Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30206.Seq
         (533 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ACM1 Cluster: ABC-type transporter, permease protein;...    33   3.1  
UniRef50_Q2UI08 Cluster: Predicted protein; n=1; Aspergillus ory...    33   5.4  
UniRef50_UPI0000498AE3 Cluster: Rab GTPase activating protein; n...    32   7.2  

>UniRef50_Q6ACM1 Cluster: ABC-type transporter, permease protein;
           n=1; Leifsonia xyli subsp. xyli|Rep: ABC-type
           transporter, permease protein - Leifsonia xyli subsp.
           xyli
          Length = 202

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -2

Query: 463 GVIVVECFDRTGRGRGRRHPARTPRLSTGTG 371
           G  V +  DRTG GRG + P   PR   GTG
Sbjct: 161 GRAVAKALDRTGAGRGLQGPVARPRRERGTG 191


>UniRef50_Q2UI08 Cluster: Predicted protein; n=1; Aspergillus
           oryzae|Rep: Predicted protein - Aspergillus oryzae
          Length = 699

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 359 NVNKTGAGREPRCPRGMTAATSSTGSIETFHHYNSSKTKETTLIFRKPTKERIPS 523
           + N+ G     + PRG+  +TS+T +I       S+K +  + + +  T ER+PS
Sbjct: 375 HANRHGLSEADKDPRGIFISTSTTKAIGNISVSQSAKFRSISTVNKGNTSERLPS 429


>UniRef50_UPI0000498AE3 Cluster: Rab GTPase activating protein; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: Rab GTPase
           activating protein - Entamoeba histolytica HM-1:IMSS
          Length = 604

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 11/39 (28%), Positives = 26/39 (66%)
 Frame = -3

Query: 201 PLNFINLVLLQLNIMVGKLLTHSFTSYLMKVLISSINYY 85
           P+ F+N  +  LNI++ K +T++F SY   + +++++ +
Sbjct: 136 PIQFVNKEVGLLNILINKTMTNNFDSYKYSICLTNLSSF 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,490,474
Number of Sequences: 1657284
Number of extensions: 8666159
Number of successful extensions: 25407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25374
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)