Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30097
         (409 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    41   0.008
UniRef50_A1SQA8 Cluster: Protein kinase; n=1; Nocardioides sp. J...    34   1.3  
UniRef50_A5FN75 Cluster: Acyltransferase 3; n=1; Flavobacterium ...    33   1.7  
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    33   1.7  
UniRef50_A2FLN6 Cluster: Putative uncharacterized protein; n=1; ...    33   2.9  
UniRef50_A1UNV4 Cluster: Transcription elongation factor; n=5; M...    31   8.9  
UniRef50_Q6BL89 Cluster: Similar to KLLA0E01782g Kluyveromyces l...    31   8.9  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 41.1 bits (92), Expect = 0.008
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +2

Query: 278  LCGRQRLGSAPGIAEVHGQR 337
            L GRQRLGSAPGIAEVHG+R
Sbjct: 967  LSGRQRLGSAPGIAEVHGRR 986


>UniRef50_A1SQA8 Cluster: Protein kinase; n=1; Nocardioides sp.
           JS614|Rep: Protein kinase - Nocardioides sp. (strain
           BAA-499 / JS614)
          Length = 488

 Score = 33.9 bits (74), Expect = 1.3
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -1

Query: 385 APAGRLVHGPPDGEWLPLPMDFSNARGRAKPLPTAKILDSPV 260
           A  G      P G WLPL  D +    R  PLP ++ L  PV
Sbjct: 268 AALGADADADPSGPWLPLDPDLTRPGARPSPLPPSRPLADPV 309


>UniRef50_A5FN75 Cluster: Acyltransferase 3; n=1; Flavobacterium
           johnsoniae UW101|Rep: Acyltransferase 3 - Flavobacterium
           johnsoniae UW101
          Length = 366

 Score = 33.5 bits (73), Expect = 1.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 141 FDLKWPVIYMISERIKYIWITYIFILNKFNIILRN 245
           F L WP+I   +E+++ ++I  IF  N  N+++RN
Sbjct: 161 FYLIWPLIINRTEKLEKLFILIIFFYNLLNVVIRN 195


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 33.5 bits (73), Expect = 1.7
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +3

Query: 327 MGNGNHSPSGGPCTSLPAGA 386
           MG+GNHSPSG P  SLP  A
Sbjct: 1   MGDGNHSPSGRPYASLPTRA 20


>UniRef50_A2FLN6 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 2865

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -1

Query: 376  GRLVHGPPDGEWL-PLPMDF--SNARGRAKPLPTAKILDSPVLI 254
            GR+   PP  +W+ PL + F  S A+   KPLPTA   +S ++I
Sbjct: 2784 GRMGLPPPGSKWMTPLQIQFKMSEAQDAQKPLPTAMTCNSTMII 2827


>UniRef50_A1UNV4 Cluster: Transcription elongation factor; n=5;
           Mycobacterium|Rep: Transcription elongation factor -
           Mycobacterium sp. (strain KMS)
          Length = 153

 Score = 31.1 bits (67), Expect = 8.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 264 GESRIFAVGSGLALPLALLKSMGNGNHSPSG 356
           G+ R + V SG ++P+ LLK++  G H P G
Sbjct: 123 GDRRTYEVPSGASVPVTLLKAVPFGMHHPRG 153


>UniRef50_Q6BL89 Cluster: Similar to KLLA0E01782g Kluyveromyces
           lactis; n=2; Saccharomycetaceae|Rep: Similar to
           KLLA0E01782g Kluyveromyces lactis - Debaryomyces
           hansenii (Yeast) (Torulaspora hansenii)
          Length = 566

 Score = 31.1 bits (67), Expect = 8.9
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 150 KWPVIYMISERIKYIWITYIFILNKFNIILRNY*IIN--TGESRIFAVGSGLALPLALLK 323
           K P+   IS       + Y F+++ FN+I++ Y  +N   G +    VGSG+    A+  
Sbjct: 330 KIPITSQISLFFNNGRVKYAFLVSAFNMIMQQYCGVNILVGYTTTILVGSGVDPKTAIAG 389

Query: 324 SMGNG 338
           S+G G
Sbjct: 390 SIGIG 394


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,276,213
Number of Sequences: 1657284
Number of extensions: 7367654
Number of successful extensions: 16618
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16616
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)