Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30119
         (363 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3W3M7 Cluster: Similar to Phosphoribosylamine-glycine ...    35   0.39 
UniRef50_A0L6C2 Cluster: Putative uncharacterized protein; n=1; ...    35   0.51 
UniRef50_UPI00003ACDA3 Cluster: UPI00003ACDA3 related cluster; n...    31   4.8  
UniRef50_Q8N5S0 Cluster: Hypothetical gene supported by BC031673...    31   6.3  

>UniRef50_Q3W3M7 Cluster: Similar to Phosphoribosylamine-glycine
           ligase; n=1; Frankia sp. EAN1pec|Rep: Similar to
           Phosphoribosylamine-glycine ligase - Frankia sp. EAN1pec
          Length = 552

 Score = 35.1 bits (77), Expect = 0.39
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +2

Query: 134 PSCCTRCSSCFWSTPCSRRMVCAGTR*VEHNCXXTSRRHRTPSWGGSAQDW 286
           PS CTR +S  W TP + R  C        +    SR  RT S  GS  +W
Sbjct: 4   PSRCTRSTSSRWPTPSTPRSRCRWRSGTAGSPRPPSRSARTTSGDGSTTNW 54


>UniRef50_A0L6C2 Cluster: Putative uncharacterized protein; n=1;
           Magnetococcus sp. MC-1|Rep: Putative uncharacterized
           protein - Magnetococcus sp. (strain MC-1)
          Length = 523

 Score = 34.7 bits (76), Expect = 0.51
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = -1

Query: 219 STHLVPAQTILLEQGVLQKQELQRVQQEGRYLQPMKPLAPVF 94
           S+H V     L+E G+ Q + L+RV Q GR++Q + PLA  F
Sbjct: 431 SSHEVALDLSLMEYGIYQ-EALERVLQSGRFVQQVAPLAERF 471


>UniRef50_UPI00003ACDA3 Cluster: UPI00003ACDA3 related cluster; n=1;
           Gallus gallus|Rep: UPI00003ACDA3 UniRef100 entry -
           Gallus gallus
          Length = 89

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 131 RPSCCTRCSSCFWSTPC 181
           +P CCT  ++C W TPC
Sbjct: 60  QPLCCTEAATCSWITPC 76


>UniRef50_Q8N5S0 Cluster: Hypothetical gene supported by BC031673;
           n=3; Catarrhini|Rep: Hypothetical gene supported by
           BC031673 - Homo sapiens (Human)
          Length = 271

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 22/59 (37%), Positives = 25/59 (42%)
 Frame = +2

Query: 95  NTGASGFMG*RYRPSCCTRCSSCFWSTPCSRRMVCAGTR*VEHNCXXTSRRHRTPSWGG 271
           N GA G  G R R S CT       S  CSRR   AGT   + +    + R   PS  G
Sbjct: 195 NNGAPG-RGRRRRLSPCTPLEIRLGSRSCSRRGAAAGTDTTQAHTAPPAARRPAPSGAG 252


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,726,234
Number of Sequences: 1657284
Number of extensions: 3504073
Number of successful extensions: 9374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9349
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12794443530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)