Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30086
         (500 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O96383 Cluster: Immune-related Hdd13; n=1; Hyphantria c...   237   1e-61
UniRef50_UPI000023D6AE Cluster: hypothetical protein FG04299.1; ...    37   0.22 
UniRef50_Q4S220 Cluster: Chromosome undetermined SCAF14764, whol...    33   4.8  
UniRef50_A4AIN3 Cluster: Glycerol operon regulatory protein; n=3...    33   4.8  
UniRef50_A1WUK0 Cluster: Phosphoglycolate phosphatase; n=2; Ecto...    33   4.8  
UniRef50_P20999 Cluster: Protein B2; n=37; Orthopoxvirus|Rep: Pr...    33   4.8  
UniRef50_Q2QMC6 Cluster: Putative uncharacterized protein; n=2; ...    32   6.3  
UniRef50_UPI0000E81402 Cluster: PREDICTED: similar to matrilin-4...    32   8.3  

>UniRef50_O96383 Cluster: Immune-related Hdd13; n=1; Hyphantria
           cunea|Rep: Immune-related Hdd13 - Hyphantria cunea (Fall
           webworm)
          Length = 266

 Score =  237 bits (580), Expect = 1e-61
 Identities = 109/149 (73%), Positives = 125/149 (83%)
 Frame = +3

Query: 54  MSKRTVLNENYKGIVESMSIPAEIHERNGKKYASVGSILPIHCCPPEELERRAESTHHYC 233
           MSKRT LNENYKG+VE +SIPAE+HER+GKKYAS GS +PIH C  EE++R A  THHYC
Sbjct: 26  MSKRTALNENYKGLVEELSIPAELHERDGKKYASFGSTIPIHSCSAEEIKRYANKTHHYC 85

Query: 234 GVFTDELLAPLEELAYVRLDENTAEKVFINRAKRILIVSSDGHLAXWRCAPTFESANRXI 413
            VFT+++LAPL EL YVRLDENTAEKVFINR KRIL+VSSDG LA WRCAPTFES N  I
Sbjct: 86  DVFTEQVLAPLGELVYVRLDENTAEKVFINRNKRILLVSSDGELAQWRCAPTFESPNSYI 145

Query: 414 AGTPIVDQRGGVISVVXAKKNNHYAVSSF 500
           AG PIV++ G ++SVV AKK NHYAVS+F
Sbjct: 146 AGAPIVNKDGELVSVVTAKKGNHYAVSTF 174


>UniRef50_UPI000023D6AE Cluster: hypothetical protein FG04299.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG04299.1 - Gibberella zeae PH-1
          Length = 899

 Score = 37.1 bits (82), Expect = 0.22
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +1

Query: 133 ETARSTRAWGPYCRYTAARPKSWSDALRARTTTAACSP 246
           +TARSTRA G      A RP S +D+ R+ +T   CSP
Sbjct: 737 DTARSTRARGKSVSNVAGRPTSMADSTRSSSTINLCSP 774


>UniRef50_Q4S220 Cluster: Chromosome undetermined SCAF14764, whole
            genome shotgun sequence; n=4; cellular organisms|Rep:
            Chromosome undetermined SCAF14764, whole genome shotgun
            sequence - Tetraodon nigroviridis (Green puffer)
          Length = 2515

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 145  STRAWGPYCRYTAARPKSWSDALRARTTTAACSPTNCWRRSRNWPT 282
            STR+W       + RP SW    R  T+   C   +CWR S   P+
Sbjct: 1692 STRSWRWTASSPSTRPTSWGWRRRRATSCTTC--CSCWRSSTTGPS 1735


>UniRef50_A4AIN3 Cluster: Glycerol operon regulatory protein; n=3;
           Actinobacteria (class)|Rep: Glycerol operon regulatory
           protein - marine actinobacterium PHSC20C1
          Length = 257

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 54  MSKRTVLNENYKGIVESMSIPAEIHERNGKKYASVGSILPIHCCPPEE 197
           +++R +  E  + ++   SI A I +RNG   A+V  ++P    PPE+
Sbjct: 177 IAERGIATEEDEAVLGESSIAAPIADRNGSVIAAVAVVMPSSEWPPED 224


>UniRef50_A1WUK0 Cluster: Phosphoglycolate phosphatase; n=2;
           Ectothiorhodospiraceae|Rep: Phosphoglycolate phosphatase
           - Halorhodospira halophila (strain DSM 244 / SL1)
           (Ectothiorhodospirahalophila (strain DSM 244 / SL1))
          Length = 230

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +1

Query: 148 TRAWGPYCRYTAARPKSWSDALRARTTTAACSPTNCW 258
           TRA    C  T AR K   D +R    T  C P  CW
Sbjct: 129 TRAGAVVCGDTLARAKPHPDPIRHAAATLGCPPEACW 165


>UniRef50_P20999 Cluster: Protein B2; n=37; Orthopoxvirus|Rep:
           Protein B2 - Vaccinia virus (strain Copenhagen) (VACV)
          Length = 219

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 384 PTFESANRXIAGTPIVDQRGGVISVVXAKKNNHYAVS 494
           P FE       G PI DQ G  IS++  +  N+YA+S
Sbjct: 67  PMFECNEYLQIGDPIHDQEGNQISIITYRHKNYYALS 103


>UniRef50_Q2QMC6 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 351

 Score = 32.3 bits (70), Expect = 6.3
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +1

Query: 130 RETARSTRAWGPYCRYTAARPKSWSDALRARTTTAACSPTNCWRRSRNWPTLDSTRILLR 309
           R  A   R  GP     A   +SW+ +       A  SP  C+RR + W +L S+    R
Sbjct: 237 RPHANVRRTNGPRSSPAAMAMESWARSASDAAADAGASP-GCFRRIKIWSSLSSSSSCSR 295

Query: 310 RSS 318
           RS+
Sbjct: 296 RSA 298


>UniRef50_UPI0000E81402 Cluster: PREDICTED: similar to matrilin-4;
           n=1; Gallus gallus|Rep: PREDICTED: similar to matrilin-4
           - Gallus gallus
          Length = 564

 Score = 31.9 bits (69), Expect = 8.3
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 135 NGKKYASVGSILPIHCCPPEELERRAES-THHYCGVFTDELLAPLEELAYVRLDENTAEK 311
           +G ++  V S    HC  PE  + +A+  T   CG    +L+  ++    VR       K
Sbjct: 306 HGCEFKCVSSEGSFHCVCPEGQQLQADGKTCSKCGAGHVDLVMVIDGSKSVRPQNFELVK 365

Query: 312 VFINRAKRILIVSSDG 359
            F+NR   +L VS DG
Sbjct: 366 QFVNRIVDLLEVSPDG 381


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,178,053
Number of Sequences: 1657284
Number of extensions: 7663902
Number of successful extensions: 24627
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24623
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)