Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G06
(521 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q7T2P7 Cluster: Glutamine synthetase; n=4; Coelomata|Re... 96 5e-19
UniRef50_P15104 Cluster: Glutamine synthetase; n=312; cellular o... 90 2e-17
UniRef50_Q42688 Cluster: Glutamine synthetase cytosolic isozyme;... 77 3e-13
UniRef50_O96463 Cluster: Glutamine synthetase; n=1; Skeletonema ... 71 2e-11
UniRef50_A1L199 Cluster: Glutamine synthetase; n=24; Eukaryota|R... 70 3e-11
UniRef50_Q43127 Cluster: Glutamine synthetase, chloroplast/mitoc... 69 5e-11
UniRef50_Q874T6 Cluster: Glutamine synthetase; n=5; Fungi/Metazo... 68 2e-10
UniRef50_A0PCY1 Cluster: Glutamine synthetase precursor; n=1; Gu... 57 2e-07
UniRef50_A0DB13 Cluster: Chromosome undetermined scaffold_44, wh... 56 4e-07
UniRef50_Q5UR44 Cluster: Putative glutamine synthetase; n=1; Aca... 56 7e-07
UniRef50_Q4QJ42 Cluster: Glutamine synthetase, putative; n=12; E... 55 1e-06
UniRef50_Q7M314 Cluster: Glutamate-ammonia ligase; n=1; Bos taur... 52 8e-06
UniRef50_P20805 Cluster: Glutamine synthetase 2; n=19; Frankia|R... 50 2e-05
UniRef50_P04772 Cluster: Glutamine synthetase 2; n=211; Bacteria... 49 7e-05
UniRef50_Q6N241 Cluster: Glutamine synthetase II; n=16; Bacteria... 48 1e-04
UniRef50_UPI0000F20B38 Cluster: PREDICTED: hypothetical protein;... 47 2e-04
UniRef50_Q42689 Cluster: Glutamine synthetase, chloroplast precu... 38 0.11
UniRef50_UPI000065D6C6 Cluster: Rho guanine nucleotide exchange ... 37 0.24
UniRef50_Q9BIT1 Cluster: Fibroin 2; n=1; Plectreurys tristis|Rep... 34 1.7
UniRef50_Q5A3J6 Cluster: Potential CCR4-NOT complex associated f... 33 3.0
UniRef50_UPI0000E48261 Cluster: PREDICTED: similar to AGL019Wp; ... 33 5.2
UniRef50_A6LWB4 Cluster: SEC-C motif domain protein; n=1; Clostr... 33 5.2
UniRef50_O41930 Cluster: DNA polymerase; n=128; Gammaherpesvirin... 32 6.9
UniRef50_Q0UJ67 Cluster: Predicted protein; n=1; Phaeosphaeria n... 32 6.9
UniRef50_Q6UWJ8 Cluster: CD164 sialomucin-like 2 protein precurs... 32 6.9
UniRef50_Q58WQ4 Cluster: Hemin-binding protein; n=1; uncultured ... 32 9.2
>UniRef50_Q7T2P7 Cluster: Glutamine synthetase; n=4; Coelomata|Rep:
Glutamine synthetase - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 371
Score = 95.9 bits (228), Expect = 5e-19
Identities = 45/80 (56%), Positives = 58/80 (72%)
Frame = +3
Query: 204 LTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPI 383
+ S ++ LSK + +Y +LP D++ A YIWIDG+GE LRCK RTL+ PK+ +DLP
Sbjct: 1 MATSASSQLSKVVKQQYMELP-QGDQVQAMYIWIDGTGEGLRCKTRTLDSEPKSIEDLPE 59
Query: 384 WNFDGSSTNQADGHNSDTYL 443
WNFDGSST QA+G NSD YL
Sbjct: 60 WNFDGSSTYQAEGSNSDMYL 79
>UniRef50_P15104 Cluster: Glutamine synthetase; n=312; cellular
organisms|Rep: Glutamine synthetase - Homo sapiens
(Human)
Length = 373
Score = 90.2 bits (214), Expect = 2e-17
Identities = 43/80 (53%), Positives = 56/80 (70%)
Frame = +3
Query: 204 LTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPI 383
+T S ++ L+K + Y LP +K+ A YIWIDG+GE LRCK RTL+ PK ++LP
Sbjct: 1 MTTSASSHLNKGIKQVYMSLP-QGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPE 59
Query: 384 WNFDGSSTNQADGHNSDTYL 443
WNFDGSST Q++G NSD YL
Sbjct: 60 WNFDGSSTLQSEGSNSDMYL 79
>UniRef50_Q42688 Cluster: Glutamine synthetase cytosolic isozyme;
n=6; Eukaryota|Rep: Glutamine synthetase cytosolic
isozyme - Chlamydomonas reinhardtii
Length = 382
Score = 76.6 bits (180), Expect = 3e-13
Identities = 33/55 (60%), Positives = 40/55 (72%)
Frame = +3
Query: 279 KILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 443
KI A Y+WI GS +R K RTL+ IP P+DLP WN+DGSST QA GH+S+ YL
Sbjct: 37 KICAEYVWIGGSMHDVRSKSRTLSTIPTKPEDLPHWNYDGSSTGQAPGHDSEVYL 91
>UniRef50_O96463 Cluster: Glutamine synthetase; n=1; Skeletonema
costatum|Rep: Glutamine synthetase - Skeletonema
costatum (Marine centric diatom)
Length = 410
Score = 70.5 bits (165), Expect = 2e-11
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +3
Query: 228 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFI-PKAPKDLPIWNFDGSS 404
L +++ R++ LP P DK+LA Y+W+D GE R K RTL +A LP WNFDGSS
Sbjct: 45 LDTSVVDRFSALPYPDDKVLAEYVWVDAKGE-CRSKTRTLPVARTEAVDKLPNWNFDGSS 103
Query: 405 TNQADGHNSDTYL 443
T+QA G +S+ L
Sbjct: 104 TDQAPGDDSEVIL 116
>UniRef50_A1L199 Cluster: Glutamine synthetase; n=24; Eukaryota|Rep:
Glutamine synthetase - Homo sapiens (Human)
Length = 258
Score = 70.1 bits (164), Expect = 3e-11
Identities = 30/49 (61%), Positives = 37/49 (75%)
Frame = +3
Query: 297 IWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 443
+W G+GE LRCK RTL+ PK ++LP WNFDGSST Q++G NSD YL
Sbjct: 1 LWAGGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYL 49
>UniRef50_Q43127 Cluster: Glutamine synthetase,
chloroplast/mitochondrial precursor; n=594;
Viridiplantae|Rep: Glutamine synthetase,
chloroplast/mitochondrial precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 430
Score = 69.3 bits (162), Expect = 5e-11
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +3
Query: 165 KIEDNPKILSGPVLT-NSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDR 341
K + N K+ VL S N+ +++ D +D+I+A YIWI GSG LR K R
Sbjct: 37 KKQSNNKVRGFRVLALQSDNSTVNRVETLLNLDTKPYSDRIIAEYIWIGGSGIDLRSKSR 96
Query: 342 TLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 443
T+ + P +LP WN+DGSST QA G +S+ L
Sbjct: 97 TIEKPVEDPSELPKWNYDGSSTGQAPGEDSEVIL 130
Score = 33.1 bits (72), Expect = 4.0
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 361 KLPKICLYGTSMAAQPTKLMGTILIPTSXPRAIYKDPFRRGNHILV 498
+LPK G+S P + IL P +AI++DPFR GN+ILV
Sbjct: 107 ELPKWNYDGSSTGQAPGEDSEVILYP----QAIFRDPFRGGNNILV 148
>UniRef50_Q874T6 Cluster: Glutamine synthetase; n=5; Fungi/Metazoa
group|Rep: Glutamine synthetase - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 372
Score = 67.7 bits (158), Expect = 2e-10
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +3
Query: 225 VLSKT-LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGS 401
++ KT +L +Y +L I+A Y+WID G LR K RTLN + LP WNFDGS
Sbjct: 7 IVEKTHILQKYLELD-QRGAIIAEYVWIDSEGG-LRSKGRTLNKKVTSVDSLPEWNFDGS 64
Query: 402 STNQADGHNSDTYL 443
ST QA GH+SD YL
Sbjct: 65 STGQAPGHDSDIYL 78
>UniRef50_A0PCY1 Cluster: Glutamine synthetase precursor; n=1;
Guillardia theta|Rep: Glutamine synthetase precursor -
Guillardia theta (Cryptomonas phi)
Length = 160
Score = 57.2 bits (132), Expect = 2e-07
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Frame = +3
Query: 279 KILATYIWIDGSG---EHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 443
K A YIWI G G + R K R L+ P + +LP+WN+DGSST QA G +S+ YL
Sbjct: 68 KCRAEYIWIGGRGGCGDDYRSKTRVLDKRPTSVSELPLWNYDGSSTGQAPGGDSEIYL 125
>UniRef50_A0DB13 Cluster: Chromosome undetermined scaffold_44, whole
genome shotgun sequence; n=11; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_44, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 398
Score = 56.4 bits (130), Expect = 4e-07
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = +3
Query: 282 ILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 443
+LA YIWIDG+GE LR K + K +DL W +DGSST+QA S+ YL
Sbjct: 25 VLAEYIWIDGTGEQLRSKTKVYQTQIKRLEDLEWWTYDGSSTDQAVTRFSEIYL 78
>UniRef50_Q5UR44 Cluster: Putative glutamine synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Putative glutamine
synthetase - Mimivirus
Length = 353
Score = 55.6 bits (128), Expect = 7e-07
Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 3/53 (5%)
Frame = +3
Query: 294 YIWIDGSGEHLRCKDRTL-NFIPKAPK--DLPIWNFDGSSTNQADGHNSDTYL 443
Y+WI G+GE LR K R L + I K D+P+WN+DGSSTNQA+G +S+ +L
Sbjct: 23 YVWIGGNGE-LRSKTRVLYSSIMTGYKLSDIPVWNYDGSSTNQANGSSSEVFL 74
>UniRef50_Q4QJ42 Cluster: Glutamine synthetase, putative; n=12;
Eukaryota|Rep: Glutamine synthetase, putative -
Leishmania major
Length = 536
Score = 54.8 bits (126), Expect = 1e-06
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Frame = +3
Query: 192 SGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEH--LRCKDRTLNF---- 353
S P N+ A + +S N + TYIW+ G H +R KDRT+
Sbjct: 141 SSPTTDNTATAATNSITMSSSNK-----QTVRVTYIWLSGKDSHHDIRSKDRTMYLSQEN 195
Query: 354 IPKAPKDL------PIWNFDGSSTNQADGHNSDTYL 443
+ K PKDL P+WNFDGSST QA G +++ L
Sbjct: 196 VAKHPKDLLANGVFPVWNFDGSSTGQAKGVDTEILL 231
>UniRef50_Q7M314 Cluster: Glutamate-ammonia ligase; n=1; Bos
taurus|Rep: Glutamate-ammonia ligase - Bos taurus
(Bovine)
Length = 149
Score = 52.0 bits (119), Expect = 8e-06
Identities = 26/47 (55%), Positives = 29/47 (61%)
Frame = +3
Query: 228 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAP 368
L K + Y LP DK+ A YIWIDG+GE LRCK RTL PK P
Sbjct: 1 LBKGIKZVYMALP-QGDKVQAMYIWIDGTGEGLRCKTRTLXSXPKKP 46
>UniRef50_P20805 Cluster: Glutamine synthetase 2; n=19; Frankia|Rep:
Glutamine synthetase 2 - Frankia alni
Length = 352
Score = 50.4 bits (115), Expect = 2e-05
Identities = 27/52 (51%), Positives = 31/52 (59%)
Frame = +3
Query: 288 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 443
A YIWIDG+ + +T I K K+ IW FDGSSTNQA G NSD L
Sbjct: 5 AEYIWIDGTEPEPLMRSKTR--IIKDGKEPEIWGFDGSSTNQAPGSNSDCVL 54
>UniRef50_P04772 Cluster: Glutamine synthetase 2; n=211;
Bacteria|Rep: Glutamine synthetase 2 - Bradyrhizobium
japonicum
Length = 344
Score = 48.8 bits (111), Expect = 7e-05
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +3
Query: 294 YIWIDG--SGEHLRCKDRTLNFIP-KAPKDLPIWNFDGSSTNQADGHNSDTYL 443
YIW+DG +LR K + F + LP+W FDGSST QA+GH+SD L
Sbjct: 8 YIWLDGYTPTPNLRGKTQIKEFASFPTLEQLPLWGFDGSSTQQAEGHSSDCVL 60
>UniRef50_Q6N241 Cluster: Glutamine synthetase II; n=16;
Bacteria|Rep: Glutamine synthetase II - Rhodopseudomonas
palustris
Length = 345
Score = 48.4 bits (110), Expect = 1e-04
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +3
Query: 294 YIWIDG--SGEHLRCKDRTLNF-IPKAPKDLPIWNFDGSSTNQADGHNSDTYL 443
YIW+DG +LR K F I + LP+W FDGSST QA+GH+SD L
Sbjct: 8 YIWLDGYKPTPNLRGKTTIKEFEIYPTLEQLPLWGFDGSSTMQAEGHSSDCVL 60
>UniRef50_UPI0000F20B38 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 277
Score = 47.2 bits (107), Expect = 2e-04
Identities = 25/59 (42%), Positives = 34/59 (57%)
Frame = +3
Query: 213 SPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWN 389
S ++ L+K L RY +LP D L TY+WID G L K RT++ PK D+P W+
Sbjct: 5 SESSHLNKFLRHRYLNLP-QGDFCLVTYVWIDSCGVDLYSKTRTMDCEPKILADVPEWD 62
>UniRef50_Q42689 Cluster: Glutamine synthetase, chloroplast
precursor; n=17; cellular organisms|Rep: Glutamine
synthetase, chloroplast precursor - Chlamydomonas
reinhardtii
Length = 380
Score = 38.3 bits (85), Expect = 0.11
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Frame = +3
Query: 288 ATYIWIDGSG---------EHLRCKDRTLNF-IPKAPKDLPIWNFDGSSTNQADGHNSDT 437
A YIW DG+ +R K + + + P W+FDGSST QA+G+NSD
Sbjct: 37 AEYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDC 96
Query: 438 YL 443
L
Sbjct: 97 IL 98
>UniRef50_UPI000065D6C6 Cluster: Rho guanine nucleotide exchange
factor 10.; n=1; Takifugu rubripes|Rep: Rho guanine
nucleotide exchange factor 10. - Takifugu rubripes
Length = 987
Score = 37.1 bits (82), Expect = 0.24
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = -2
Query: 286 RILSAGSGRSLYRLSSVLDSTAF--GELVKTGPDRIFGLSSILVCAVSAI-LKQVRHDYV 116
++LS GS R L R ++++ GE++KT R+F L+ +L+CA I L D V
Sbjct: 327 KLLSNGS-RYLIRSDDMIETVYSDRGEIIKTKERRLFLLNDVLMCATPNIRLPLSASDLV 385
Query: 115 LKCSL 101
LKC+L
Sbjct: 386 LKCAL 390
>UniRef50_Q9BIT1 Cluster: Fibroin 2; n=1; Plectreurys tristis|Rep:
Fibroin 2 - Plectreurys tristis (Spider)
Length = 764
Score = 34.3 bits (75), Expect = 1.7
Identities = 22/65 (33%), Positives = 37/65 (56%)
Frame = -2
Query: 277 SAGSGRSLYRLSSVLDSTAFGELVKTGPDRIFGLSSILVCAVSAILKQVRHDYVLKCSLD 98
SAGSG SLY LS++L TA + K+ P+ + +L+ +++ I+ + + S
Sbjct: 698 SAGSGLSLYTLSNLLSQTALA-ISKSRPE--LSPNEVLIQSLAEIIVALVQALTKQASSS 754
Query: 97 ASVEY 83
ASV+Y
Sbjct: 755 ASVQY 759
>UniRef50_Q5A3J6 Cluster: Potential CCR4-NOT complex associated
factor Caf120p; n=1; Candida albicans|Rep: Potential
CCR4-NOT complex associated factor Caf120p - Candida
albicans (Yeast)
Length = 1021
Score = 33.5 bits (73), Expect = 3.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 177 NPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHL 326
N +LS + N+ +V + +Y+DL P+D I ++GS EHL
Sbjct: 491 NDNLLSADKMKNNHKSVQLAEIYQKYSDLKTPSDNYTDRNILLNGSHEHL 540
>UniRef50_UPI0000E48261 Cluster: PREDICTED: similar to AGL019Wp;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to AGL019Wp - Strongylocentrotus purpuratus
Length = 967
Score = 32.7 bits (71), Expect = 5.2
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -3
Query: 348 SRCDLCTSGVRQSRRSKCRWRESCQPAV--EDHCIDSVAFWTALRSGSWLKPAPIESSDY 175
SRC C S VR + R C+W+ S + V E H S W + + +W ++ +
Sbjct: 32 SRCQRCGSSVRVAVRQSCQWQCSTRRRVCPEGHTTSS---WCSRETINWSHIGDLKQASA 88
Query: 174 LLF 166
+LF
Sbjct: 89 ILF 91
>UniRef50_A6LWB4 Cluster: SEC-C motif domain protein; n=1;
Clostridium beijerinckii NCIMB 8052|Rep: SEC-C motif
domain protein - Clostridium beijerinckii NCIMB 8052
Length = 603
Score = 32.7 bits (71), Expect = 5.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 339 RTLNFIPKAPKDLPIWNFDGSSTNQADGHN 428
R N + K K++P+W + G++ N+ +G+N
Sbjct: 537 RVFNIVNKFIKNIPLWKYKGANINEKEGNN 566
>UniRef50_O41930 Cluster: DNA polymerase; n=128;
Gammaherpesvirinae|Rep: DNA polymerase - Murid
herpesvirus 4 (MuHV-4) (Murine gammaherpesvirus 68)
Length = 1027
Score = 32.3 bits (70), Expect = 6.9
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +3
Query: 207 TNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLR 329
TN P+ + K L+SR +LP D+I Y++IDGS + L+
Sbjct: 907 TNLPHLAVFKKLVSRQEELPQIHDRI--PYVFIDGSEKGLK 945
>UniRef50_Q0UJ67 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 171
Score = 32.3 bits (70), Expect = 6.9
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 180 PKILSGPVLTNSPNAV--LSKTLLSRYNDLPLPADKI 284
PK + GP++TNS AV LS TL S++ LP+ +
Sbjct: 100 PKAVGGPIITNSITAVSPLSSTLQSKFPKTSLPSPSV 136
>UniRef50_Q6UWJ8 Cluster: CD164 sialomucin-like 2 protein precursor;
n=18; Eutheria|Rep: CD164 sialomucin-like 2 protein
precursor - Homo sapiens (Human)
Length = 174
Score = 32.3 bits (70), Expect = 6.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 342 CDLCTSGVRQSRRSKCRWRESCQPAVEDHCI 250
C+ C G R S C W E C+P HC+
Sbjct: 60 CEHCVEGDRARNLSSCMW-EQCRPEEPGHCV 89
>UniRef50_Q58WQ4 Cluster: Hemin-binding protein; n=1; uncultured
murine large bowel bacterium BAC 54B|Rep: Hemin-binding
protein - uncultured murine large bowel bacterium BAC
54B
Length = 600
Score = 31.9 bits (69), Expect = 9.2
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -2
Query: 292 VARILSAGSGRSLYRLSSVLDST--AFGELVKTGPDRIFGLSSIL 164
VA I+ AG+G+ Y ++L +T A+GE V GPDR F L + L
Sbjct: 443 VAAIMQAGAGKD-YIHHNMLRATGAAWGEAVAIGPDRSFSLKAQL 486
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,673,990
Number of Sequences: 1657284
Number of extensions: 11850736
Number of successful extensions: 29961
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 29144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29955
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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