Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0057
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1YKE3 Cluster: CCR4 associated factor-like protein; n=...    36   1.2  
UniRef50_Q8A1Z2 Cluster: Arabinan endo-1,5-alpha-L-arabinosidase...    34   3.7  
UniRef50_UPI00006DB8FC Cluster: hypothetical protein BdolA_01003...    33   6.4  
UniRef50_Q84170 Cluster: Vaccinia virus gene F11L homolog; n=4; ...    33   6.4  
UniRef50_Q3JEB2 Cluster: Mutator MutT; n=1; Nitrosococcus oceani...    33   6.4  
UniRef50_Q3BY16 Cluster: Putative secreted protein precursor; n=...    33   6.4  
UniRef50_A7NSX5 Cluster: Chromosome chr18 scaffold_1, whole geno...    33   6.4  
UniRef50_Q25A03 Cluster: H0821G03.13 protein; n=4; Oryza sativa|...    33   8.4  
UniRef50_Q6NRZ1 Cluster: Uncharacterized protein KIAA0701 homolo...    33   8.4  

>UniRef50_A1YKE3 Cluster: CCR4 associated factor-like protein; n=1;
           Brachypodium sylvaticum|Rep: CCR4 associated factor-like
           protein - Brachypodium sylvaticum (False brome)
          Length = 291

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +3

Query: 267 TQMLPSQS--GDPTR*TRLVSVAAPTSG--CCSITRSRGPRSQGGNVHSGTSVSEGWTRR 434
           T  LP ++  G PTR TR  S A PTS   CCS          G    SG+S S   TR 
Sbjct: 131 TTTLPRRTTCGPPTRATRS-SAATPTSSATCCSWAWHSWAPGAGPTPSSGSSTSAASTRP 189

Query: 435 VSPGRARPPTALIQGPSCW 491
            +    RPP+   + P+ W
Sbjct: 190 AATRTRRPPSPCSR-PTGW 207


>UniRef50_Q8A1Z2 Cluster: Arabinan endo-1,5-alpha-L-arabinosidase A;
           n=10; Bacteroidetes|Rep: Arabinan
           endo-1,5-alpha-L-arabinosidase A - Bacteroides
           thetaiotaomicron
          Length = 637

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 393 HYLPVSVDLCCE*CCSTRTSVLPRSPAAFSVLGHQTGRATSESH 262
           +YL  S+  CCE   ST T+V+ RS   F     + GR+ S++H
Sbjct: 520 YYLFASIGRCCEGLKSTYTTVVGRSKNLFGPYVDKKGRSMSDNH 563


>UniRef50_UPI00006DB8FC Cluster: hypothetical protein
           BdolA_01003360; n=1; Burkholderia dolosa AUO158|Rep:
           hypothetical protein BdolA_01003360 - Burkholderia
           dolosa AUO158
          Length = 153

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
 Frame = +3

Query: 222 RRWRDSQLRIQTTGGTQMLPSQSGDPTR*TRLVSVAAPTSGCCSITRSRGPRSQGGNVHS 401
           R +R + +R   +G T M PS  G+PTR   + S  +P++   +     G RS      +
Sbjct: 12  RPFRSATVRTGESGCTTM-PSDVGEPTRVATIRSAGSPSAAVSTGKSPAGARSIAPARCA 70

Query: 402 GTSVSEGW-----TRRVSPGRARPPTALIQGPSCWVVITQIYCD 518
             S +  W      R  +P   R  +A  + P  W   T +  D
Sbjct: 71  SNSGAAPWKFAQRNRYGAPSSTRAASASARSPPAWSPSTSVTPD 114


>UniRef50_Q84170 Cluster: Vaccinia virus gene F11L homolog; n=4;
           Parapoxvirus|Rep: Vaccinia virus gene F11L homolog - Orf
           virus
          Length = 442

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 333 PTSGCCSITRSRGPRSQGGNVHS--GTSVSEGWTRRVSPGRARPPTALIQGPSCWVVITQ 506
           PT+GC  + R R     GG+     G   ++     V+P  ARP    + G +C V++  
Sbjct: 20  PTAGCMPLRRPRDGADGGGDSDDDYGYGDTDSVASSVAPVEARPLVLTVPGTNCPVLVDS 79

Query: 507 IY 512
           ++
Sbjct: 80  VF 81


>UniRef50_Q3JEB2 Cluster: Mutator MutT; n=1; Nitrosococcus oceani
           ATCC 19707|Rep: Mutator MutT - Nitrosococcus oceani
           (strain ATCC 19707 / NCIMB 11848)
          Length = 321

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -2

Query: 460 GGRARPGETRRVHPSDTLVPECTLPPCERGPLLRVMLQHPDVGAATLTSRVQRV-GSPDW 284
           GG+ +PGE  R   S  L  E  +   +  PLL+V   +PD        RV R  G+P  
Sbjct: 36  GGKLKPGEEVRQALSRELWEELGIQVLQARPLLQVHHDYPDRSVLLHVWRVDRFSGTPKG 95

Query: 283 EGNI*VPPVVWI 248
           +      PVVW+
Sbjct: 96  QEG---QPVVWV 104


>UniRef50_Q3BY16 Cluster: Putative secreted protein precursor; n=1;
           Xanthomonas campestris pv. vesicatoria str. 85-10|Rep:
           Putative secreted protein precursor - Xanthomonas
           campestris pv. vesicatoria (strain 85-10)
          Length = 162

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 113 STCSTFGLREDRLQLSRGPATRPPRH-SEVRLQDSLMTTLARQSAPYPNDWWDSDVA 280
           S C TF  RED+ +L +G   R  ++ S  R   +L   +A +  PY  D  D + A
Sbjct: 105 SACPTFSEREDQFKLEKGQLIRYEKYGSSYRRTVALYPDIAGKDVPYDKDCSDPEDA 161


>UniRef50_A7NSX5 Cluster: Chromosome chr18 scaffold_1, whole genome
            shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
            chr18 scaffold_1, whole genome shotgun sequence - Vitis
            vinifera (Grape)
          Length = 1193

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
 Frame = +1

Query: 253  KRLVGLRCCPPSLVTQHAERGW*AWQHRR---PGXXXXXXXEVHAHREVMCTQALVCRRG 423
            K++V +    P  V  H + G   W++ R   PG          AHR V+ +  +   R 
Sbjct: 939  KKIVSVGDLKPEPVLWHEDNGRRPWENGRQNLPGTISGRQLGEAAHRLVVNSLQVKAERN 998

Query: 424  GLGASLLVEPALPLHSYRGPPV 489
            G G  +   P  P   Y GPP+
Sbjct: 999  GFGDQMHAPPPYPAAPY-GPPL 1019


>UniRef50_Q25A03 Cluster: H0821G03.13 protein; n=4; Oryza
           sativa|Rep: H0821G03.13 protein - Oryza sativa (Rice)
          Length = 495

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +3

Query: 252 QTTGGTQMLPSQSGDPTR*TRLVSVAAPTS--GCCSITRSRGPRSQ--GGNVHSGTSVSE 419
           +T+G +  L  +SGDP   T   SV AP    G  S + +R P+     G +H   S S 
Sbjct: 27  ETSGTSHPLSPRSGDPLPITTSASVTAPLELPGATSASPARNPKINYTRGILHLYRSSSS 86

Query: 420 GWTRRVSPGRARPPTALIQGPS 485
             T   +   A  P++   GP+
Sbjct: 87  SSTASYASAVAATPSSSSSGPA 108


>UniRef50_Q6NRZ1 Cluster: Uncharacterized protein KIAA0701 homolog;
           n=3; Euteleostomi|Rep: Uncharacterized protein KIAA0701
           homolog - Xenopus laevis (African clawed frog)
          Length = 1415

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +3

Query: 489 WVVITQIYCDYTMLFFPKEVILEQKFSANFIRILRDLKTTQPHRSHELRGPQPLVTS 659
           W+ I +++C+   +  P   +     S +  +++ ++ T +  RS    GP PLVT+
Sbjct: 55  WLAINKVFCNKAAIRIPWTKLKTHPISLSLDKVIMEMSTCEEPRS--CNGPSPLVTA 109


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 701,281,727
Number of Sequences: 1657284
Number of extensions: 14927719
Number of successful extensions: 45176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 42961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45161
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)