K+NV+YPATG + L K G+ S+ +G +
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 235 PXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 414
P T TN+RVRLL+ + CY+P R+GER+RK+VRG IV ++SVL ++V+KG EI
Sbjct: 61 PMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEI 120
Query: 415 PGLTDGNVPRRLGPQ 459
G+T+ +P R GPQ
Sbjct: 121 EGVTNDALPMRAGPQ 135
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 78.2 bits (184), Expect = 2e-13
Identities = 36/67 (53%), Positives = 49/67 (73%)
Frame = +1
Query: 259 NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNV 438
+ R RLL+ +G CY RR+GERKRKS+RGCIV +L L++V+V G + +PGLTD V
Sbjct: 76 SQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTLPGLTDVVV 135
Query: 439 PRRLGPQ 459
P+RL P+
Sbjct: 136 PKRLVPK 142
Score = 52.0 bits (119), Expect = 2e-05
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Frame = +2
Query: 92 KLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGV-RQTAV 268
K + D K + + RM +E L +E+ G R+ GGND QGFPM GV +
Sbjct: 20 KSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGFPMYQGVLKSQRA 79
Query: 269 FVF*CQRATHVTDRAAMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*LME-MYPA 445
+ Q A R ER+ ++ P + L ++ K L L + + P
Sbjct: 80 RLLLRQGAKCYLHRRNGERKR-KSIRGCIVGPDLHA-LSVVLVDAGDKTLPGLTDVVVPK 137
Query: 446 V*VPKRASKIRKLFNL 493
VPKRASKIR+LF L
Sbjct: 138 RLVPKRASKIRRLFGL 153
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 77.8 bits (183), Expect = 3e-13
Identities = 34/56 (60%), Positives = 40/56 (71%)
Frame = +2
Query: 86 CQKLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGV 253
CQKL E DE K R FYE M +EV AD L +EWKG ++R++GGND QGFPMK V
Sbjct: 12 CQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQGFPMKQDV 67
Score = 39.9 bits (89), Expect = 0.067
Identities = 20/30 (66%), Positives = 22/30 (73%)
Frame = +2
Query: 455 PKRASKIRKLFNLSKEDDYVVMSSKRVLPK 544
PKRAS+IRKLFNLSKEDD S R + K
Sbjct: 96 PKRASRIRKLFNLSKEDDAAQNSILRKIRK 125
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 65.3 bits (152), Expect = 2e-09
Identities = 34/65 (52%), Positives = 43/65 (66%)
Frame = +1
Query: 235 PXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 414
P + T RVR L+SKG + YR RR G R+RKSVRG IV + VL L+I+R G +EI
Sbjct: 47 PMVSGHLTKKRVRPLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEI 106
Query: 415 PGLTD 429
GLT+
Sbjct: 107 DGLTN 111
Score = 45.6 bits (103), Expect = 0.001
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
Frame = +2
Query: 95 LFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGVRQTAVFV 274
+FE+ +++R+ Y+ ++G + L +E++G ++ + GG+D QGFPM G T V
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSG-HLTKKRV 58
Query: 275 F*CQRATHVTDRAAMERENVNQFVDVLLTPISRS--WLLLLCARVPRKFLD*LMEMYPAV 448
R R+ V + V + +S L L+ R K +D L V
Sbjct: 59 RPLLSKGDAGYRC--RRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDV 116
Query: 449 -*VPKRASKIRKLFNLSKEDDYVVMSSKRVLPKPXKGKKMLNPXIR 583
+P++ K+RK+F + E+ VV + +L K + P IR
Sbjct: 117 SHLPRKEKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKI-PKIR 161
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 63.3 bits (147), Expect = 6e-09
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 3/178 (1%)
Frame = +1
Query: 52 MKLNVSYPATGMPEVVRSGGRAQASYLLRKXH-GRRSRX*SVXR*MEGLXTSCRWRQRQX 228
MKLN++YP G + L+ G +G R +
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 229 RIPXETXRPTNSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLSVLALVIVRKG 402
P +SRV LL+ +G + R GER+RK+VRGC++ ++++++ + I + G
Sbjct: 61 GFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVG 120
Query: 403 AQEIPGLTDGNVPRRLGPQTCFQNP*AVQP*QRR*LRRYVVKTRASQAXEGKENAKPR 576
Q I G+TD PRRLGP+ + + +R+YVV+ R ++ + P+
Sbjct: 121 DQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRRVVKSGKKDRLKAPK 178
Score = 60.9 bits (141), Expect = 3e-08
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Frame = +2
Query: 92 KLFEVVDEHKLRI-FYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGVRQTAV 268
K FE+ DE R+ + R+G EV E+KG + R+ GG+D GFPM GV ++
Sbjct: 14 KQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSR 73
Query: 269 FVF*CQRAT--HVTDRAAM-ERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*LME-M 436
+R T R ER N VL + I + + + ++V + ++ + +
Sbjct: 74 VSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDI--ALVNVTISKVGDQPIEGVTDTT 131
Query: 437 YPAV*VPKRASKIRKLFNLSKEDDY--------VVMSSKRVLPKPXKGKKMLNPXIRA 586
P PKRASKIRKLFNLS+ +D VV S K+ K K ++++ P ++A
Sbjct: 132 APRRLGPKRASKIRKLFNLSRTEDVRKYVVRRRVVKSGKKDRLKAPKIQRLITPRVKA 189
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 53.6 bits (123), Expect = 5e-06
Identities = 24/35 (68%), Positives = 25/35 (71%)
Frame = +2
Query: 86 CQKLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWK 190
CQKL EV DE KLR FYE RM EV AD L +EWK
Sbjct: 12 CQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 50.8 bits (116), Expect = 4e-05
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 89 QKLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGV 253
Q E+ DE KLRI Y ++ +++ + EW + + GG D QGFPMK G+
Sbjct: 13 QHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQGFPMKEGI 67
Score = 44.4 bits (100), Expect = 0.003
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Frame = +1
Query: 52 MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
MK N++ P+TG+ + + L K + + + + Q +
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 232 IPXETXRPTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIV 393
P + + SRV++L+ KG + R + GER RKSVRGCIV +SVL + ++
Sbjct: 61 FPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNIKLL 116
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +1
Query: 265 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 399
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 62
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 40.7 bits (91), Expect = 0.038
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1
Query: 235 PXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 402
P P +R RLL+S G +RP+ G RKRK VRG ++ ++ + V+V+ G
Sbjct: 62 PMRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 36.7 bits (81), Expect = 0.63
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 265 RVRLLMSKGHS-CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVP 441
RV LL++ HS Y+P R E S++ V +S+L +VI+ G ++IPG T P
Sbjct: 61 RVHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRKDIPGQTKRWAP 119
Query: 442 RR 447
+R
Sbjct: 120 KR 121
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 36.7 bits (81), Expect = 0.63
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +1
Query: 265 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 393
RV++L+S+G +RPR GER++K+V G + N+ + + IV
Sbjct: 83 RVKILLSRGPG-FRPRERGERRKKTVHGNTISPNIVQVNMKIV 124
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 36.3 bits (80), Expect = 0.83
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +1
Query: 265 RVRLLMSKGHSCYRPRRDGERKRKSVRG 348
RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 83 RVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 35.9 bits (79), Expect = 1.1
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +1
Query: 184 MEGLXTSCRWRQRQXRIPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 357
M GL R IP P + R ++L++ G + PR GER+RKSVRG ++
Sbjct: 153 MPGLKFKIRGGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGERRRKSVRGRMI 209
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 33.5 bits (73), Expect = 5.8
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +1
Query: 184 MEGLXTSCRWRQRQXRIPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDA 363
++GL R + P P + R L+S G + PR GER+RK+VRG +
Sbjct: 166 LKGLQLEIRGGSDESGFPMRPDIPGPVKKRALLS-GPPGFWPREKGERRRKTVRGNTISE 224
Query: 364 NLSVLALVIVRK 399
++ + IV++
Sbjct: 225 DIVQINTKIVKQ 236
>UniRef50_A1WJR5 Cluster: Carbohydrate kinase, FGGY; n=1;
Verminephrobacter eiseniae EF01-2|Rep: Carbohydrate
kinase, FGGY - Verminephrobacter eiseniae (strain
EF01-2)
Length = 493
Score = 33.5 bits (73), Expect = 5.8
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -2
Query: 485 TAYGFWKHVWGPRRRGTFPSVNPGISWAPLRTITRAKTERL 363
+A G H+W P R GTF S+ WAPL R ERL
Sbjct: 172 SALGCHSHLWNPHR-GTFSSLAVARGWAPLFAPLRWAHERL 211
>UniRef50_A1SN07 Cluster: ATP-dependent helicase HrpA; n=4;
Actinomycetales|Rep: ATP-dependent helicase HrpA -
Nocardioides sp. (strain BAA-499 / JS614)
Length = 1282
Score = 33.5 bits (73), Expect = 5.8
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 104 VVDEHKLRIFYEXRMGAEVXADQLXDEW 187
VVDEH L FY+ R+GA+V + D+W
Sbjct: 774 VVDEHTLFDFYDARVGADVVSGAHFDQW 801
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 33.1 bits (72), Expect = 7.7
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 188 KGXVLRVAGGNDXQGFPMKXGVRQTAVF 271
KG LR+ GG+D GFPMK V T F
Sbjct: 43 KGYKLRITGGSDKNGFPMKEDVDGTRRF 70
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,879,566
Number of Sequences: 1657284
Number of extensions: 13036893
Number of successful extensions: 30920
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 30011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30899
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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