Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0005
         (454 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8WZ42 Cluster: Titin; n=65; Eukaryota|Rep: Titin - Hom...    34   1.6  
UniRef50_A0DHR3 Cluster: Chromosome undetermined scaffold_50, wh...    32   5.0  
UniRef50_Q6VZV2 Cluster: CNPV045 G protein-coupled receptor-like...    31   8.7  
UniRef50_Q4TT96 Cluster: Serpentine receptor, class h protein 76...    31   8.7  

>UniRef50_Q8WZ42 Cluster: Titin; n=65; Eukaryota|Rep: Titin - Homo
             sapiens (Human)
          Length = 34350

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 420   KISIRYKIKLVKLXXK*LKKNQFGSFKCKIYHSFFNDQKFGSIFVLNVHNVY 265
             K  I Y+  +  L  K + K   G+++CK+ + +  D  +  +FV  V  VY
Sbjct: 32541 KYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVREVY 32592


>UniRef50_A0DHR3 Cluster: Chromosome undetermined scaffold_50, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_50,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 142

 Score = 32.3 bits (70), Expect = 5.0
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +1

Query: 262 LINIMYIQNENAAKFLVIEETVIDFTFKRSKLVFF*LFXX*FYEFYFIPY 411
           ++NI+  QN +++ F      VI+F F  S   FF  +   F  FYFIPY
Sbjct: 26  IVNILKRQNRHSSNFSSPILFVINFAFSPSLSPFFHYY---FITFYFIPY 72


>UniRef50_Q6VZV2 Cluster: CNPV045 G protein-coupled receptor-like
           protein; n=1; Canarypox virus|Rep: CNPV045 G
           protein-coupled receptor-like protein - Canarypox virus
           (CNPV)
          Length = 332

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 354 FGSFKCKIYHSFFNDQKFGSIFVLNVHNVY 265
           FG   CKI   FF    F SIF++ V +VY
Sbjct: 86  FGKALCKISSFFFTSNMFASIFLITVISVY 115


>UniRef50_Q4TT96 Cluster: Serpentine receptor, class h protein 76,
           isoform b; n=2; Caenorhabditis elegans|Rep: Serpentine
           receptor, class h protein 76, isoform b - Caenorhabditis
           elegans
          Length = 349

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 348 SFKCKIYHSFFNDQKFGSIFVLNVHNVY*ELVYIGVLSVHCQYW 217
           S+ C   +S + +Q   + FVL V N Y  +  IG++S H  YW
Sbjct: 279 SYCCYSVYSNYYNQMLNNFFVL-VFNFYGTVSTIGLISCHTAYW 321


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 381,254,065
Number of Sequences: 1657284
Number of extensions: 6387302
Number of successful extensions: 12268
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12266
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)