Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b03f
(609 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 332 5e-90
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 177 2e-43
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 154 2e-36
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 145 8e-34
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 136 4e-31
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 122 7e-27
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 111 1e-23
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 103 3e-21
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 101 1e-20
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 96 5e-19
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 90 4e-17
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 90 4e-17
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 88 2e-16
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 86 5e-16
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 85 9e-16
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 85 9e-16
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 77 3e-13
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 76 6e-13
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 73 4e-12
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 72 9e-12
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 71 2e-11
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 68 2e-10
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 62 1e-08
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 58 2e-07
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 55 2e-06
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 49 1e-04
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 48 1e-04
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 44 0.003
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 41 0.026
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 40 0.035
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.046
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.061
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 38 0.14
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 36 0.75
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 3.0
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 3.0
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 4.0
UniRef50_Q7UL14 Cluster: Putative uncharacterized protein; n=2; ... 33 7.0
UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep... 33 7.0
UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=... 33 7.0
UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1; ... 32 9.3
UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwell... 32 9.3
UniRef50_Q0D9G3 Cluster: Os06g0717700 protein; n=1; Oryza sativa... 32 9.3
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 332 bits (815), Expect = 5e-90
Identities = 159/170 (93%), Positives = 159/170 (93%)
Frame = +3
Query: 99 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 278
STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGT
Sbjct: 25 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGT 84
Query: 279 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 458
RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG
Sbjct: 85 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 144
Query: 459 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY
Sbjct: 145 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 194
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 177 bits (431), Expect = 2e-43
Identities = 88/168 (52%), Positives = 112/168 (66%)
Frame = +3
Query: 105 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 284
K P N L G++R+SK++M+ ++A Y+ VK+IGG KNGG RT
Sbjct: 19 KHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERT 78
Query: 285 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 464
V LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL+ +L
Sbjct: 79 VFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVL 138
Query: 465 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
SGLLLVTGPFA NSCPLRR+ QRYVIGTS+++ LG FK+P+H ND Y
Sbjct: 139 ASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAY 186
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 154 bits (373), Expect = 2e-36
Identities = 79/171 (46%), Positives = 105/171 (61%), Gaps = 6/171 (3%)
Frame = +3
Query: 114 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTR 281
RN L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 282 TVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 455
V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRVV +
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
Query: 456 GILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
L SGLLLVTGP N PLRR Q++VI TST+I + N K+PKH D Y
Sbjct: 166 KQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAY 216
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 145 bits (351), Expect = 8e-34
Identities = 76/168 (45%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Frame = +3
Query: 111 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVP 290
P+N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R +P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
Query: 291 LKRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 464
LK+ + YPT++ + + +S +P S+ +R + GTV ILLAG H GKRVV + L
Sbjct: 85 LKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQL 144
Query: 465 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
+GLL VTGP+ N CPLRRI Q YVI TST++ L KLP+ +D Y
Sbjct: 145 KTGLLPVTGPYGVNGCPLRRINQIYVIATSTKLDLSKVKLPEGLDDRY 192
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 136 bits (329), Expect = 4e-31
Identities = 76/165 (46%), Positives = 100/165 (60%), Gaps = 1/165 (0%)
Frame = +3
Query: 114 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 293
RN +L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP+
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 294 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 473
+R +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV + L SG
Sbjct: 70 QRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVFLKQLNSG 127
Query: 474 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDD 605
LLLVTGPF N PLRRIPQ YVI TST I + + KLP+H F D+
Sbjct: 128 LLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADE 172
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 122 bits (294), Expect = 7e-27
Identities = 61/124 (49%), Positives = 82/124 (66%)
Frame = +3
Query: 237 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 416
V+ K+IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 417 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 596
LAG + GKRVVL+ L SGLLLV+GP N PLRR+ Q+ VI TSTRI + N K+P+H
Sbjct: 104 LAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDISNVKVPEHI 163
Query: 597 NDDY 608
ND Y
Sbjct: 164 NDTY 167
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 111 bits (267), Expect = 1e-23
Identities = 58/110 (52%), Positives = 73/110 (66%), Gaps = 3/110 (2%)
Frame = +3
Query: 288 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 458
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 459 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
L SGLLLVTGPF +N PLRR+ Q YVI TSTRI + F +PKH +D+Y
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQCYVIATSTRIDISKFDVPKHIDDEY 163
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 103 bits (248), Expect = 3e-21
Identities = 49/84 (58%), Positives = 59/84 (70%)
Frame = +3
Query: 357 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 536
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 537 YVIGTSTRISLGNFKLPKHFNDDY 608
YVI T TRI + N K+P ND++
Sbjct: 146 YVIATKTRIKIKNIKIPSQLNDEF 169
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 101 bits (243), Expect = 1e-20
Identities = 54/120 (45%), Positives = 72/120 (60%)
Frame = +3
Query: 231 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVC 410
+ ++ K IGG KNGG R VP K+ +YP +K + K + +RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIV 78
Query: 411 ILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPK 590
ILLAG G RVV++ L SG LLVTGP+A N PL R+ QRYVI TST I + + K
Sbjct: 79 ILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKVDVKK 138
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 96.3 bits (229), Expect = 5e-19
Identities = 62/170 (36%), Positives = 90/170 (52%)
Frame = +3
Query: 99 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 278
+ K RN DL GV ++S+S+M+HK+ + + V
Sbjct: 7 TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV------------ 54
Query: 279 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 458
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 -DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111
Query: 459 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
L SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D Y
Sbjct: 112 QLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKY 160
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 89.8 bits (213), Expect = 4e-17
Identities = 50/112 (44%), Positives = 67/112 (59%)
Frame = +3
Query: 273 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 452
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 453 VGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
+ L SGL+L+TGPF N PLRRI QRYVI TST+I + + K+ ND Y
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAY 163
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 89.8 bits (213), Expect = 4e-17
Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +3
Query: 378 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 554
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 555 TRISLGNFKLPKHFNDDY 608
++++ K+P+H ND+Y
Sbjct: 127 LKVNVSGVKIPEHINDEY 144
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 87.8 bits (208), Expect = 2e-16
Identities = 48/93 (51%), Positives = 61/93 (65%)
Frame = +3
Query: 285 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 464
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 465 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 563
SGLLLVTGPF+FN PLRR+ RYVI TST +
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNSRYVIATSTNV 101
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 86.2 bits (204), Expect = 5e-16
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Frame = +3
Query: 234 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 401
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 402 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 569
T+ ILLAGR GKRV+L+ L G+LLVTGPF N PLRR+ RYVI TS+ + L
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVIATSSTVDL 117
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 85.4 bits (202), Expect = 9e-16
Identities = 48/101 (47%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 309 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 485
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 486 TGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
TGPF N P+RR+ Q YVI TST++ + + K F+D Y
Sbjct: 110 TGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKY 149
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 85.4 bits (202), Expect = 9e-16
Identities = 42/92 (45%), Positives = 60/92 (65%)
Frame = +3
Query: 333 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 512
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 513 PLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
P+RR+ Y+I TST++ + + K F D+Y
Sbjct: 80 PVRRVNPAYIIATSTKVDVSKADVSK-FTDEY 110
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 77.0 bits (181), Expect = 3e-13
Identities = 41/75 (54%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +3
Query: 351 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 524
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 525 IPQRYVIGTSTRISL 569
+ RYVI TS ++ L
Sbjct: 84 VNARYVIATSQKVDL 98
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 76.2 bits (179), Expect = 6e-13
Identities = 43/105 (40%), Positives = 65/105 (61%)
Frame = +3
Query: 294 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 473
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 474 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
LL++GPF N PLRR+ RYVI TST++S+ + K FN +Y
Sbjct: 62 TLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEK-FNVEY 105
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 73.3 bits (172), Expect = 4e-12
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Frame = +3
Query: 240 VVKQIGGEKNGGTRTVPLKRRKSFYPTQEK--IRASSGGRPFS---KHV--RRIRPNLKI 398
VV G +KN V ++K P + K I GR + K V R++R ++++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 399 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 563
G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+ RY+I TST I
Sbjct: 77 GKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 72.1 bits (169), Expect = 9e-12
Identities = 43/93 (46%), Positives = 54/93 (58%)
Frame = +3
Query: 330 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 509
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 510 CPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
PL+R+ YVI TST++ + NDDY
Sbjct: 98 VPLKRVNSAYVIPTSTKVDVTGVN-ANQINDDY 129
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 70.9 bits (166), Expect = 2e-11
Identities = 36/67 (53%), Positives = 42/67 (62%)
Frame = +3
Query: 402 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFK 581
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q VI T T++ + K
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDICKVK 72
Query: 582 LPKHFND 602
KH D
Sbjct: 73 TSKHLTD 79
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 68.1 bits (159), Expect = 2e-10
Identities = 49/151 (32%), Positives = 75/151 (49%)
Frame = +3
Query: 114 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 293
RN L G R+S ++ +K Y + + V+K + G+KNGGT V L
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 294 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 473
++ K + + + + S P KH + + N TV I++ G+H +RVV + L G
Sbjct: 107 QKMKMYLGSCKAMAKS----PAFKHEKAVC-NSTPETVLIIITGQH--RRVVFLKQLSRG 159
Query: 474 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRIS 566
LL+TGP A N L R Q+ V+ TST I+
Sbjct: 160 FLLITGPLALNLVLLYRTHQKSVVITSTTIN 190
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 62.1 bits (144), Expect = 1e-08
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = +3
Query: 378 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 554
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI RYVI TS
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATS 88
Query: 555 TRISLGN 575
T + + +
Sbjct: 89 TTVDISS 95
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 58.0 bits (134), Expect = 2e-07
Identities = 29/57 (50%), Positives = 37/57 (64%)
Frame = +3
Query: 438 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
KRVV + L SGLLL+TG F N PLRR+ Q YVI TST++ + + K F+D Y
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDIPKVNVEK-FDDKY 211
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +3
Query: 381 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTR 560
RP+LK+GTV I++ G H GKR V+V +G++ + GP P+ I Q Y+I TST
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDYLIATSTS 108
Query: 561 ISL 569
I +
Sbjct: 109 IEV 111
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +3
Query: 474 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
L GPF+ N P+RRI Q++V+ TST+I + K+P DDY
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDY 54
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 48.4 bits (110), Expect = 1e-04
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +3
Query: 324 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 503
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 504 NSCPLRRIPQRYVIGTSTRISL 569
N PL RI +RY++ TST + L
Sbjct: 65 NGIPLFRIDERYLLATSTVLDL 86
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 44.0 bits (99), Expect = 0.003
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +3
Query: 387 NLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRIS 566
+ KIG + I+ + GK+ V +G G LL++G FN +I +YV+ + +
Sbjct: 41 DFKIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVVKSGVSLK 100
Query: 567 LGNFKLPKHFNDDY 608
NF L KH N DY
Sbjct: 101 GLNF-LTKHTNKDY 113
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 40.7 bits (91), Expect = 0.026
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +3
Query: 384 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYV 542
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+ +++
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHI 53
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 40.3 bits (90), Expect = 0.035
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Frame = +3
Query: 153 KSKMFHKK---AKYKFIGXXXXXXXXXXXLTVVVKQIG-GEKNGGTRTVPLKRRKSFYPT 320
++ HKK A+ FI L V+ + G K + ++ FYP
Sbjct: 151 RTSTLHKKIASARLDFIKLSGSENELEALLQVLEPSLAKGNKKKKVLSNTEEKLPRFYPA 210
Query: 321 QEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFA 500
+ ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+TG F
Sbjct: 211 DD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLITGSFK 263
Query: 501 FNSCP 515
N P
Sbjct: 264 INDVP 268
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.046
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 381 RPNLKIGTVCILLAGRHAGKRVVLVGILP 467
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.061
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 384 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 527
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 38.3 bits (85), Expect = 0.14
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 390 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 569
+ IG V + + GR AG++ V+V I+ +++TGP RR+ ++ T +I +
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 35.9 bits (79), Expect = 0.75
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +3
Query: 441 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR--YVIGTSTRIS 566
+++++GI+P +L++ F F+S L IPQR +IGT+ I+
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQRKTAIIGTAATIT 258
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 3.0
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 348 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 506
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 3.0
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 264 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 395
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 4.0
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 463 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 329
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_Q7UL14 Cluster: Putative uncharacterized protein; n=2;
Bacteria|Rep: Putative uncharacterized protein -
Rhodopirellula baltica
Length = 84
Score = 32.7 bits (71), Expect = 7.0
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = -2
Query: 200 FANELVFSLLV--EHLGFGETHHSVAQIIVPGFFR----RFFLSHRTCRCGSRLGRRF 45
FA EL FS++ EH+G T + P FR RF + R+CR G+R RRF
Sbjct: 20 FAGEL-FSVIARCEHIGGPNTDVDRRAVFWPKIFRFAAGRFQSTFRSCRVGARYSRRF 76
>UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep:
Gll2249 protein - Gloeobacter violaceus
Length = 544
Score = 32.7 bits (71), Expect = 7.0
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 438 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDD 605
+ +V G + GL+L F S PL Q + +G +T +G LP+HFNDD
Sbjct: 41 QEIVTCGQVLKGLIL--NGLGFVSAPLYLFEQ-FFVGKATEHLIGPGVLPEHFNDD 93
>UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=7;
Pezizomycotina|Rep: Translation factor pelota, putative
- Aspergillus clavatus
Length = 410
Score = 32.7 bits (71), Expect = 7.0
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 280 EQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 381
++Y +V S +TP ++ +P LV VHSAS Y S
Sbjct: 239 QKYIQSVASTTTPALKRLLPSLVVVHSASGYLHS 272
>UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG02414.1 - Gibberella zeae PH-1
Length = 607
Score = 32.3 bits (70), Expect = 9.3
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +3
Query: 291 LKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCI--LLAGRHAGKRVVLVGIL 464
L+ R +F P+Q KI + F++HV R+R NL+I I L+A + GK V+ GIL
Sbjct: 431 LESRDAF-PSQIKIPCKAELASFTRHVERVRKNLEIRVTQIESLIAWLNEGK-VLFDGIL 488
>UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwellia
psychrerythraea 34H|Rep: Putative membrane protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 249
Score = 32.3 bits (70), Expect = 9.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 490 PVTKSRPLGRIPTSTTLLPA-CLP-ARRMQTVPIFRLGRILRTCLL 359
P TK G IP + T P+ C P A R+ V ++ +GRI CL+
Sbjct: 41 PTTKESLQGDIPVNVTSAPSGCSPQASRLNLVFLYHVGRIASYCLI 86
>UniRef50_Q0D9G3 Cluster: Os06g0717700 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os06g0717700 protein -
Oryza sativa subsp. japonica (Rice)
Length = 115
Score = 32.3 bits (70), Expect = 9.3
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 311 LPHSGENPCLIWWPSIQQACTQDPTQPEDRNCLHSPRW*TCRQEGCTCWNSAQRSAFS 484
L H+G++PCLI PS+ T + Q + SP W +C + + ++Q S S
Sbjct: 50 LRHNGQDPCLINQPSMHG--TWNTCQQSGKLLTFSPVWKSCSSKRSQMFQNSQDSVIS 105
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,359,923
Number of Sequences: 1657284
Number of extensions: 12584219
Number of successful extensions: 31630
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 30622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31602
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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