Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30112
(527 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137; Eukar... 139 3e-32
UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58; Eukary... 131 1e-29
UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal ... 100 4e-20
UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e cont... 94 2e-18
UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza ... 85 1e-15
UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p... 82 7e-15
UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia... 76 6e-13
UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, wh... 75 1e-12
UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1; Encepha... 70 3e-11
UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative; ... 67 2e-10
UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4; Euryar... 67 3e-10
UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4; Thermo... 65 8e-10
UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11; Archa... 61 1e-08
UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10; Archa... 60 4e-08
UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9; Euryar... 59 7e-08
UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5; Haloba... 58 2e-07
UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiell... 56 4e-07
UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 55 1e-06
UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 54 2e-06
UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4; Methan... 54 3e-06
UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1; uncul... 51 2e-05
UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory ... 49 6e-05
UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14; Bacter... 49 6e-05
UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole geno... 49 8e-05
UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1; Nanoar... 47 3e-04
UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n... 44 0.002
UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1; ... 36 0.58
UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia... 36 0.76
UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4; Endopterygota|... 36 0.76
UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=... 36 0.76
UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycopla... 36 0.76
UniRef50_UPI00004999F3 Cluster: hypothetical protein 23.t00039; ... 35 1.3
UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5; Eurotio... 35 1.3
UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7; Pezizom... 35 1.3
UniRef50_Q849N3 Cluster: Putative uncharacterized protein pSV2.0... 34 1.8
UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1; Oltmannsiel... 34 1.8
UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1; ... 34 1.8
UniRef50_UPI00015B5897 Cluster: PREDICTED: similar to lin-9 homo... 34 2.3
UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis... 34 2.3
UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit... 34 2.3
UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellul... 34 2.3
UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium lot... 33 3.1
UniRef50_A5FGA8 Cluster: DNA-(Apurinic or apyrimidinic site) lya... 33 3.1
UniRef50_Q9TCB7 Cluster: Ribosomal protein S13; n=1; Nephroselmi... 33 3.1
UniRef50_Q7PDN3 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=... 33 4.1
UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomona... 33 4.1
UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of str... 33 4.1
UniRef50_A1L3M1 Cluster: LOC100037042 protein; n=1; Xenopus laev... 33 5.4
UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma ... 33 5.4
UniRef50_Q4A8Y3 Cluster: Glutamyl-tRNA amidotransferase subunit ... 32 7.1
UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellu... 32 7.1
UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast ... 32 7.1
UniRef50_Q47VK1 Cluster: LPS-assembly protein precursor; n=1; Co... 32 7.1
UniRef50_UPI00006CB1B8 Cluster: insulysin, putative; n=1; Tetrah... 32 9.4
UniRef50_A3IUX9 Cluster: Putative uncharacterized protein; n=1; ... 32 9.4
UniRef50_Q7RQE1 Cluster: Protein factor associated with neutral-... 32 9.4
UniRef50_P15758 Cluster: Mitochondrial ribosomal protein S13; n=... 32 9.4
>UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137;
Eukaryota|Rep: 40S ribosomal protein S18 - Drosophila
melanogaster (Fruit fly)
Length = 152
Score = 139 bits (337), Expect = 3e-32
Identities = 65/74 (87%), Positives = 71/74 (95%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSLVIP+KFQHILRIMNTNIDGKRKV AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 208 EEEVEKIITIMSNP 249
EEEV+K++TI+SNP
Sbjct: 61 EEEVDKVVTIISNP 74
Score = 123 bits (296), Expect = 3e-27
Identities = 52/59 (88%), Positives = 58/59 (98%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
YK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+HRG+RHYWGLRVRGQH
Sbjct: 77 YKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQH 135
>UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58;
Eukaryota|Rep: 40S ribosomal protein S18 - Homo sapiens
(Human)
Length = 152
Score = 131 bits (316), Expect = 1e-29
Identities = 58/78 (74%), Positives = 72/78 (92%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 208 EEEVEKIITIMSNPRHIR 261
E+EVE++ITIM NPR +
Sbjct: 61 EDEVERVITIMQNPRQYK 78
Score = 117 bits (281), Expect = 2e-25
Identities = 49/59 (83%), Positives = 56/59 (94%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
YKIPDWFLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAHRG+RH+WGLRVRGQH
Sbjct: 77 YKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal
protein S18; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S18 - Rattus norvegicus
Length = 170
Score = 99.5 bits (237), Expect = 4e-20
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSLVI +K QHIL+++NTNID +++ FA+TA KG +RY+++VL+KA IDL K AGE T
Sbjct: 1 MSLVISEKSQHILQVLNTNIDEQQETAFAITATKGAEQRYAHVVLRKAGIDLTKMAGELT 60
Query: 208 EEEVEKIITIMSNPR 252
E++VE++ITIM NPR
Sbjct: 61 EDKVERVITIMQNPR 75
Score = 72.1 bits (169), Expect = 7e-12
Identities = 31/48 (64%), Positives = 40/48 (83%)
Frame = +3
Query: 285 QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
QK + DG+ SQ+ ++ LD+KLRE+LERLKKIRAHRG+RH+WGL V Q
Sbjct: 81 QKGVRDGRCSQVPANGLDNKLREELERLKKIRAHRGLRHFWGLHVHCQ 128
>UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ribosomal protein S13p/S18e containing
protein - Tetrahymena thermophila SB210
Length = 155
Score = 93.9 bits (223), Expect = 2e-18
Identities = 39/60 (65%), Positives = 49/60 (81%)
Frame = +3
Query: 252 AYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
A+ IP W LNR D DGK Q+ S+ LD+K+REDLERLKKI++HRG+RH+WGL+VRGQH
Sbjct: 78 AHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIKSHRGLRHFWGLKVRGQH 137
Score = 69.7 bits (163), Expect = 4e-11
Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
Frame = +1
Query: 28 MSLVIPDK--FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 201
MS VI + F++I RI+NTNIDGKR A+T I+G+GRR++ I+ K ID + RAG
Sbjct: 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGL 60
Query: 202 CTEEEVEKIITIMSNP 249
TE++ KI ++++P
Sbjct: 61 LTEDQCNKITDLIADP 76
>UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza
sativa (japonica cultivar-group)|Rep: Ribosomal protein
S18-like - Oryza sativa subsp. japonica (Rice)
Length = 145
Score = 85.0 bits (201), Expect = 1e-15
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = +3
Query: 282 RQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
++KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 79 QKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 128
>UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p -
Drosophila melanogaster (Fruit fly)
Length = 246
Score = 82.2 bits (194), Expect = 7e-15
Identities = 36/42 (85%), Positives = 41/42 (97%)
Frame = +1
Query: 124 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNP 249
IKGVGRRYSNIVLKKAD+DL KRAGECTEEEV+K++TI+SNP
Sbjct: 1 IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNP 42
>UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_8004_7540 - Giardia lamblia ATCC
50803
Length = 154
Score = 75.8 bits (178), Expect = 6e-13
Identities = 32/73 (43%), Positives = 53/73 (72%)
Frame = +1
Query: 31 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 210
++V P+ ++ +LR+ NTNI GK + A+ IKG+GRR++N+ LKKA+ID+ KRAGE T
Sbjct: 3 TIVQPNDYRDLLRMFNTNIQGKVVLECALVGIKGIGRRFANVALKKANIDVHKRAGELTA 62
Query: 211 EEVEKIITIMSNP 249
E + ++ ++ +P
Sbjct: 63 AEEDALMKVLEDP 75
Score = 62.5 bits (145), Expect = 6e-09
Identities = 28/60 (46%), Positives = 37/60 (61%)
Frame = +3
Query: 252 AYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
++ IP W LNR D GK + + + S R DLERL+K R RG+RH+ L+VRGQH
Sbjct: 77 SHGIPAWMLNRNNDFESGKDMHILVNTIASTHRADLERLRKTRCERGVRHHHNLKVRGQH 136
>UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_89,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 193
Score = 74.9 bits (176), Expect = 1e-12
Identities = 36/81 (44%), Positives = 59/81 (72%), Gaps = 3/81 (3%)
Frame = +1
Query: 28 MSLVIP--DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 201
MSLV+ D+F+ I+RI+NTN+DGK+++ + + +IKG+GRR++ + K ++L KRAGE
Sbjct: 1 MSLVLEKADQFRQIIRILNTNVDGKQQMAYEIRSIKGIGRRFAIQICKVLRLNLTKRAGE 60
Query: 202 CTEEEVEKIITIMSN-PRHIR 261
T+EE KI ++ P++IR
Sbjct: 61 LTDEEAHKITEVIKMVPQYIR 81
Score = 50.8 bits (116), Expect = 2e-05
Identities = 22/45 (48%), Positives = 36/45 (80%), Gaps = 2/45 (4%)
Frame = +3
Query: 288 KDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRG--MRHYWGLR 416
+D+ +GK ++T++ L++KLREDLER+KKI+ + +RH+WGLR
Sbjct: 81 RDLKNGKNYEVTTNELETKLREDLERIKKIKYSQWLCLRHHWGLR 125
>UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S18
- Encephalitozoon cuniculi
Length = 153
Score = 70.1 bits (164), Expect = 3e-11
Identities = 31/72 (43%), Positives = 50/72 (69%)
Frame = +1
Query: 43 PDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 222
P + Q+I+RI NTNIDG +++ FA+T I+G+G R + + K+ IDL KRAGE E+E++
Sbjct: 7 PAEVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMK 66
Query: 223 KIITIMSNPRHI 258
+I + +P +
Sbjct: 67 RISDAILDPASV 78
Score = 51.2 bits (117), Expect = 1e-05
Identities = 26/56 (46%), Positives = 36/56 (64%)
Frame = +3
Query: 261 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
IP+ ++N Q+DI+DG S L + LD+ LR +ER KK + R R GL+VRGQ
Sbjct: 80 IPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDVGLKVRGQ 135
>UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative;
n=3; Trichomonas vaginalis G3|Rep: Ribosomal protein
S13p/S18e, putative - Trichomonas vaginalis G3
Length = 155
Score = 67.3 bits (157), Expect = 2e-10
Identities = 28/69 (40%), Positives = 50/69 (72%)
Frame = +1
Query: 43 PDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 222
P F+ ++R+++TN+DG+R + A+T I G+GRR++ V+++A +D +RAG T +E E
Sbjct: 8 PAAFRDMVRMLSTNVDGRRPLYLALTNISGIGRRFAYAVVRRAGLDPLRRAGTLTPKEEE 67
Query: 223 KIITIMSNP 249
I++I+ NP
Sbjct: 68 LIVSIIQNP 76
Score = 59.3 bits (137), Expect = 5e-08
Identities = 25/58 (43%), Positives = 41/58 (70%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
++IP W LNR+ D G+ + +++L + +R ++ER+KK+R RG+RH GL+VRGQ
Sbjct: 79 HQIPVWMLNRRFDRATGQNTHWVATDLSANIRAEIERMKKMRMKRGIRHGLGLKVRGQ 136
>UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanosarcina acetivorans
Length = 162
Score = 66.9 bits (156), Expect = 3e-10
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = +3
Query: 261 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
+P W LNRQKD+ G+ L +++ RED+ LKK+RA+RG+RH GL+VRGQ
Sbjct: 89 VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144
Score = 57.6 bits (133), Expect = 2e-07
Identities = 25/63 (39%), Positives = 41/63 (65%)
Frame = +1
Query: 46 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 225
++ +H++RIMNT++ G + V +A+T + GVGRR + ++ K A +D G EEEV K
Sbjct: 18 EELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAK 77
Query: 226 IIT 234
+ T
Sbjct: 78 LDT 80
>UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S13P -
Thermoplasma acidophilum
Length = 171
Score = 65.3 bits (152), Expect = 8e-10
Identities = 27/64 (42%), Positives = 47/64 (73%)
Frame = +3
Query: 237 HVES*AYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLR 416
+VE+ Y +P+W LN +++ V GK L S++L+ +++ED+ +KKIR+++G+RH G +
Sbjct: 89 YVEAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKGKK 148
Query: 417 VRGQ 428
VRGQ
Sbjct: 149 VRGQ 152
Score = 58.4 bits (135), Expect = 9e-08
Identities = 22/59 (37%), Positives = 43/59 (72%)
Frame = +1
Query: 52 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 228
FQ+I+RI N +++G+R + A++ +KG+G R ++ ++ D+ +DK+ GE EE++EK+
Sbjct: 28 FQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKL 86
>UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11;
Archaea|Rep: 30S ribosomal protein S13P - Uncultured
methanogenic archaeon RC-I
Length = 224
Score = 61.3 bits (142), Expect = 1e-08
Identities = 26/67 (38%), Positives = 44/67 (65%)
Frame = +1
Query: 46 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 225
D+ ++I+RI NT++DG + V FA+T IKG+G R S I+ ++A +D G E+V+K
Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDK 126
Query: 226 IITIMSN 246
+ ++ N
Sbjct: 127 LRAVIDN 133
Score = 56.4 bits (130), Expect = 4e-07
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = +3
Query: 261 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
+P W LNR++DI G+ L +L ++ED+ +KKIR+++G+RH G +VRGQ
Sbjct: 138 VPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHERGQKVRGQ 193
>UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10;
Archaea|Rep: 30S ribosomal protein S13P - Sulfolobus
tokodaii
Length = 172
Score = 59.7 bits (138), Expect = 4e-08
Identities = 28/66 (42%), Positives = 42/66 (63%)
Frame = +3
Query: 231 HYHVES*AYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 410
+Y + ++P+W NR+KD G L +S+L +R D+ER KKI++ RG+RH G
Sbjct: 67 NYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLG 126
Query: 411 LRVRGQ 428
L+VRGQ
Sbjct: 127 LKVRGQ 132
Score = 54.4 bits (125), Expect = 2e-06
Identities = 20/68 (29%), Positives = 45/68 (66%)
Frame = +1
Query: 49 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 228
+F++I+R+ ++DG KV +A+ +KG+G + ++ K +D D+R GE ++E+++KI
Sbjct: 6 QFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKI 65
Query: 229 ITIMSNPR 252
+++ +
Sbjct: 66 ENYLTDKK 73
>UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanococcus jannaschii
Length = 150
Score = 58.8 bits (136), Expect = 7e-08
Identities = 24/67 (35%), Positives = 47/67 (70%)
Frame = +1
Query: 49 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 228
+F++++R+ T++DG +K++ A+ I GVG + +++ A +D +K AG TEEEV+KI
Sbjct: 5 EFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKI 64
Query: 229 ITIMSNP 249
++++P
Sbjct: 65 EEVLADP 71
Score = 58.8 bits (136), Expect = 7e-08
Identities = 27/58 (46%), Positives = 37/58 (63%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
+ IP W NR+KD V G+ + S+L +ED+ RLK+IR +RG+RH GL RGQ
Sbjct: 74 FGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHELGLPCRGQ 131
>UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 177
Score = 57.6 bits (133), Expect = 2e-07
Identities = 26/63 (41%), Positives = 40/63 (63%)
Frame = +3
Query: 240 VES*AYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 419
VE+ A +P+W N QKD G+ + T ++L R+D+ R+K I ++RG+RH G +V
Sbjct: 82 VENFADDVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKV 141
Query: 420 RGQ 428
RGQ
Sbjct: 142 RGQ 144
Score = 48.0 bits (109), Expect = 1e-04
Identities = 19/67 (28%), Positives = 41/67 (61%)
Frame = +1
Query: 46 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 225
+ ++ +RI T++DG + V A+T + G+G R + I+ +KAD+D G+ ++ +E+
Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIER 77
Query: 226 IITIMSN 246
++ + N
Sbjct: 78 VVERVEN 84
>UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiella
natans|Rep: Ribosomal protein S18 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 159
Score = 56.4 bits (130), Expect = 4e-07
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +3
Query: 264 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
P W +NR+ D + G + S+ LDS L+ED++RL I+ ++G+RH L+ RGQH
Sbjct: 86 PSWLMNRRADFLTGDNLHVLSTVLDSALQEDIKRLVTIKNNKGLRHLSRLKTRGQH 141
Score = 39.5 bits (88), Expect = 0.047
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +1
Query: 46 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 225
+K +RI + NI+G F + IKGVG R SN++ K D++ + + ++E+
Sbjct: 13 EKSMTFIRIFDCNINGSLSCNFGLRNIKGVGIRMSNVLRKILKKDINYKLYNIEKADLEE 72
Query: 226 IITI 237
++ I
Sbjct: 73 VVNI 76
>UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S13P -
Cenarchaeum symbiosum
Length = 227
Score = 54.8 bits (126), Expect = 1e-06
Identities = 23/55 (41%), Positives = 38/55 (69%)
Frame = +3
Query: 264 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
P WFLNR+KD+ G+ + +S+++ +R D+ER + + +G RH +GL+VRGQ
Sbjct: 122 PTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMFGLKVRGQ 176
Score = 47.2 bits (107), Expect = 2e-04
Identities = 19/74 (25%), Positives = 42/74 (56%)
Frame = +1
Query: 49 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 228
+++HI+RI+ ++ G++K + + I+G+G ++ +L ID + G T+E+V I
Sbjct: 50 EYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASI 109
Query: 229 ITIMSNPRHIRYQT 270
++ +P + T
Sbjct: 110 EKLLQDPAGAGFPT 123
>UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2;
Thermoproteaceae|Rep: 30S ribosomal protein S13P -
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
Length = 152
Score = 54.4 bits (125), Expect = 2e-06
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +3
Query: 264 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
P WFLNR+KD G+ L S L + D++ +KK+++ +G+RH GL+VRGQ
Sbjct: 75 PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKVRGQ 129
Score = 37.1 bits (82), Expect = 0.25
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +1
Query: 61 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 228
I+R+ +T+++G ++V +A+ I+G+G + + K ID G EE++ K+
Sbjct: 8 IVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKL 63
>UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4;
Methanococcus|Rep: 30S ribosomal protein S13P -
Methanococcus maripaludis
Length = 149
Score = 53.6 bits (123), Expect = 3e-06
Identities = 21/67 (31%), Positives = 45/67 (67%)
Frame = +1
Query: 49 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 228
+F+H +RI T+++GK + +A+ +KG+GR + V++ ++D ++AG +E+V KI
Sbjct: 5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKI 64
Query: 229 ITIMSNP 249
+++ +P
Sbjct: 65 ESVLEDP 71
Score = 52.8 bits (121), Expect = 5e-06
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +3
Query: 261 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
IP W NR+KD+ G L ++L ++ED+ +KKIR ++G+RH L RGQ
Sbjct: 76 IPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHELRLPCRGQ 131
>UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1;
uncultured euryarchaeote ARMAN-2|Rep: SSU ribosomal
protein S13AB - uncultured euryarchaeote ARMAN-2
Length = 177
Score = 50.8 bits (116), Expect = 2e-05
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
Y +P + LNR+ D+ GK L ++L +R+ + R +R RG RH +G +VRGQH
Sbjct: 88 YGVPKYLLNRRNDMDTGKDMHLIGNDLIFAVRQSINRDVTLRVWRGYRHQYGQKVRGQH 146
>UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory
specific medium-chain acyl CoA synthetase; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
olfactory specific medium-chain acyl CoA synthetase -
Ornithorhynchus anatinus
Length = 176
Score = 49.2 bits (112), Expect = 6e-05
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQL 320
YKIPDWFLNRQKD+ DGKYSQ+
Sbjct: 7 YKIPDWFLNRQKDVKDGKYSQV 28
>UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14;
Bacteria|Rep: 30S ribosomal protein S13 - Thermotoga
maritima
Length = 125
Score = 49.2 bits (112), Expect = 6e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +1
Query: 67 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 228
RI+ + +KV A+T I G+GR S +LK ID +KR G+ T+EE+ KI
Sbjct: 3 RIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKI 56
Score = 32.7 bits (71), Expect = 5.4
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 333 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
L S++ ++ RL +I +RG+RH GL VRGQ
Sbjct: 70 LRSEVERNIRRLIEIGCYRGIRHKLGLPVRGQ 101
>UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_31, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 48
Score = 48.8 bits (111), Expect = 8e-05
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +3
Query: 18 LNQNVAGHSRQISTYSSYHEYEHRWQTQGYVCDDGYQRCWP 140
L+ +V G R IST++S ++E RW+T+ +VC D +QR WP
Sbjct: 5 LSMSVLGSERGISTHTSCAQHERRWETEDHVCSDLHQRYWP 45
>UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S13P -
Nanoarchaeum equitans
Length = 153
Score = 46.8 bits (106), Expect = 3e-04
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
Y IP W NR++D GK L ++ + D++R +I + RG RH GL VRGQ
Sbjct: 78 YGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLPVRGQ 135
Score = 36.7 bits (81), Expect = 0.33
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +1
Query: 61 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 240
I+ I + ++DG + + + + GV +++ V ID ++ G ++EE+EK+ +
Sbjct: 13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDAL 72
Query: 241 SNP 249
NP
Sbjct: 73 RNP 75
>UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 14 contig 1, DNA
sequence - Ostreococcus tauri
Length = 272
Score = 44.0 bits (99), Expect = 0.002
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = -1
Query: 431 VLTTHTKAPVMSHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTINNILLPI*EPV 267
VLTT T APV+S SV +NLL+ L++ + +++ G L I I+L + EP+
Sbjct: 44 VLTTDTDAPVVSQTSVVSNLLQTLEVVAQLRVELVGHHLRELAILEIVLAVQEPI 98
>UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 82
Score = 35.9 bits (79), Expect = 0.58
Identities = 14/35 (40%), Positives = 26/35 (74%)
Frame = +3
Query: 327 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
+ L +L++++ER++ + ++RG RH GL VRGQ+
Sbjct: 5 TELKRRLQDNIERMRTMGSYRGRRHAMGLPVRGQN 39
>UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_7513_8304 - Giardia lamblia ATCC
50803
Length = 263
Score = 35.5 bits (78), Expect = 0.76
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 207 CAFASTLVKINVGFFENNVGVPPANTFDSRHRKHNLAFAIDVRIHDTKNMLKFV-WNDQR 31
C S V +NVGF E N+G N +S A+DV + T+ + V ND+
Sbjct: 104 CELTSAFVNVNVGFLEGNIGKAAPNPLNSDKGTLKYDLALDVCVKHTQEVPVVVGLNDRC 163
Query: 30 H 28
H
Sbjct: 164 H 164
>UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4;
Endopterygota|Rep: ENSANGP00000013280 - Anopheles
gambiae str. PEST
Length = 183
Score = 35.5 bits (78), Expect = 0.76
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +1
Query: 85 IDGKRKVMFAMTAIKGVGRRYSNIVLK---KADI-DLDKRAGECTEEEVEK 225
+D K KV A G+GR +S +LK K I DLD AGE T EE+EK
Sbjct: 1 MDLKNKVALVTGAATGLGRAFSEELLKHGAKVVICDLDSDAGELTVEELEK 51
>UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S13 - Prototheca wickerhamii
Length = 119
Score = 35.5 bits (78), Expect = 0.76
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 321 TSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
T S++ R++++RL I ++RG RH GL VRGQ
Sbjct: 66 TGSDVRRFTRQNIQRLVNIHSYRGYRHIQGLPVRGQ 101
>UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycoplasma
hyopneumoniae|Rep: 30S ribosomal protein S13 -
Mycoplasma hyopneumoniae (strain 232)
Length = 137
Score = 35.5 bits (78), Expect = 0.76
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +3
Query: 321 TSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
T +L +++ +++RL +I+ +RG+RH GL VRGQ
Sbjct: 78 TEGDLHREVQSNIKRLIEIKCYRGIRHRKGLPVRGQ 113
>UniRef50_UPI00004999F3 Cluster: hypothetical protein 23.t00039;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 23.t00039 - Entamoeba histolytica HM-1:IMSS
Length = 592
Score = 34.7 bits (76), Expect = 1.3
Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Frame = -1
Query: 377 NLLEPLQIFTEF*IQVGGGQLAVFTINNIL-LPI*EPVWYLICLGF--DMIVIIFST--- 216
NL + LQ T F I G F I +L L I P+ I + + I IF +
Sbjct: 312 NLYQQLQYSTHFYIPSGLTSYINFPIIILLILAITAPIILFILISIIPESICYIFKSYTD 371
Query: 215 SSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAV----IANITLRLPSMFVF 75
SSS SP +L FL T E PT + V I + TL +P +F+F
Sbjct: 372 SSSKSSPKQLMVLSDIFLSTKTEISHPTTIYLVIFYFILSTTLYIPYLFLF 422
>UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5;
Eurotiomycetidae|Rep: 40S ribosomal protein S13 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 169
Score = 34.7 bits (76), Expect = 1.3
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 327 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
++L ++ +D++RLK+ ++RG RH GL VRGQ
Sbjct: 103 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQ 136
>UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7;
Pezizomycotina|Rep: 40S ribosomal protein S13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 118
Score = 34.7 bits (76), Expect = 1.3
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 327 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
++L ++ +D++RLK+ ++RG RH GL VRGQ
Sbjct: 66 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQ 99
>UniRef50_Q849N3 Cluster: Putative uncharacterized protein pSV2.07;
n=1; Streptomyces violaceoruber|Rep: Putative
uncharacterized protein pSV2.07 - Streptomyces
violaceoruber
Length = 652
Score = 34.3 bits (75), Expect = 1.8
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -1
Query: 311 VFTINNILLPI*EPVWYLICLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLE 147
V T+N + +P WY + ++ I+ TS S+H+PA+ S ++A + +E
Sbjct: 281 VTTLNTAQAHLDQPSWYNPADALNRLLEIYLTSRSIHAPAKDSTGLTALISPAVE 335
>UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1;
Oltmannsiellopsis viridis|Rep: Ribosomal protein S13 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 117
Score = 34.3 bits (75), Expect = 1.8
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 342 KLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
K RE+++RL +I ++RG RH GL RGQ
Sbjct: 72 KKRENIQRLVRISSYRGFRHTAGLPCRGQ 100
>UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 130
Score = 34.3 bits (75), Expect = 1.8
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 327 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
++L ++ +D++RLK+ +RG RH GL VRGQ
Sbjct: 65 NDLRRQVLDDIKRLKETGTYRGRRHALGLPVRGQ 98
>UniRef50_UPI00015B5897 Cluster: PREDICTED: similar to lin-9 homolog
(C. elegans); n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to lin-9 homolog (C. elegans) - Nasonia
vitripennis
Length = 631
Score = 33.9 bits (74), Expect = 2.3
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = +1
Query: 4 TLVRNLTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIV--LKKADI 177
T + N+ K+S ++ K +I ++ N + +++ R+Y+ IV L K +
Sbjct: 435 TFLENIVKVSKILSIKKINIKKLKEMNSEAEKRRSVGENFPPDFERKYAGIVVELDKMNT 494
Query: 178 DLDKRA----GECTEEEVEKIITIMSNPRHIR 261
DL + G C E E IT M P H+R
Sbjct: 495 DLQELLNDVQGTCHEIAPEASITAMLTPSHLR 526
>UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S13 -
Victivallis vadensis ATCC BAA-548
Length = 131
Score = 33.9 bits (74), Expect = 2.3
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 318 LTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
L +L L D+ RL++I +RG+RH L VRGQ
Sbjct: 65 LVEGDLRRTLAADIRRLQQINCYRGIRHRRSLPVRGQ 101
>UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit
S37; n=1; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit S37 - Schizosaccharomyces
pombe (Fission yeast)
Length = 151
Score = 33.9 bits (74), Expect = 2.3
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 354 DLERLKKIRAHRGMRHYWGLRVRGQH 431
D+ RL IR +RGMRH GL V GQ+
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101
>UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellular
organisms|Rep: 30S ribosomal protein S13 - Aquifex
aeolicus
Length = 126
Score = 33.9 bits (74), Expect = 2.3
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +3
Query: 276 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
LN + +D Y +L +++ ++++LK + +RG+RH GL VRGQ
Sbjct: 53 LNTLRKFIDENYK--VEGDLRREVQLNIKKLKDMGCYRGIRHARGLPVRGQ 101
>UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium
loti|Rep: Mll1963 protein - Rhizobium loti
(Mesorhizobium loti)
Length = 315
Score = 33.5 bits (73), Expect = 3.1
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 204 AFASTLVKINVGFFENNVG-VPPANTFDSRHRK-HNLAFAIDVRIHDTKNML 55
AFA T V+ VGF++ VG + +D +K H+ AF DV + DTK L
Sbjct: 23 AFAETPVEPTVGFYKYTVGDIEVTAIYDGIWKKPHDPAFIKDVSVEDTKAAL 74
>UniRef50_A5FGA8 Cluster: DNA-(Apurinic or apyrimidinic site) lyase;
n=1; Flavobacterium johnsoniae UW101|Rep: DNA-(Apurinic
or apyrimidinic site) lyase - Flavobacterium johnsoniae
UW101
Length = 216
Score = 33.5 bits (73), Expect = 3.1
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 43 PDKFQHILRIMNT--NIDGKRKVMFAMTAIKGVGRRYSNIVLKKAD 174
P K Q +L I +T N + M +TA+KG+GR+ +N++L++ +
Sbjct: 87 PTKAQWLLEIAHTIQNDNDIPLTMSGLTALKGIGRKSANVILRETE 132
>UniRef50_Q9TCB7 Cluster: Ribosomal protein S13; n=1; Nephroselmis
olivacea|Rep: Ribosomal protein S13 - Nephroselmis
olivacea
Length = 125
Score = 33.5 bits (73), Expect = 3.1
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 312 SQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
S +T S L +++D+ RL I +RG R+ L VRGQ
Sbjct: 63 SYVTGSKLKRTIQQDMSRLISISCYRGFRYIQKLPVRGQ 101
>UniRef50_Q7PDN3 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=5;
Plasmodium (Vinckeia)|Rep: ERYTHROCYTE MEMBRANE PROTEIN
PFEMP3 - Plasmodium yoelii yoelii
Length = 1781
Score = 33.1 bits (72), Expect = 4.1
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Frame = -3
Query: 279 LGTSLVSYMPRIRHDSD--NFFNLFFCAFASTLVKINVGFFENNVGVPPANTFDSRHRKH 106
LGTS+ +I ++++ NF +L C AS+L K+N+ + + N
Sbjct: 550 LGTSIDESNKKIINENNKYNFMSLQSCVDASSLYKLNINDYSSTTNNHHTNNNKKFKSAL 609
Query: 105 NLAFAIDVRIHDTKNML----KFVWNDQRHFG 22
N + +T N F++N RHFG
Sbjct: 610 NSETEFSISQSETNNNFSLFNNFLYNTMRHFG 641
>UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomonas
americana|Rep: Ribosomal protein S13 - Reclinomonas
americana
Length = 122
Score = 33.1 bits (72), Expect = 4.1
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 318 LTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
L S L +++RL I+++RG+RH +GL V GQ
Sbjct: 65 LIESELRKNQTYNIKRLLDIKSYRGLRHAYGLPVHGQ 101
>UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of strain
CLIB122 of Yarrowia lipolytica; n=2;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome B
of strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 156
Score = 33.1 bits (72), Expect = 4.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 327 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
S+L K+ D+ER +K ++ G RH G+ V+GQ
Sbjct: 70 SDLAKKINADIERKRKTGSYVGRRHVMGMPVKGQ 103
>UniRef50_A1L3M1 Cluster: LOC100037042 protein; n=1; Xenopus
laevis|Rep: LOC100037042 protein - Xenopus laevis
(African clawed frog)
Length = 384
Score = 32.7 bits (71), Expect = 5.4
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 237 HVES*AYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 371
H E KIPD LN + V +S+ + N +S+L+ D +R+K
Sbjct: 9 HKEEQEQKIPDPLLNGDAEDVPQHFSETPTCNTESRLQADQQRIK 53
>UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma
viride|Rep: Ribosomal protein S13 - Mesostigma viride
Length = 116
Score = 32.7 bits (71), Expect = 5.4
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 333 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
L +++ + ERL KI ++RG RH+ GL RGQ
Sbjct: 72 LINRIHLNKERLIKISSYRGFRHHRGLPARGQ 103
>UniRef50_Q4A8Y3 Cluster: Glutamyl-tRNA amidotransferase subunit B;
n=3; Mycoplasma hyopneumoniae|Rep: Glutamyl-tRNA
amidotransferase subunit B - Mycoplasma hyopneumoniae
(strain 7448)
Length = 466
Score = 32.3 bits (70), Expect = 7.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 267 LVSYMPRIRHDSDNFFNLFFCAFASTLVKIN 175
+ S P +R +++ FFNLF A+ TL KIN
Sbjct: 23 MFSNSPNLRGEANQFFNLFDLAYLGTLPKIN 53
>UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellular
organisms|Rep: 30S ribosomal protein S13 - Zymomonas
mobilis
Length = 122
Score = 32.3 bits (70), Expect = 7.1
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 288 KDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
++ +D Y+ +L ++ +++RL + +RG+RH GL VRGQ
Sbjct: 57 REAIDADYT--VEGDLRRQVAMNIKRLMDLACYRGLRHRKGLPVRGQ 101
>UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast
precursor; n=6; cellular organisms|Rep: 30S ribosomal
protein S13, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 169
Score = 32.3 bits (70), Expect = 7.1
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 357 LERLKKIRAHRGMRHYWGLRVRGQ 428
++RLK+I+ +RG+RH GL RGQ
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQ 145
>UniRef50_Q47VK1 Cluster: LPS-assembly protein precursor; n=1;
Colwellia psychrerythraea 34H|Rep: LPS-assembly protein
precursor - Colwellia psychrerythraea (strain 34H / ATCC
BAA-681) (Vibriopsychroerythus)
Length = 771
Score = 32.3 bits (70), Expect = 7.1
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 234 YHVES*-AYKI--PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLER-LKKIRAHRGMRH 401
YHVE+ + I P WFLN + ++ Y Q + + S L E ++R L K+R H G+
Sbjct: 424 YHVEAGFTFPITRPSWFLNSEVKLMHTYYQQ-DNISAGSSLEETVDRTLPKVRIHAGVNF 482
Query: 402 YWGLRVRGQ 428
L GQ
Sbjct: 483 DRQLLAFGQ 491
>UniRef50_UPI00006CB1B8 Cluster: insulysin, putative; n=1;
Tetrahymena thermophila SB210|Rep: insulysin, putative -
Tetrahymena thermophila SB210
Length = 969
Score = 31.9 bits (69), Expect = 9.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 269 VWYLICLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLE 147
VW + C +I + F S V P LS+ + AF+ MLE
Sbjct: 801 VWSMTCAERTVIYVYFQIQSDVKPPQYLSQQIEAFVDEMLE 841
>UniRef50_A3IUX9 Cluster: Putative uncharacterized protein; n=1;
Cyanothece sp. CCY 0110|Rep: Putative uncharacterized
protein - Cyanothece sp. CCY 0110
Length = 227
Score = 31.9 bits (69), Expect = 9.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 264 PDWFLNRQK--DIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 428
P W +++ ++ + + L D+ L DL+ K + A G+R YW + VRG+
Sbjct: 109 PTWEAGQRRYINLAEVRVPDLVGEVGDTTLATDLDEKKHLYAKLGIREYWVIDVRGK 165
>UniRef50_Q7RQE1 Cluster: Protein factor associated with
neutral-sphingomyelinase activation; n=3; Plasmodium
(Vinckeia)|Rep: Protein factor associated with
neutral-sphingomyelinase activation - Plasmodium yoelii
yoelii
Length = 1490
Score = 31.9 bits (69), Expect = 9.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 177 NVGFFENNVGVPPANTFDSRHRKHNL 100
N+ F NN PP NTF+ ++K+N+
Sbjct: 1189 NLSQFSNNCATPPINTFEKENQKYNV 1214
>UniRef50_P15758 Cluster: Mitochondrial ribosomal protein S13; n=4;
Magnoliophyta|Rep: Mitochondrial ribosomal protein S13 -
Oenothera bertiana (Bertero's evening primrose)
Length = 114
Score = 31.9 bits (69), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 348 REDLERLKKIRAHRGMRHYWGLRVRGQ 428
R D+ER I +RG+RH GL +RGQ
Sbjct: 73 RADIERFISISCYRGIRHQDGLPLRGQ 99
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,274,960
Number of Sequences: 1657284
Number of extensions: 9675851
Number of successful extensions: 28590
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 27867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28585
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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