Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0070
(765 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III; n=... 134 3e-30
UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=3... 127 3e-28
UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide ... 102 1e-20
UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein; ... 100 5e-20
UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole... 99 6e-20
UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, wh... 97 4e-19
UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio "Eu... 95 1e-18
UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome s... 95 2e-18
UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1; ... 94 4e-18
UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein; ... 91 3e-17
UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;... 88 3e-16
UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1; ... 85 1e-15
UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4; D... 84 4e-15
UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12; Clost... 83 6e-15
UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole... 82 2e-14
UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1; Metha... 80 5e-14
UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein; ... 80 7e-14
UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 79 9e-14
UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH f... 79 2e-13
UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase pro... 79 2e-13
UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine... 78 3e-13
UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n... 77 4e-13
UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellu... 77 4e-13
UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1; Mycopl... 77 5e-13
UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1; Neptun... 77 5e-13
UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35; ... 76 8e-13
UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2; Salin... 76 8e-13
UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11; Cyano... 76 1e-12
UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;... 76 1e-12
UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor 4... 76 1e-12
UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 75 1e-12
UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A fami... 75 1e-12
UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1; Blasto... 75 3e-12
UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase MJ0... 75 3e-12
UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2; Planct... 74 3e-12
UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18; ... 74 3e-12
UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 74 3e-12
UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 74 3e-12
UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog; ... 74 3e-12
UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1; Mesopl... 74 4e-12
UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 74 4e-12
UniRef50_A0EA02 Cluster: Chromosome undetermined scaffold_85, wh... 74 4e-12
UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 73 6e-12
UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2; Trepon... 73 6e-12
UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein; ... 73 6e-12
UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein; ... 73 6e-12
UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6; Bacter... 73 6e-12
UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102, w... 73 6e-12
UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3; Altero... 73 8e-12
UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28; Alphaproteo... 73 8e-12
UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia psych... 73 8e-12
UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=... 73 8e-12
UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2; s... 73 8e-12
UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6; Prot... 73 1e-11
UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1; Flavob... 73 1e-11
UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=... 73 1e-11
UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3; Thermo... 73 1e-11
UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular organ... 73 1e-11
UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 73 1e-11
UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 72 1e-11
UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15; Cyan... 72 1e-11
UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein; ... 72 1e-11
UniRef50_A6G4U7 Cluster: DEAD/DEAH box helicase; n=2; Plesiocyst... 72 1e-11
UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein; ... 72 1e-11
UniRef50_Q6BFH3 Cluster: Nucleolar RNA helicase II, putative; n=... 72 1e-11
UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10; ... 72 2e-11
UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4; Legion... 72 2e-11
UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6; Xantho... 72 2e-11
UniRef50_A4RW46 Cluster: Predicted protein; n=2; Ostreococcus|Re... 72 2e-11
UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1; ... 72 2e-11
UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9; F... 72 2e-11
UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellu... 71 2e-11
UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4; Clostr... 71 2e-11
UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 71 2e-11
UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=... 71 2e-11
UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3; P... 71 2e-11
UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1; Clost... 71 2e-11
UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein; ... 71 2e-11
UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;... 71 3e-11
UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1; A... 71 3e-11
UniRef50_Q1J0S9 Cluster: DEAD/DEAH box helicase-like protein; n=... 71 3e-11
UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein; ... 71 3e-11
UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein; ... 71 3e-11
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ... 71 3e-11
UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1; Salini... 71 4e-11
UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=... 71 4e-11
UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein; ... 71 4e-11
UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n... 70 6e-11
UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytoph... 70 6e-11
UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellu... 70 6e-11
UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog; ... 70 6e-11
UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1; ... 70 7e-11
UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase, DE... 70 7e-11
UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;... 69 1e-10
UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3; Deltap... 69 1e-10
UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1; Syntro... 69 1e-10
UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein; ... 69 1e-10
UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein; ... 69 1e-10
UniRef50_Q019E9 Cluster: ATP-dependent RNA helicase; n=2; Ostreo... 69 1e-10
UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein; ... 69 1e-10
UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein; ... 69 1e-10
UniRef50_Q6KZC2 Cluster: ATP-dependent RNA helicase; n=1; Picrop... 69 1e-10
UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=... 69 2e-10
UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4; ... 69 2e-10
UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5; T... 68 2e-10
UniRef50_Q2J6D3 Cluster: DEAD/DEAH box helicase-like; n=2; Frank... 68 2e-10
UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 68 2e-10
UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;... 68 2e-10
UniRef50_Q7QA96 Cluster: ENSANGP00000013118; n=5; Eumetazoa|Rep:... 68 2e-10
UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX... 68 2e-10
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 68 3e-10
UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=... 68 3e-10
UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_030017... 67 4e-10
UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=... 67 4e-10
UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 67 4e-10
UniRef50_A1UCR5 Cluster: DEAD/DEAH box helicase domain protein; ... 67 4e-10
UniRef50_Q3EBD3 Cluster: DEAD-box ATP-dependent RNA helicase 41;... 67 4e-10
UniRef50_Q8L7S8 Cluster: DEAD-box ATP-dependent RNA helicase 3; ... 67 4e-10
UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;... 67 4e-10
UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX... 67 4e-10
UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3; F... 67 4e-10
UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellul... 67 5e-10
UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=... 67 5e-10
UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box fa... 67 5e-10
UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1; Pseud... 67 5e-10
UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20; Franc... 67 5e-10
UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2; ... 67 5e-10
UniRef50_Q9N5K1 Cluster: Putative uncharacterized protein; n=2; ... 67 5e-10
UniRef50_Q54CD6 Cluster: Putative uncharacterized protein; n=1; ... 67 5e-10
UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6; H... 66 7e-10
UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=... 66 7e-10
UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein; ... 66 7e-10
UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7; ... 66 7e-10
UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6; ... 66 7e-10
UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54; Ga... 66 7e-10
UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable A... 66 9e-10
UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=... 66 9e-10
UniRef50_Q9S531 Cluster: DEAD-box protein; n=4; Cystobacterineae... 66 9e-10
UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein; ... 66 9e-10
UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=... 66 9e-10
UniRef50_A2EVI2 Cluster: DEAD/DEAH box helicase family protein; ... 66 9e-10
UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family pr... 66 1e-09
UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28; Al... 66 1e-09
UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 66 1e-09
UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=... 66 1e-09
UniRef50_Q4PNH7 Cluster: Putative cold-shock dead-box protein A;... 66 1e-09
UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3; Clostr... 66 1e-09
UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 66 1e-09
UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein; ... 66 1e-09
UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent... 66 1e-09
UniRef50_Q32LU9 Cluster: LOC562123 protein; n=3; Danio rerio|Rep... 65 2e-09
UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=... 65 2e-09
UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE; ... 65 2e-09
UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10; Proteobac... 65 2e-09
UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=... 65 2e-09
UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein; ... 65 2e-09
UniRef50_Q7K4L8 Cluster: LD33749p; n=1; Drosophila melanogaster|... 65 2e-09
UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3; P... 65 2e-09
UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;... 65 2e-09
UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;... 65 2e-09
UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX... 65 2e-09
UniRef50_Q4AEL1 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 65 2e-09
UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4... 65 2e-09
UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein; ... 65 2e-09
UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5; Viridiplanta... 65 2e-09
UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1; ... 65 2e-09
UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA hel... 65 2e-09
UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4; W... 64 3e-09
UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=... 64 3e-09
UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific fo... 64 3e-09
UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=19... 64 3e-09
UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL p... 64 4e-09
UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 64 4e-09
UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila melanogaster... 64 4e-09
UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia... 64 4e-09
UniRef50_Q5BXU1 Cluster: SJCHGC08663 protein; n=1; Schistosoma j... 64 4e-09
UniRef50_Q54T87 Cluster: Putative uncharacterized protein; n=1; ... 64 4e-09
UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma ... 64 4e-09
UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1; E... 64 4e-09
UniRef50_UPI00003937F7 Cluster: COG0513: Superfamily II DNA and ... 64 5e-09
UniRef50_Q8G5U3 Cluster: Possible ATP-dependent RNA helicase; n=... 64 5e-09
UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1; Acido... 64 5e-09
UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;... 64 5e-09
UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n... 64 5e-09
UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55; Eu... 64 5e-09
UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7; A... 64 5e-09
UniRef50_UPI0000E49D13 Cluster: PREDICTED: similar to DEAD (Asp-... 63 6e-09
UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable A... 63 6e-09
UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1; Ent... 63 6e-09
UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box fa... 63 6e-09
UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 63 6e-09
UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=... 63 6e-09
UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein; ... 63 6e-09
UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH bo... 63 6e-09
UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein; ... 63 6e-09
UniRef50_A2WLP5 Cluster: Putative uncharacterized protein; n=3; ... 63 6e-09
UniRef50_Q234J0 Cluster: DEAD/DEAH box helicase family protein; ... 63 6e-09
UniRef50_A7U5W8 Cluster: DEAD-box helicase 5; n=6; Plasmodium|Re... 63 6e-09
UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1; uncult... 63 6e-09
UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhl... 63 6e-09
UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22; ... 63 6e-09
UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;... 63 6e-09
UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;... 63 6e-09
UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1; Ent... 63 8e-09
UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2; Bacill... 63 8e-09
UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2; Synec... 63 8e-09
UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1; Oceano... 63 8e-09
UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA h... 63 8e-09
UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2; Planct... 63 8e-09
UniRef50_Q55RL6 Cluster: Putative uncharacterized protein; n=2; ... 63 8e-09
UniRef50_UPI00006CBDDC Cluster: DEAD/DEAH box helicase family pr... 62 1e-08
UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicas... 62 1e-08
UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein; ... 62 1e-08
UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 62 1e-08
UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1; Planct... 62 1e-08
UniRef50_A4EAF2 Cluster: Putative uncharacterized protein; n=1; ... 62 1e-08
UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2; Alphaproteob... 62 1e-08
UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=... 62 1e-08
UniRef50_Q6NHC6 Cluster: Putative RNA helicase; n=2; Corynebacte... 62 1e-08
UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14; ... 62 1e-08
UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 62 1e-08
UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3; Rhodos... 62 1e-08
UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein; ... 62 1e-08
UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box fa... 62 1e-08
UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein; ... 62 1e-08
UniRef50_Q014T4 Cluster: Chromosome 07 contig 1, DNA sequence; n... 62 1e-08
UniRef50_Q16T16 Cluster: DEAD box ATP-dependent RNA helicase; n=... 62 1e-08
UniRef50_A0C369 Cluster: Chromosome undetermined scaffold_146, w... 62 1e-08
UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18; ... 62 1e-08
UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;... 62 1e-08
UniRef50_Q0E3X4 Cluster: DEAD-box ATP-dependent RNA helicase 35A... 62 1e-08
UniRef50_P20449 Cluster: ATP-dependent RNA helicase DBP5; n=23; ... 62 1e-08
UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n... 62 2e-08
UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2; Desul... 62 2e-08
UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=... 62 2e-08
UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box heli... 62 2e-08
UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein; ... 62 2e-08
UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=... 62 2e-08
UniRef50_Q012T2 Cluster: DEAD-box protein abstrakt; n=3; Ostreoc... 62 2e-08
UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Re... 62 2e-08
UniRef50_A7RGX3 Cluster: Predicted protein; n=3; Eukaryota|Rep: ... 62 2e-08
UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3; Methanosarc... 62 2e-08
UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82; E... 62 2e-08
UniRef50_Q4P9E5 Cluster: ATP-dependent rRNA helicase SPB4; n=2; ... 62 2e-08
UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX... 62 2e-08
UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20; ... 62 2e-08
UniRef50_UPI00015609AE Cluster: PREDICTED: similar to DEAD (Asp-... 61 3e-08
UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59; ... 61 3e-08
UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase... 61 3e-08
UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=... 61 3e-08
UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase Rhl... 61 3e-08
UniRef50_A5KB15 Cluster: ATP-dependent RNA helicase, putative; n... 61 3e-08
UniRef50_Q9LU46 Cluster: DEAD-box ATP-dependent RNA helicase 35;... 61 3e-08
UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4; Pr... 61 3e-08
UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 61 3e-08
UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box RN... 61 3e-08
UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box fa... 61 3e-08
UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DE... 61 3e-08
UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 61 3e-08
UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein; ... 61 3e-08
UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein; ... 61 3e-08
UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3; P... 61 3e-08
UniRef50_Q9C551 Cluster: DEAD-box ATP-dependent RNA helicase 5; ... 61 3e-08
UniRef50_UPI00004988F8 Cluster: DEAD/DEAH box helicase; n=1; Ent... 60 4e-08
UniRef50_Q5VQL1-2 Cluster: Isoform 2 of Q5VQL1 ; n=2; Magnolioph... 60 4e-08
UniRef50_Q0S0C7 Cluster: ATP-dependent RNA helicase; n=5; Actino... 60 4e-08
UniRef50_Q03YT1 Cluster: Superfamily II DNA and RNA helicase; n=... 60 4e-08
UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1; ... 60 4e-08
UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein; ... 60 4e-08
UniRef50_Q54CB8 Cluster: Putative uncharacterized protein; n=1; ... 60 4e-08
UniRef50_Q4Z5Q6 Cluster: ATP-dependent RNA helicase, putative; n... 60 4e-08
UniRef50_A0BDD2 Cluster: Chromosome undetermined scaffold_100, w... 60 4e-08
UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3; Thermopro... 60 4e-08
UniRef50_Q10RI7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 60 4e-08
UniRef50_Q9V3C0 Cluster: ATP-dependent RNA helicase abstrakt; n=... 60 4e-08
UniRef50_UPI00005A557C Cluster: PREDICTED: similar to eukaryotic... 60 6e-08
UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=... 60 6e-08
UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila melanogaster|... 60 6e-08
UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2; Cryptospori... 60 6e-08
UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subuni... 60 6e-08
UniRef50_Q1JSQ3 Cluster: Dead-box helicase, putative; n=1; Toxop... 60 6e-08
UniRef50_Q16XX4 Cluster: DEAD box ATP-dependent RNA helicase; n=... 60 6e-08
UniRef50_Q9FLB0 Cluster: DEAD-box ATP-dependent RNA helicase 18;... 60 6e-08
UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 60 6e-08
UniRef50_Q6FM43 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 60 6e-08
UniRef50_UPI00015B4D1B Cluster: PREDICTED: similar to DEAD box A... 60 8e-08
UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10; ... 60 8e-08
UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducibl... 60 8e-08
UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 60 8e-08
UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5; Clost... 60 8e-08
UniRef50_A3AD37 Cluster: Putative uncharacterized protein; n=2; ... 60 8e-08
UniRef50_Q8I416 Cluster: ATP-dependent RNA helicase, putative; n... 60 8e-08
UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyosteli... 60 8e-08
UniRef50_Q4QIQ9 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 60 8e-08
UniRef50_A2ED04 Cluster: DEAD/DEAH box helicase family protein; ... 60 8e-08
UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG4... 60 8e-08
UniRef50_Q39189 Cluster: DEAD-box ATP-dependent RNA helicase 7; ... 60 8e-08
UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2; Strept... 59 1e-07
UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1; Idioma... 59 1e-07
UniRef50_Q30P62 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 59 1e-07
UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein; ... 59 1e-07
UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein; ... 59 1e-07
UniRef50_Q00VZ7 Cluster: DEAD/DEAH box helicase, putative; n=2; ... 59 1e-07
UniRef50_A4S3A0 Cluster: Predicted protein; n=2; Ostreococcus|Re... 59 1e-07
UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia A... 59 1e-07
UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila pseudoobscu... 59 1e-07
UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 59 1e-07
UniRef50_A2DH37 Cluster: DEAD/DEAH box helicase family protein; ... 59 1e-07
UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqf... 59 1e-07
UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;... 59 1e-07
UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA hel... 59 1e-07
UniRef50_UPI0000DAE40A Cluster: hypothetical protein Rgryl_01000... 59 1e-07
UniRef50_UPI00006CDDA3 Cluster: CLN3 protein; n=1; Tetrahymena t... 59 1e-07
UniRef50_Q4SJI2 Cluster: Chromosome 4 SCAF14575, whole genome sh... 59 1e-07
UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 59 1e-07
UniRef50_Q6KI10 Cluster: DEAD-box ATP-dependent RNA helicase; n=... 59 1e-07
UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1; Glucon... 59 1e-07
UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1; ... 59 1e-07
UniRef50_Q1GJ43 Cluster: DEAD/DEAH box helicase-like protein; n=... 59 1e-07
UniRef50_Q0S0C5 Cluster: Possible ATP-dependent RNA helicase; n=... 59 1e-07
UniRef50_A3WBM2 Cluster: Cold-shock dead-box protein A; n=1; Ery... 59 1e-07
UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein; ... 59 1e-07
UniRef50_Q8SY39 Cluster: LD28101p; n=3; Diptera|Rep: LD28101p - ... 59 1e-07
UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3; ... 59 1e-07
UniRef50_Q4N215 Cluster: RNA helicase, putative; n=3; Aconoidasi... 59 1e-07
UniRef50_Q4MYL1 Cluster: ATP-dependent RNA helicase, putative; n... 59 1e-07
UniRef50_Q23WN3 Cluster: Helicase conserved C-terminal domain co... 59 1e-07
UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 59 1e-07
UniRef50_A6SDG8 Cluster: Putative uncharacterized protein; n=1; ... 59 1e-07
UniRef50_Q8SR49 Cluster: ATP-dependent rRNA helicase SPB4; n=1; ... 59 1e-07
UniRef50_Q10202 Cluster: ATP-dependent RNA helicase dbp3; n=1; S... 59 1e-07
UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|R... 58 2e-07
UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 58 2e-07
UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1; Thiomi... 58 2e-07
UniRef50_O54116 Cluster: Probable DEAD-box RNA helicase; n=10; S... 58 2e-07
UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=... 58 2e-07
UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinek... 58 2e-07
UniRef50_Q4Y0X7 Cluster: DEAD-box RNA helicase, putative; n=2; P... 58 2e-07
UniRef50_Q4UDY7 Cluster: RNA helicase, putative; n=2; Theileria|... 58 2e-07
UniRef50_A0D361 Cluster: Chromosome undetermined scaffold_36, wh... 58 2e-07
UniRef50_A7ETZ1 Cluster: Putative uncharacterized protein; n=1; ... 58 2e-07
UniRef50_P19109 Cluster: ATP-dependent RNA helicase p62; n=9; Eu... 58 2e-07
UniRef50_Q93ZG7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 58 2e-07
UniRef50_Q4IF76 Cluster: ATP-dependent RNA helicase DBP2; n=4; F... 58 2e-07
UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p; ... 58 2e-07
UniRef50_UPI0000F2BC8C Cluster: PREDICTED: similar to eukaryotic... 58 2e-07
UniRef50_Q89M45 Cluster: ATP-dependent RNA helicase; n=29; cellu... 58 2e-07
UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 58 2e-07
UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellu... 58 2e-07
UniRef50_Q5FLW7 Cluster: RNA helicase; n=9; Lactobacillus|Rep: R... 58 2e-07
UniRef50_Q2BIX8 Cluster: Probable ATP-dependent RNA helicase; n=... 58 2e-07
UniRef50_Q11UI8 Cluster: DEAD box-related helicase; n=3; Sphingo... 58 2e-07
UniRef50_A4AFV6 Cluster: ATP-dependent RNA helicase; n=3; Actino... 58 2e-07
UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=... 58 2e-07
UniRef50_Q58HG3 Cluster: DEAD-box RNA helicase; n=4; Eukaryota|R... 58 2e-07
UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1; ... 58 2e-07
UniRef50_Q4W7T7 Cluster: VASA RNA helicase; n=3; Daphniidae|Rep:... 58 2e-07
UniRef50_Q388E8 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 58 2e-07
UniRef50_Q17KA8 Cluster: DEAD box ATP-dependent RNA helicase; n=... 58 2e-07
UniRef50_Q17II7 Cluster: DEAD box ATP-dependent RNA helicase; n=... 58 2e-07
UniRef50_A0C321 Cluster: Chromosome undetermined scaffold_146, w... 58 2e-07
UniRef50_A4RHM4 Cluster: Putative uncharacterized protein; n=1; ... 58 2e-07
UniRef50_A3BT52 Cluster: DEAD-box ATP-dependent RNA helicase 29;... 58 2e-07
UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 58 2e-07
UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;... 58 2e-07
UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13; Prot... 58 3e-07
UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein; ... 58 3e-07
UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=... 58 3e-07
UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7; Trypanosom... 58 3e-07
UniRef50_O97031 Cluster: DjVLGA; n=1; Dugesia japonica|Rep: DjVL... 58 3e-07
UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase... 58 3e-07
UniRef50_Q5JKF2 Cluster: DEAD-box ATP-dependent RNA helicase 40;... 58 3e-07
UniRef50_Q4P9P3 Cluster: ATP-dependent RNA helicase DRS1; n=1; U... 58 3e-07
UniRef50_P24784 Cluster: ATP-dependent RNA helicase DBP1; n=103;... 58 3e-07
UniRef50_UPI0000E87E35 Cluster: putative ATP-dependent RNA helic... 57 4e-07
UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;... 57 4e-07
UniRef50_Q9RXH8 Cluster: ATP-dependent RNA helicase, putative; n... 57 4e-07
UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 57 4e-07
UniRef50_Q62J95 Cluster: ATP-dependent RNA helicase RhlE, putati... 57 4e-07
UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 57 4e-07
UniRef50_Q2BGG8 Cluster: RNA helicase DbpA; n=1; Neptuniibacter ... 57 4e-07
UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|R... 57 4e-07
UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box fa... 57 4e-07
UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=... 57 4e-07
UniRef50_Q54CH6 Cluster: Putative uncharacterized protein; n=1; ... 57 4e-07
UniRef50_A7APE7 Cluster: DEAD/DEAH box helicase domain containin... 57 4e-07
UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein; ... 57 4e-07
UniRef50_Q5BF42 Cluster: Putative uncharacterized protein; n=1; ... 57 4e-07
UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1; ... 57 4e-07
UniRef50_Q4WRP2 Cluster: ATP-dependent RNA helicase mss116, mito... 57 4e-07
UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13; ... 57 4e-07
UniRef50_Q9NXZ2 Cluster: Probable ATP-dependent RNA helicase DDX... 57 4e-07
UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX... 57 4e-07
UniRef50_Q9NR30 Cluster: Nucleolar RNA helicase 2; n=51; Euteleo... 57 4e-07
UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2; F... 57 4e-07
UniRef50_A4R5B8 Cluster: ATP-dependent RNA helicase DBP10; n=2; ... 57 4e-07
UniRef50_UPI0000DB7667 Cluster: PREDICTED: similar to CG32344-PA... 57 6e-07
UniRef50_Q9KKW0 Cluster: ATP-dependent RNA helicase, DEAD box fa... 57 6e-07
UniRef50_Q6A6U7 Cluster: ATP-dependent RNA helicase; n=3; Actino... 57 6e-07
UniRef50_Q9GV13 Cluster: Vasa-related protein CnVAS1; n=3; Eumet... 57 6e-07
UniRef50_Q7QDB7 Cluster: ENSANGP00000017541; n=1; Anopheles gamb... 57 6e-07
UniRef50_Q5CHB7 Cluster: Putative uncharacterized protein; n=2; ... 57 6e-07
UniRef50_Q4W7T8 Cluster: VASA RNA helicase; n=1; Artemia francis... 57 6e-07
UniRef50_Q4N4Z2 Cluster: ATP-dependent RNA helicase, putative; n... 57 6e-07
UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46... 57 6e-07
UniRef50_A2D7F9 Cluster: DEAD/DEAH box helicase family protein; ... 57 6e-07
UniRef50_A1IIT5 Cluster: RNA helicase; n=1; Neobenedenia girella... 57 6e-07
UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62; ... 57 6e-07
UniRef50_UPI0000F1F65D Cluster: PREDICTED: hypothetical protein;... 56 7e-07
UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD (Asp-... 56 7e-07
UniRef50_UPI00006CD03A Cluster: P68-like protein, putative; n=1;... 56 7e-07
UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2; Glucon... 56 7e-07
UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12; Alpha... 56 7e-07
UniRef50_A3J7I3 Cluster: ATP-independent RNA helicase; n=5; Bact... 56 7e-07
UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n... 56 7e-07
UniRef50_Q2H0K3 Cluster: Putative uncharacterized protein; n=1; ... 56 7e-07
UniRef50_A4QQK0 Cluster: Putative uncharacterized protein; n=3; ... 56 7e-07
UniRef50_Q6K7R9 Cluster: DEAD-box ATP-dependent RNA helicase 48;... 56 7e-07
UniRef50_Q9SQV1 Cluster: Probable DEAD-box ATP-dependent RNA hel... 56 7e-07
UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;... 56 7e-07
UniRef50_Q5KIK3 Cluster: ATP-dependent RNA helicase DRS1; n=1; F... 56 7e-07
UniRef50_Q8TDD1 Cluster: ATP-dependent RNA helicase DDX54; n=45;... 56 7e-07
UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13; ... 56 7e-07
UniRef50_UPI00006CF9CE Cluster: DEAD/DEAH box helicase family pr... 56 1e-06
UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3; Sphingomonad... 56 1e-06
UniRef50_A6DHU9 Cluster: DEAD/DEAH box helicase-like protein; n=... 56 1e-06
UniRef50_Q9N478 Cluster: Putative uncharacterized protein; n=2; ... 56 1e-06
UniRef50_Q7QQ49 Cluster: GLP_139_12217_14094; n=1; Giardia lambl... 56 1e-06
UniRef50_Q7QNT5 Cluster: GLP_88_2286_3572; n=1; Giardia lamblia ... 56 1e-06
UniRef50_Q38DS7 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 56 1e-06
UniRef50_A7RY08 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 56 1e-06
UniRef50_A7ARY5 Cluster: DEAD/DEAH box helicase protein family; ... 56 1e-06
UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 56 1e-06
UniRef50_Q2H0R2 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 56 1e-06
UniRef50_UPI00004994C0 Cluster: DEAD/DEAH box helicase; n=2; Ent... 56 1e-06
UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA he... 56 1e-06
UniRef50_A6GSW1 Cluster: Putative ATP-dependent RNA helicase; n=... 56 1e-06
UniRef50_A1USG3 Cluster: DEAD/DEAH box helicase domain/helicase ... 56 1e-06
UniRef50_Q7QTB2 Cluster: GLP_15_13424_14974; n=2; Giardia intest... 56 1e-06
UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n... 56 1e-06
UniRef50_Q238V7 Cluster: Type III restriction enzyme, res subuni... 56 1e-06
UniRef50_A7AWJ7 Cluster: DEAD/DEAH box helicase and helicase con... 56 1e-06
UniRef50_A2DB16 Cluster: DEAD/DEAH box helicase family protein; ... 56 1e-06
UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, wh... 56 1e-06
UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 varia... 56 1e-06
UniRef50_Q4IP34 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 56 1e-06
UniRef50_Q26696 Cluster: Putative DEAD-box RNA helicase HEL64; n... 56 1e-06
UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX... 56 1e-06
UniRef50_Q5BFU7 Cluster: ATP-dependent RNA helicase dbp10; n=14;... 56 1e-06
UniRef50_A4C6L9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 55 2e-06
UniRef50_A3JG19 Cluster: ATP-dependent RNA helicase; n=1; Marino... 55 2e-06
UniRef50_A5B712 Cluster: Putative uncharacterized protein; n=1; ... 55 2e-06
UniRef50_Q9GNP1 Cluster: Vasa homolog; n=18; Eumetazoa|Rep: Vasa... 55 2e-06
UniRef50_Q61AN8 Cluster: Putative uncharacterized protein CBG136... 55 2e-06
UniRef50_A7RHS2 Cluster: Predicted protein; n=1; Nematostella ve... 55 2e-06
UniRef50_A2DES1 Cluster: DEAD/DEAH box helicase family protein; ... 55 2e-06
UniRef50_Q53FI9 Cluster: Nucleolar protein GU2 variant; n=3; Eut... 55 2e-06
UniRef50_A6QYH1 Cluster: 2-isopropylmalate synthase; n=4; Ascomy... 55 2e-06
UniRef50_Q9Y7T7 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 55 2e-06
UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1; S... 55 2e-06
UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2; C... 55 2e-06
UniRef50_Q86XP3 Cluster: ATP-dependent RNA helicase DDX42; n=47;... 55 2e-06
UniRef50_Q9UHL0 Cluster: ATP-dependent RNA helicase DDX25; n=111... 55 2e-06
UniRef50_Q7RYZ7 Cluster: ATP-dependent RNA helicase dbp-8; n=15;... 55 2e-06
UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase; ... 55 2e-06
UniRef50_Q0HLM7 Cluster: DEAD/DEAH box helicase domain protein; ... 55 2e-06
UniRef50_Q014Y7 Cluster: RNA helicase-like protein; n=2; Ostreoc... 55 2e-06
UniRef50_A4S461 Cluster: Predicted protein; n=1; Ostreococcus lu... 55 2e-06
UniRef50_A2YDM1 Cluster: Putative uncharacterized protein; n=2; ... 55 2e-06
UniRef50_Q9GV12 Cluster: Vasa-related protein CnVAS2; n=14; Eume... 55 2e-06
UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1; C... 55 2e-06
UniRef50_Q8SSG7 Cluster: PUTATIVE ATP-DEPENDENT RNA HELICASE; n=... 55 2e-06
UniRef50_Q8NJW1 Cluster: CYT-19 DEAD-box protein precursor; n=1;... 55 2e-06
UniRef50_Q1E273 Cluster: Putative uncharacterized protein; n=2; ... 55 2e-06
UniRef50_A7TJK8 Cluster: Putative uncharacterized protein; n=1; ... 55 2e-06
UniRef50_Q9FVV4 Cluster: Putative DEAD-box ATP-dependent RNA hel... 55 2e-06
UniRef50_P23394 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 55 2e-06
UniRef50_Q06218 Cluster: ATP-dependent RNA helicase DBP9; n=4; A... 55 2e-06
UniRef50_Q9DF36 Cluster: RNA helicase II/Gu; n=9; Tetrapoda|Rep:... 54 3e-06
UniRef50_Q6MHS8 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 54 3e-06
UniRef50_Q3SF48 Cluster: DEAD/DEAH box helicase; n=6; cellular o... 54 3e-06
UniRef50_A6W6A7 Cluster: DEAD/DEAH box helicase domain protein; ... 54 3e-06
UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein; ... 54 3e-06
UniRef50_A0LLL9 Cluster: DEAD/DEAH box helicase domain protein; ... 54 3e-06
UniRef50_Q95QN2 Cluster: Putative uncharacterized protein; n=2; ... 54 3e-06
UniRef50_Q5D9C4 Cluster: SJCHGC09528 protein; n=1; Schistosoma j... 54 3e-06
UniRef50_Q2PZC2 Cluster: Vasa protein; n=3; Apidae|Rep: Vasa pro... 54 3e-06
UniRef50_A4IBK1 Cluster: ATP-dependent RNA helicase, putative; n... 54 3e-06
UniRef50_A2EAD4 Cluster: DEAD/DEAH box helicase family protein; ... 54 3e-06
UniRef50_A0CUN8 Cluster: Chromosome undetermined scaffold_28, wh... 54 3e-06
UniRef50_A0BDT5 Cluster: Chromosome undetermined scaffold_101, w... 54 3e-06
UniRef50_Q9C8S9 Cluster: Probable DEAD-box ATP-dependent RNA hel... 54 3e-06
UniRef50_Q754U8 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 54 3e-06
UniRef50_Q6BLU9 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 54 3e-06
UniRef50_Q5KNF8 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 54 3e-06
UniRef50_Q4PDT1 Cluster: ATP-dependent RNA helicase DBP3; n=1; U... 54 3e-06
UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2; ... 54 3e-06
UniRef50_Q2J919 Cluster: Helicase-like; n=3; Frankia|Rep: Helica... 54 4e-06
UniRef50_Q1LSH5 Cluster: DEAD/DEAH box helicase-like protein pre... 54 4e-06
UniRef50_A6VWX2 Cluster: DEAD/DEAH box helicase domain protein; ... 54 4e-06
>UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III;
n=366; root|Rep: Eukaryotic initiation factor 4A-III -
Homo sapiens (Human)
Length = 411
Score = 134 bits (323), Expect = 3e-30
Identities = 63/84 (75%), Positives = 74/84 (88%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RDVIAQ+QSGTGKTATFSIS+LQ +D +RE QALILAPTRELA QIQK ++ALGD++N
Sbjct: 76 RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 135
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+CHACIGGTNV EDIR+L+ G HV
Sbjct: 136 QCHACIGGTNVGEDIRKLDYGQHV 159
Score = 102 bits (244), Expect = 1e-20
Identities = 44/76 (57%), Positives = 61/76 (80%)
Frame = +1
Query: 514 GTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATM 693
GTPGRV+DMI RR+L IK+ VLDEADEML++GFK+QI+DV++ L QV+L+SAT+
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 221
Query: 694 PDDVLEVSRCFMRDPV 741
P ++LE++ FM DP+
Sbjct: 222 PHEILEMTNKFMTDPI 237
Score = 62.1 bits (144), Expect = 1e-08
Identities = 29/39 (74%), Positives = 32/39 (82%)
Frame = +3
Query: 138 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
V TFD M L+E+LLRGIYAYGFEKPSAIQQRAI I+
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK 74
>UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=37;
Bilateria|Rep: Eukaryotic initiation factor 4A-II - Homo
sapiens (Human)
Length = 407
Score = 127 bits (306), Expect = 3e-28
Identities = 57/79 (72%), Positives = 72/79 (91%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
DVIAQAQSGTGKTATF+ISILQQ++ +E QAL+LAPTRELAQQIQKV++ALGD++ A
Sbjct: 72 DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGAT 131
Query: 440 CHACIGGTNVREDIRQLES 496
CHACIGGTNVR ++++L++
Sbjct: 132 CHACIGGTNVRNEMQKLQA 150
Score = 117 bits (282), Expect = 3e-25
Identities = 53/77 (68%), Positives = 66/77 (85%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV+DM+ RR L IK+FVLDEADEMLSRGFKDQI+++F+ L+ +QV+LLSAT
Sbjct: 157 VGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 216
Query: 691 MPDDVLEVSRCFMRDPV 741
MP DVLEV++ FMRDP+
Sbjct: 217 MPTDVLEVTKKFMRDPI 233
Score = 97.9 bits (233), Expect = 2e-19
Identities = 44/68 (64%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
Frame = +3
Query: 57 NGPSKDQG-SYDGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQ 230
+G S D + GP GMDP G ++++W+++V+ FDDMNLKE LLRGIYAYGFEKPSAIQQ
Sbjct: 2 SGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQ 61
Query: 231 RAIMPCIQ 254
RAI+PCI+
Sbjct: 62 RAIIPCIK 69
>UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide 48;
n=5; Fungi/Metazoa group|Rep: DEAD (Asp-Glu-Ala-Asp) box
polypeptide 48 - Mus musculus (Mouse)
Length = 299
Score = 102 bits (244), Expect = 1e-20
Identities = 44/76 (57%), Positives = 61/76 (80%)
Frame = +1
Query: 514 GTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATM 693
GTPGRV+DMI RR+L IK+ VLDEADEML++GFK+QI+DV++ L QV+L+SAT+
Sbjct: 141 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 200
Query: 694 PDDVLEVSRCFMRDPV 741
P ++LE++ FM DP+
Sbjct: 201 PHEILEMTNKFMTDPI 216
Score = 80.2 bits (189), Expect = 5e-14
Identities = 46/84 (54%), Positives = 56/84 (66%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RDVIAQ+QSGTGKTATFS+S+LQ +D Q L+ ALGD++N
Sbjct: 76 RDVIAQSQSGTGKTATFSVSVLQCLDI-----QGLL----------------ALGDYMNV 114
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+CHACIGGTNV EDIR+L+ G HV
Sbjct: 115 QCHACIGGTNVGEDIRKLDYGQHV 138
Score = 62.1 bits (144), Expect = 1e-08
Identities = 29/39 (74%), Positives = 32/39 (82%)
Frame = +3
Query: 138 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
V TFD M L+E+LLRGIYAYGFEKPSAIQQRAI I+
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK 74
>UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 475
Score = 100 bits (239), Expect = 5e-20
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D+I ++ L + +KLF+LDEADEML RGFKDQI+ +F+ L D+QV L SAT
Sbjct: 224 VGTPGRVLDLIQKKTLVTDHLKLFILDEADEMLGRGFKDQINKIFQNLPHDIQVALFSAT 283
Query: 691 MPDDVLEVSRCFMRDP 738
M ++LE+++ FMRDP
Sbjct: 284 MAPEILEITKQFMRDP 299
Score = 75.4 bits (177), Expect = 1e-12
Identities = 41/59 (69%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ-IQKVVIALGDHL 430
+D IAQAQSGTGKTATFSI+ LQ IDTS QALILAPTRELAQQ I ++ LG +L
Sbjct: 72 KDTIAQAQSGTGKTATFSIATLQVIDTSSPHTQALILAPTRELAQQTITRIFFILGVNL 130
Score = 39.5 bits (88), Expect = 0.089
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 398 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+KV++ LG+ L +AC GGT+ +ED ++L GV V
Sbjct: 186 KKVIMYLGEFLKVSAYACTGGTDPKEDRKRLREGVQV 222
>UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole
genome shotgun sequence; n=2; Euteleostomi|Rep:
Chromosome undetermined SCAF9757, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 99 bits (238), Expect = 6e-20
Identities = 43/57 (75%), Positives = 51/57 (89%), Gaps = 1/57 (1%)
Frame = +3
Query: 87 DGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
+GP GMDP G ++T+WD VV+ FDDMNLKE LLRG+YAYGFEKPSAIQQRAI+PCI+
Sbjct: 10 NGPEGMDPDGVIETNWDTVVDNFDDMNLKESLLRGVYAYGFEKPSAIQQRAILPCIK 66
Score = 81.0 bits (191), Expect = 3e-14
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 406
DVIAQAQSGTGKTATF ISILQ+IDTS++E QALILAPTRELAQQ K+
Sbjct: 69 DVIAQAQSGTGKTATFVISILQRIDTSLKETQALILAPTRELAQQEWKL 117
>UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 434
Score = 97.1 bits (231), Expect = 4e-19
Identities = 45/84 (53%), Positives = 61/84 (72%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+DV+AQAQSGTGKT TF+I LQ+ID + R+ Q +ILAP RELA+QI VV +G +LN
Sbjct: 94 KDVLAQAQSGTGKTGTFTIGALQRIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYLNI 153
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ CIGGT+ +E + + GVH+
Sbjct: 154 EAFCCIGGTSTQETREKCKQGVHI 177
Score = 81.8 bits (193), Expect = 2e-14
Identities = 33/75 (44%), Positives = 53/75 (70%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ DM+ + L A ++L V+DEAD+ML +GF D ++ KM+ D+Q+ L SAT
Sbjct: 179 IATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIALFSAT 238
Query: 691 MPDDVLEVSRCFMRD 735
P +++E+S+ F+RD
Sbjct: 239 FPQEIIELSKQFLRD 253
Score = 64.5 bits (150), Expect = 3e-09
Identities = 27/45 (60%), Positives = 37/45 (82%)
Frame = +3
Query: 117 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 251
L +W + VETF+D+ L ++LLRGI++YGFE+PSAIQQ+AI P I
Sbjct: 47 LQENWIEQVETFEDLTLSKDLLRGIFSYGFERPSAIQQKAIKPII 91
>UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio
"Eukaryotic translation initiation factor 4A, isoform
1A.; n=1; Takifugu rubripes|Rep: Homolog of Brachydanio
rerio "Eukaryotic translation initiation factor 4A,
isoform 1A. - Takifugu rubripes
Length = 357
Score = 95.5 bits (227), Expect = 1e-18
Identities = 44/72 (61%), Positives = 56/72 (77%)
Frame = +1
Query: 526 RVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 705
RV+D++ RRA+ A I+L VLDEAD+ML GFKDQIH++F L +VQ ILLSATMP V
Sbjct: 112 RVFDVLARRAVSAKAIRLLVLDEADQMLGNGFKDQIHEIFCKLPTNVQAILLSATMPAHV 171
Query: 706 LEVSRCFMRDPV 741
LE ++ FM+DPV
Sbjct: 172 LEATKMFMQDPV 183
Score = 73.7 bits (173), Expect = 4e-12
Identities = 36/52 (69%), Positives = 44/52 (84%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA 415
DVIAQ+QSGTGKTAT+ I+ LQ+ID + QA+ILAPTRELA QIQKVV++
Sbjct: 60 DVIAQSQSGTGKTATYVIAALQRIDMMKEDTQAIILAPTRELANQIQKVVLS 111
Score = 62.5 bits (145), Expect = 1e-08
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
V++F+ M L E LLRGI+AYGFEKPSAIQQ+AI+PCI+
Sbjct: 20 VDSFEGMMLNENLLRGIFAYGFEKPSAIQQQAIVPCIK 57
>UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome
shotgun sequence; n=5; Euteleostomi|Rep: Chromosome 15
SCAF14542, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 366
Score = 94.7 bits (225), Expect = 2e-18
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Frame = +3
Query: 66 SKDQGSYDGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIM 242
SKD G GP GM+P G ++++W ++ + FDDMNLKE LLRGIYAYGFEKPSAIQQRAI+
Sbjct: 11 SKDHG---GPDGMEPDGIIESNWTEITDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII 67
Query: 243 PCIQ 254
PCI+
Sbjct: 68 PCIK 71
Score = 74.5 bits (175), Expect = 3e-12
Identities = 36/45 (80%), Positives = 41/45 (91%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 394
DVIAQAQSGTGKTATF+ISILQQ++ +E QAL+LAPTRELAQQ
Sbjct: 74 DVIAQAQSGTGKTATFAISILQQLEIDQKETQALVLAPTRELAQQ 118
Score = 49.6 bits (113), Expect = 8e-05
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = +1
Query: 643 FKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 741
F+ LS ++QV+LLSATMP +VLEV++ FMRDPV
Sbjct: 160 FQKLSTNIQVVLLSATMPAEVLEVTKKFMRDPV 192
>UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 339
Score = 93.9 bits (223), Expect = 4e-18
Identities = 44/62 (70%), Positives = 52/62 (83%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
DVI QAQSGTGKTATF ILQQ++ + +CQAL+LAPTRELAQQI+KV+ ALGDHLN K
Sbjct: 51 DVIQQAQSGTGKTATFCSGILQQLNEELTQCQALVLAPTRELAQQIEKVMRALGDHLNVK 110
Query: 440 CH 445
+
Sbjct: 111 IY 112
Score = 39.9 bits (89), Expect = 0.068
Identities = 16/38 (42%), Positives = 29/38 (76%)
Frame = +1
Query: 628 QIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 741
+I+++F++L +QV + SATMP +VLE+++ F+ PV
Sbjct: 110 KIYEIFQLLPERIQVGVFSATMPPEVLEITKKFINKPV 147
>UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein;
n=6; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 656
Score = 91.1 bits (216), Expect = 3e-17
Identities = 39/76 (51%), Positives = 54/76 (71%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGRV D I R LH +++ +F+LDEAD+ML GF++ I D+F+ D Q IL SAT
Sbjct: 129 IGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILFSAT 188
Query: 691 MPDDVLEVSRCFMRDP 738
MP +L+++R F RDP
Sbjct: 189 MPQPILDITRRFQRDP 204
Score = 59.3 bits (137), Expect = 1e-07
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+DV QAQ+GTGKTA F I I++++D + QAL+L+PTRELA Q + L +
Sbjct: 43 KDVTGQAQTGTGKTAAFGIPIIERLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKG 102
Query: 437 -KCHACIGGTNVREDIRQLESGVHV 508
GG + +R L+ V V
Sbjct: 103 LNVVPIYGGQPIERQLRALKGTVQV 127
>UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;
Eukaryota|Rep: ATP-dependent RNA helicase DHH1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 506
Score = 87.8 bits (208), Expect = 3e-16
Identities = 40/84 (47%), Positives = 56/84 (66%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RD++A+A++GTGKTA F I L+++ + + QALI+ PTRELA Q +VV LG H
Sbjct: 84 RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 143
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
C GGTN+R+DI +L VH+
Sbjct: 144 SCMVTTGGTNLRDDILRLNETVHI 167
Score = 62.1 bits (144), Expect = 1e-08
Identities = 31/67 (46%), Positives = 40/67 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D+ +R+ + LF++DEAD+MLSR FK I + L Q +L SAT
Sbjct: 169 VGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSAT 228
Query: 691 MPDDVLE 711
P V E
Sbjct: 229 FPLTVKE 235
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
TF+D LK ELL GI+ GFEKPS IQ+ AI
Sbjct: 47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAI 77
>UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 377
Score = 85.4 bits (202), Expect = 1e-15
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
DVIAQAQSGTGKT+ F++++ Q +DTS RE QALI +PTRELA Q +KV++A+GD +N +
Sbjct: 315 DVIAQAQSGTGKTSMFALTVYQMVDTSNREVQALISSPTRELASQTEKVILAIGDSVNIQ 374
Query: 440 CH 445
H
Sbjct: 375 AH 376
Score = 63.3 bits (147), Expect = 6e-09
Identities = 26/44 (59%), Positives = 36/44 (81%)
Frame = +3
Query: 123 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
T+ +++ +FD M +K +LLRGIYAY FEKPSA+QQRA++P IQ
Sbjct: 269 TEGVELIMSFDQMGIKNDLLRGIYAYSFEKPSAVQQRAVLPIIQ 312
>UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4;
Dikarya|Rep: ATP-dependent RNA helicase DHH1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 625
Score = 83.8 bits (198), Expect = 4e-15
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
RD++A+A++GTGKTA+F I L +I+TS+ QALIL PTRELA Q +V LG H+ N
Sbjct: 74 RDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPN 133
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
+ GGT +R+DI +L+ VH+
Sbjct: 134 LQVMITTGGTTLRDDILRLQQPVHI 158
Score = 53.6 bits (123), Expect = 5e-06
Identities = 29/76 (38%), Positives = 40/76 (52%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+ ++ N +FV+DEAD++LS F I + + QV+L SAT
Sbjct: 160 VGTPGRILDLGSKGIASLNKCGVFVMDEADKLLSEDFMPVIEQTLALCPQERQVMLFSAT 219
Query: 691 MPDDVLEVSRCFMRDP 738
P V E M P
Sbjct: 220 FPWTVKEFKDQHMVQP 235
Score = 45.2 bits (102), Expect = 0.002
Identities = 25/55 (45%), Positives = 31/55 (56%)
Frame = +3
Query: 75 QGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
QG P + P T D Q F+D L+ ELL GIY GFE+PS IQ++AI
Sbjct: 14 QGLAAPPKDLRPQTEDVTATQG-SRFEDFGLRRELLMGIYTAGFERPSPIQEQAI 67
>UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12;
Clostridium|Rep: ATP-dependent RNA helicase -
Clostridium perfringens
Length = 528
Score = 83.4 bits (197), Expect = 6e-15
Identities = 38/79 (48%), Positives = 53/79 (67%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D+I R++L N I VLDEADEML+ GF D + ++ K L D Q +L SAT
Sbjct: 129 VGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLFSAT 188
Query: 691 MPDDVLEVSRCFMRDPVPH 747
MP + +++R +M++ H
Sbjct: 189 MPPQIKKLARNYMKEDTKH 207
Score = 68.9 bits (161), Expect = 1e-10
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLN 433
D+I QAQ+GTGKTA F +I+ D S ++ +ALILAPTRELA Q+ + ++ LG H
Sbjct: 43 DIIGQAQTGTGKTAAFGCAIINNADFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEK 102
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
GG + IR L++GV +
Sbjct: 103 LSVLPIYGGQPIDRQIRALKNGVDI 127
Score = 37.9 bits (84), Expect = 0.27
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
FDD+ LKE LL+ I GFE+PS IQ +I
Sbjct: 6 FDDLGLKESLLKAIKDMGFEEPSQIQAESI 35
>UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF7914, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 502
Score = 81.8 bits (193), Expect = 2e-14
Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
RD++A+A++GTGK+ + I +L++ID QAL+L PTRELA Q+ ++ I + HL
Sbjct: 127 RDILARAKNGTGKSGAYLIPMLERIDLKKDHIQALVLVPTRELALQVSQISIQIAKHLGG 186
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
K A GGTN+R+DI +L+ VHV
Sbjct: 187 VKVMATTGGTNLRDDIMRLDETVHV 211
Score = 38.3 bits (85), Expect = 0.21
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
F+D LK ELL GI+ G+EKPS IQ+ +I
Sbjct: 91 FEDYCLKRELLMGIFEMGWEKPSPIQEESI 120
Score = 33.5 bits (73), Expect(2) = 0.025
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 583 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDP 738
V +AD++LS+ F + D+ L+ + Q++L SAT P V + ++ P
Sbjct: 264 VSPQADKLLSQDFVALVEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKP 315
Score = 27.1 bits (57), Expect(2) = 0.025
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDE 594
+ TPGR+ D++ + + +++ V+DE
Sbjct: 213 IATPGRILDLMKKGVAKVDKVQIMVMDE 240
>UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1;
Methanospirillum hungatei JF-1|Rep: DEAD/DEAH box
helicase-like - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 531
Score = 80.2 bits (189), Expect = 5e-14
Identities = 33/77 (42%), Positives = 53/77 (68%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGRV D I R+ L + + L VLDEAD+ML GF++ I ++ + + Q ++LSAT
Sbjct: 128 IGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTVILSAT 187
Query: 691 MPDDVLEVSRCFMRDPV 741
P ++L++SR F ++P+
Sbjct: 188 FPPEILDISRRFQKNPI 204
Score = 52.0 bits (119), Expect = 2e-05
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA- 436
DV QA +GTGKTA F I ++ + R Q ++L P+RELA Q+ + L H
Sbjct: 43 DVAGQAYTGTGKTAAFGIPAIELCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGI 102
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
GG + I+ L GV +
Sbjct: 103 SILPVYGGQPIERQIKALSRGVQI 126
>UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Euryarchaeota|Rep: DEAD/DEAH box helicase domain
protein - Methanococcus maripaludis
Length = 541
Score = 79.8 bits (188), Expect = 7e-14
Identities = 32/75 (42%), Positives = 54/75 (72%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I+RR + + VLDEADEML+ GF D + ++ K +S + +++L SAT
Sbjct: 126 VGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRMLLFSAT 185
Query: 691 MPDDVLEVSRCFMRD 735
+PD ++++++ +MR+
Sbjct: 186 LPDSIMKLAKNYMRE 200
Score = 79.4 bits (187), Expect = 9e-14
Identities = 39/85 (45%), Positives = 53/85 (62%)
Frame = +2
Query: 254 RRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 433
+RD++ QAQ+GTGKTA F I IL+ ID S R QALILAPTRELA Q+ + + ++
Sbjct: 40 KRDIVGQAQTGTGKTAAFGIPILETIDESSRNTQALILAPTRELAIQVAEEIDSIKGSKR 99
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
GG ++ IR+L GV +
Sbjct: 100 LNVFPVYGGQSIDRQIRELRRGVQI 124
>UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase -
Symbiobacterium thermophilum
Length = 526
Score = 79.4 bits (187), Expect = 9e-14
Identities = 40/89 (44%), Positives = 54/89 (60%)
Frame = +2
Query: 242 ALHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 421
AL +DVI QAQ+GTGKTA F + I++++ R QAL+L PTRELA Q+ + + +G
Sbjct: 39 ALLQGKDVIGQAQTGTGKTAAFGVPIVERLVPGQRAVQALVLTPTRELAIQVAEEITKIG 98
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
H K A GG ++ IR L GV V
Sbjct: 99 RHARVKTIAIYGGQSIERQIRSLRFGVDV 127
Score = 74.1 bits (174), Expect = 3e-12
Identities = 33/82 (40%), Positives = 52/82 (63%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D + R L + +++ VLDEADEML GF + I + + A+ Q +L SAT
Sbjct: 129 IGTPGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAERQTLLFSAT 188
Query: 691 MPDDVLEVSRCFMRDPVPHTCT 756
MP ++ ++ +MRDP+ + T
Sbjct: 189 MPPEIRRLAGRYMRDPITISVT 210
Score = 34.7 bits (76), Expect = 2.5
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
TF D+ L E++L+ + GFE+PS IQ +AI +Q
Sbjct: 7 TFRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQ 42
>UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH
family; n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
ATP-dependent RNA helicase, DEAD/DEAH family -
Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB8303)
Length = 532
Score = 78.6 bits (185), Expect = 2e-13
Identities = 36/76 (47%), Positives = 49/76 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I R L +++ VLDEADEML GF++ I + + VQ SAT
Sbjct: 129 VGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSAFFSAT 188
Query: 691 MPDDVLEVSRCFMRDP 738
MPD +LE++R F+R+P
Sbjct: 189 MPDGILELARRFLREP 204
Score = 74.1 bits (174), Expect = 3e-12
Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
RDVI QAQ+GTGKTA F + +LQ+ID + R QAL+L PTRELA Q+ + AL HL
Sbjct: 43 RDVIGQAQTGTGKTAAFGLPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRG 102
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
+ + GG + L G V
Sbjct: 103 VRILSVYGGQPIEPQASALRRGAQV 127
Score = 37.1 bits (82), Expect = 0.48
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
VE+F D+ L+EELL+ I GF +PS IQ AI
Sbjct: 4 VESFKDLPLEEELLKAIEELGFTEPSPIQSIAI 36
>UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase
protein; n=1; Spiroplasma citri|Rep: Putative
atp-dependent rna helicase protein - Spiroplasma citri
Length = 443
Score = 78.6 bits (185), Expect = 2e-13
Identities = 39/83 (46%), Positives = 50/83 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I R+ L + IK VLDEADEML GFK + VF+ Q +L SAT
Sbjct: 124 VGTPGRIADHINRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQTLLFSAT 183
Query: 691 MPDDVLEVSRCFMRDPVPHTCTE 759
MP VLE++ + +PV T+
Sbjct: 184 MPKQVLEIANNYQTNPVEIVVTK 206
Score = 58.4 bits (135), Expect = 2e-07
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+D+I ++ +GTGKT F + ILQ ++T +++ QA+IL PT ELA QI + V +L
Sbjct: 39 QDIIGKSHTGTGKTVAFIVPILQNLNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEG 98
Query: 437 KCHACI-GGTNVREDIRQL 490
I GG++++ I L
Sbjct: 99 VNATLICGGSHIQRQIYAL 117
>UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine
gamma proteobacterium HTCC2080|Rep: ATP-dependent RNA
helicase - marine gamma proteobacterium HTCC2080
Length = 582
Score = 77.8 bits (183), Expect = 3e-13
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RDV+ AQ+GTGKTA F++ IL ID +R QAL+L PTRELAQQ+ + + G +
Sbjct: 47 RDVVGLAQTGTGKTAAFALPILANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGG 106
Query: 437 -KCHACIGGTNVREDIRQLESGVHV 508
+ + GG ++R+ ++ L G H+
Sbjct: 107 LRILSIFGGADMRQQLKSLREGTHI 131
Score = 61.3 bits (142), Expect = 3e-08
Identities = 31/76 (40%), Positives = 43/76 (56%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D I RR++ I VLDEADEML GF D + + + +V L SAT
Sbjct: 133 VATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVALFSAT 192
Query: 691 MPDDVLEVSRCFMRDP 738
MP V +++ + +P
Sbjct: 193 MPKRVRDIANKHLSNP 208
>UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n=1;
Mus musculus|Rep: UPI0000566899 UniRef100 entry - Mus
musculus
Length = 449
Score = 77.4 bits (182), Expect = 4e-13
Identities = 34/85 (40%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
RD++A+A++GTGK+ + I +L+++D QA+++ PTRELA Q+ ++ I + H+
Sbjct: 119 RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 178
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
AK A GGTN+R+D+ +L+ HV
Sbjct: 179 AKVMATTGGTNLRDDVMRLDDTGHV 203
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D+I + + +++ VLDEAD++LS+ F + L + Q++L SAT
Sbjct: 205 IATPGRILDLIKKCLEKVDHVQMVVLDEADKLLSQDFVQIMEAFILTLPKNRQILLYSAT 264
Query: 691 MPDDVLEVSRCFMRDP 738
P V + ++ P
Sbjct: 265 FPLSVQKFMNSHLQKP 280
>UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Xylella
fastidiosa
Length = 614
Score = 77.4 bits (182), Expect = 4e-13
Identities = 36/80 (45%), Positives = 51/80 (63%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D + R L + +K VLDEADEML GF + + +V + L A QV L SAT
Sbjct: 139 VGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSAT 198
Query: 691 MPDDVLEVSRCFMRDPVPHT 750
MP + +++ +++DP+ T
Sbjct: 199 MPPQIRRIAQTYLQDPIEVT 218
Score = 59.3 bits (137), Expect = 1e-07
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Frame = +2
Query: 242 ALHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 421
AL RDV+ QAQ+GTGKTA F++ +L + + + Q L+LAPTRELA Q+ +
Sbjct: 48 ALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYA 107
Query: 422 DHLNA-KCHACIGGTNVREDIRQLESGVHV 508
++ + GG + + + L+ GVHV
Sbjct: 108 ASISGFRVLPVYGGQSYGQQLAALKRGVHV 137
>UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1;
Mycoplasma pulmonis|Rep: ATP-DEPENDENT RNA HELICASE -
Mycoplasma pulmonis
Length = 480
Score = 77.0 bits (181), Expect = 5e-13
Identities = 38/84 (45%), Positives = 53/84 (63%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+D+I QAQ+GTGKTA F+I IL +D SI Q L++APTRELA QI + LG + +
Sbjct: 39 KDIIGQAQTGTGKTAAFAIPILSNLDCSINRIQHLVIAPTRELANQIYDQLNILGKYTCS 98
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
K +GG + + L SGV++
Sbjct: 99 KIALILGGVSYEKQKAALNSGVNI 122
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ + + + IK F LDEADE+L GF ++I + L Q +AT
Sbjct: 124 VATPGRLEDLLAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQNFFFTAT 183
Query: 691 MPDDVLEVSR 720
+ ++S+
Sbjct: 184 FDEKTKKLSQ 193
Score = 35.5 bits (78), Expect = 1.5
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 245
F MN+K E+L+ + GFEKP+ IQ+ A++P
Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQE-AVLP 33
>UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: ATP-dependent RNA
helicase - Neptuniibacter caesariensis
Length = 417
Score = 77.0 bits (181), Expect = 5e-13
Identities = 35/81 (43%), Positives = 49/81 (60%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C V TPGR+ D++ + AL +K VLDEAD ML GF D++ D+ +VQ +L
Sbjct: 126 CDIVVATPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGNVQTLL 185
Query: 679 LSATMPDDVLEVSRCFMRDPV 741
SAT PD V E++ +R+PV
Sbjct: 186 FSATFPDKVKELTEELLRNPV 206
Score = 46.0 bits (104), Expect = 0.001
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDT----SIRECQALILAPTRELAQQIQKVVIALGDH 427
D+IA A++G+GKTA F + +L+++ + AL+L PTRELA Q+ + V ++
Sbjct: 40 DLIAAAETGSGKTAGFVLPLLEKLHSIPAPGNNLTHALVLVPTRELAVQVSQSVDRYSEN 99
Query: 428 LNAKCH--ACIGGTNVREDIRQLESGVHV 508
K A GG + ++ L G +
Sbjct: 100 CPRKIRSVAIYGGAAINPQMQSLSKGCDI 128
>UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35;
Vibrionales|Rep: ATP-dependent RNA helicase DeaD -
Vibrio cholerae
Length = 663
Score = 76.2 bits (179), Expect = 8e-13
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D+ITR LH + F+LDEADEML GF D + + + Q +L SAT
Sbjct: 150 VGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSAT 209
Query: 691 MPDDVLEVSRCFMRDP 738
MP V E+ F+R+P
Sbjct: 210 MPPMVKEIVERFLRNP 225
Score = 71.7 bits (168), Expect = 2e-11
Identities = 34/85 (40%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RD + +AQ+GTGKTA FS+ +L +++ S + QA+++APTRELA Q+ + LG ++
Sbjct: 64 RDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKG 123
Query: 437 -KCHACIGGTNVREDIRQLESGVHV 508
K GG ++ + +R L+SG H+
Sbjct: 124 LKVLEIYGGASILDQMRALKSGAHI 148
>UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2;
Salinispora|Rep: DEAD/DEAH box helicase-like -
Salinispora arenicola CNS205
Length = 633
Score = 76.2 bits (179), Expect = 8e-13
Identities = 35/77 (45%), Positives = 50/77 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+ ++ L + ++ VLDEAD ML GF D + + +L D Q +L SAT
Sbjct: 237 VGTPGRLLDLAKQKHLKLDRVRALVLDEADRMLDLGFLDDVERILAILPEDRQTMLFSAT 296
Query: 691 MPDDVLEVSRCFMRDPV 741
MPD ++ +SR F+R PV
Sbjct: 297 MPDPIVALSRRFLRRPV 313
Score = 52.8 bits (121), Expect = 9e-06
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGDH 427
D+I QA +GTGKT F + +L+Q+ + QAL++ PTREL Q+ K + A G
Sbjct: 149 DLIGQAPTGTGKTLGFGVPLLEQVLAPAEGGDGTPQALVVVPTRELGIQVAKDLQAAGST 208
Query: 428 LNAKCHACIGGTNVREDIRQLESGVHV 508
+ GG I L SGV +
Sbjct: 209 RGVRVLPIYGGVAYEPQIEALRSGVEI 235
>UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11;
Cyanobacteria|Rep: ATP-dependent RNA helicase - Anabaena
sp. (strain PCC 7120)
Length = 513
Score = 75.8 bits (178), Expect = 1e-12
Identities = 38/80 (47%), Positives = 47/80 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D++ R L + +K FVLDEADEMLS GF D + + D Q L SAT
Sbjct: 126 VGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTALFSAT 185
Query: 691 MPDDVLEVSRCFMRDPVPHT 750
MP + + F+R PV T
Sbjct: 186 MPPSIRMLVNKFLRSPVTVT 205
Score = 74.1 bits (174), Expect = 3e-12
Identities = 34/84 (40%), Positives = 53/84 (63%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RDV+ Q+Q+GTGKTA FS+ IL+++D + QA++L PTRELA Q+ + +
Sbjct: 41 RDVVGQSQTGTGKTAAFSLPILERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVGNSGL 100
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ A GG ++ + QL+ GVH+
Sbjct: 101 RTLAIYGGQSIDRQMLQLKRGVHI 124
>UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;
n=1; Cytophaga hutchinsonii ATCC 33406|Rep: Inducible
ATP-independent RNA helicase - Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469)
Length = 457
Score = 75.8 bits (178), Expect = 1e-12
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 245 LHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 424
L+ ++V+ AQ+GTGKTA F + +LQQI+ S+++ Q L+L PTREL QQ+ K +
Sbjct: 36 LNSTKNVVGVAQTGTGKTAAFGLPVLQQINPSLQQTQVLVLVPTRELGQQVAKDLFVFSR 95
Query: 425 HL-NAKCHACIGGTNVREDIRQLESGVHV 508
++ A GG + E I++LE+ H+
Sbjct: 96 YIVRIHTEAVYGGKKIEEQIKKLETPKHI 124
Score = 58.0 bits (134), Expect = 2e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D+I R+A++ + +K +LDEADEML+ GF I + K+ + +L ++T
Sbjct: 126 VATPGRLLDLIARKAVNLSNLKYLILDEADEMLNMGFLPDIDKIMKIAKPTARKLLFTST 185
Query: 691 MPDDVLEVSRCFM 729
+ ++ + R ++
Sbjct: 186 LGSELKLIIREYL 198
>UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor
4A-2; n=5; Oryza sativa|Rep: Putative eukaryotic
initiation factor 4A-2 - Oryza sativa subsp. japonica
(Rice)
Length = 416
Score = 75.8 bits (178), Expect = 1e-12
Identities = 39/83 (46%), Positives = 52/83 (62%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D+I Q+ GT T T ILQ++D + ECQAL+L PT +LA + Q V+ LG L+AK
Sbjct: 87 DIIQQSLFGT--TVTLCCGILQRLDYASTECQALVLVPTHDLAHETQNVIGVLGQFLSAK 144
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
HA GGT+ ED + L +GV V
Sbjct: 145 AHAFCGGTSAHEDQQILSTGVQV 167
Score = 71.7 bits (168), Expect = 2e-11
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTP V M+ RAL + I++FVLDEADE+L RGFKDQIH + + L Q SA+
Sbjct: 169 VGTPCHVLGMLQGRALCPDHIRMFVLDEADEVL-RGFKDQIHGIIQFLPTKTQFGFFSAS 227
Query: 691 MPDDVLEVSRCFMRDPV 741
M + LE+ R +M PV
Sbjct: 228 MSHEALEMCRKYMNKPV 244
>UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 521
Score = 75.4 bits (177), Expect = 1e-12
Identities = 35/76 (46%), Positives = 49/76 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D + R ++H + IK+ VLDEADEML GF++ + + K AD Q I+ SAT
Sbjct: 133 IATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQTIMFSAT 192
Query: 691 MPDDVLEVSRCFMRDP 738
M DDVL + + F P
Sbjct: 193 MTDDVLTLMKKFQNHP 208
Score = 55.2 bits (127), Expect = 2e-06
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
+D+I AQ+GTGKTA F+I ++ ++ + QALIL PTREL Q+ + L + N
Sbjct: 47 KDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRELVIQVSEQFRKLIKYKGN 106
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
+ GG + +R L +
Sbjct: 107 FEVVPIYGGQEIERQLRALRKNPQI 131
>UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A family;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: ATP-dependent RNA helicase, eIF-4A family -
Methanobacterium thermoautotrophicum
Length = 425
Score = 75.4 bits (177), Expect = 1e-12
Identities = 36/83 (43%), Positives = 53/83 (63%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
DV+ +AQ+GTGKTA F+I +L+ ++ R QALI+ PTREL Q+ + + +G ++ K
Sbjct: 43 DVVGEAQTGTGKTAAFAIPVLENLEAE-RVPQALIICPTRELCLQVSEEIKRIGKYMKVK 101
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
A GG ++ I QL GVHV
Sbjct: 102 VLAVYGGQSIGNQIAQLRRGVHV 124
Score = 62.9 bits (146), Expect = 8e-09
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D I R + I VLDEADEML+ GF D I + + Q +L SAT
Sbjct: 126 VATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFSAT 185
Query: 691 MPDDVLEVSRCFMRDP 738
+ +L ++R +MR+P
Sbjct: 186 VSKPILRIARKYMRNP 201
>UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1;
Blastopirellula marina DSM 3645|Rep: ATP-dependent RNA
helicase - Blastopirellula marina DSM 3645
Length = 428
Score = 74.5 bits (175), Expect = 3e-12
Identities = 34/76 (44%), Positives = 51/76 (67%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D++TRRAL ++ VLDEAD ML GF+ I + + + Q +LLSAT
Sbjct: 129 VGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQTLLLSAT 188
Query: 691 MPDDVLEVSRCFMRDP 738
+P + ++++ +MR+P
Sbjct: 189 VPPTIEKLAQRYMRNP 204
Score = 63.7 bits (148), Expect = 5e-09
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQID--TSIRECQALILAPTRELAQQIQKVVIALGDHL 430
RDV+ QA++GTGKTA F I I+++++ + R QALIL PTRELA Q++ + L
Sbjct: 42 RDVLGQARTGTGKTAAFGIPIIERLEHGPNSRNPQALILTPTRELAVQVRDEIAKLTHGQ 101
Query: 431 NAKCHACIGGTNVREDIRQLESGVHV 508
A GG +R + +L+ H+
Sbjct: 102 RINVVAVYGGKPLRSQMEKLKRAPHI 127
>UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase
MJ0669; n=11; cellular organisms|Rep: Probable
ATP-dependent RNA helicase MJ0669 - Methanococcus
jannaschii
Length = 367
Score = 74.5 bits (175), Expect = 3e-12
Identities = 32/75 (42%), Positives = 49/75 (65%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I R L+ +K F+LDEADEML+ GF + + + D +++L SAT
Sbjct: 128 VGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSAT 187
Query: 691 MPDDVLEVSRCFMRD 735
MP ++L +++ +M D
Sbjct: 188 MPREILNLAKKYMGD 202
Score = 55.6 bits (128), Expect = 1e-06
Identities = 28/84 (33%), Positives = 53/84 (63%)
Frame = +2
Query: 245 LHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 424
L+ +++AQA++G+GKTA+F+I +++ ++ + +A+IL PTRELA Q+ + +L
Sbjct: 41 LNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKG 99
Query: 425 HLNAKCHACIGGTNVREDIRQLES 496
+ N K GG + I+ L++
Sbjct: 100 NKNLKIAKIYGGKAIYPQIKALKN 123
>UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Rhodopirellula baltica
Length = 452
Score = 74.1 bits (174), Expect = 3e-12
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Frame = +2
Query: 215 FCNPATRNNALHPR----RDVIAQAQSGTGKTATFSISILQQIDT--SIRECQALILAPT 376
F P+ AL P +DVI QA++GTGKTA FSI IL+Q+D+ R+ QA+++ PT
Sbjct: 64 FTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILEQLDSLEDCRDPQAIVIVPT 123
Query: 377 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
RELA Q+ L + + GG N+ +RQLE+G +
Sbjct: 124 RELADQVAAEAERLARGVPTEIAVLSGGKNMNRQLRQLENGTQL 167
Score = 72.1 bits (169), Expect = 1e-11
Identities = 35/81 (43%), Positives = 48/81 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV+D + R L N + VLDEAD ML GF+ QI + + + Q +LLSAT
Sbjct: 169 VGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLLLSAT 228
Query: 691 MPDDVLEVSRCFMRDPVPHTC 753
+P V ++ +M +PV C
Sbjct: 229 LPPVVRRLAESYMHEPVVIDC 249
>UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18;
Bacteria|Rep: ATP-dependent RNA helicase DeaD - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 658
Score = 74.1 bits (174), Expect = 3e-12
Identities = 35/76 (46%), Positives = 50/76 (65%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D I R++L+ +++ VLDEADEML GF D + + + A+ Q L SAT
Sbjct: 168 VGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTALFSAT 227
Query: 691 MPDDVLEVSRCFMRDP 738
MPD + V+ ++R+P
Sbjct: 228 MPDAIRRVAHRYLREP 243
Score = 64.1 bits (149), Expect = 4e-09
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
D++ +AQ+GTGKTA F++ +L ++D +++ Q L+LAPTRELA Q+ + +L
Sbjct: 83 DLLGEAQTGTGKTAAFALPLLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGF 142
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
GG ++ +RQL G HV
Sbjct: 143 HVLPVYGGQSMVVQLRQLARGAHV 166
>UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=90; Bacilli|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Bacillus subtilis
Length = 494
Score = 74.1 bits (174), Expect = 3e-12
Identities = 33/76 (43%), Positives = 47/76 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I RR + N + V+DEADEML+ GF D I + + ++ Q +L SAT
Sbjct: 126 VGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSAT 185
Query: 691 MPDDVLEVSRCFMRDP 738
MP + ++ FM +P
Sbjct: 186 MPAPIKRIAERFMTEP 201
Score = 70.1 bits (164), Expect = 6e-11
Identities = 33/84 (39%), Positives = 52/84 (61%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+DVI QAQ+GTGKTA F I ++++I+ QA+++APTRELA Q+ + + +G A
Sbjct: 41 KDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRA 100
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
K GG ++ IR L+ ++
Sbjct: 101 KVLPIYGGQDIGRQIRALKKNPNI 124
>UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=16; cellular organisms|Rep: DEAD-box ATP-dependent RNA
helicase ydbR - Bacillus anthracis
Length = 528
Score = 74.1 bits (174), Expect = 3e-12
Identities = 32/84 (38%), Positives = 51/84 (60%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+D+I QAQ+GTGKTA F + +L ++DT Q +++APTRELA Q+ + + +G H
Sbjct: 40 KDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRV 99
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ GG ++ IR L+ H+
Sbjct: 100 RILPIYGGQDINRQIRALKKHPHI 123
Score = 71.3 bits (167), Expect = 2e-11
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I R+ L ++ VLDEADEML+ GF + I + + Q +L SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 691 MPDDVLEVSRCFMRDP 738
MPD + ++ FM +P
Sbjct: 185 MPDPIRRIAERFMTEP 200
>UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog;
n=20; Pasteurellaceae|Rep: Cold-shock DEAD box protein A
homolog - Haemophilus influenzae
Length = 613
Score = 74.1 bits (174), Expect = 3e-12
Identities = 35/76 (46%), Positives = 47/76 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I R L+ + ++ VLDEADEML GF D + V L + Q L SAT
Sbjct: 129 VGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSAT 188
Query: 691 MPDDVLEVSRCFMRDP 738
MP+ + +++ FM DP
Sbjct: 189 MPEPIRRITKRFMNDP 204
Score = 56.0 bits (129), Expect = 1e-06
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
DV+ AQ+G+GKTA F++ +L QID S + Q L++APTRELA Q+ +
Sbjct: 44 DVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGT 103
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ GG +R L+ G V
Sbjct: 104 RIVTLYGGQRYDIQLRALKQGAQV 127
Score = 33.9 bits (74), Expect = 4.4
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
TF+D+ L E +L+ + GFE PS IQQ I
Sbjct: 6 TFNDLGLPEFILKAVSDLGFETPSPIQQSCI 36
>UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1;
Mesoplasma florum|Rep: ATP-dependent RNA helicase -
Mesoplasma florum (Acholeplasma florum)
Length = 666
Score = 73.7 bits (173), Expect = 4e-12
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D + R+ L + ++ +LDEADEML GFK++I +F+ +S DVQ+ L SAT
Sbjct: 124 VGTPGRVNDHLNRKTLKLDDVRTIILDEADEMLKMGFKNEIDALFERVSPDVQIGLFSAT 183
Query: 691 MPDDVLEVSRCFMRD 735
V++++ +M +
Sbjct: 184 TSPKVMQIANDYMNE 198
Score = 64.5 bits (150), Expect = 3e-09
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
+++ ++ +GTGKTA+F + IL++I+ + R QA+I+APTRELA QI + G + N
Sbjct: 39 KNIFGKSSTGTGKTASFVLPILEKIEPNKRRVQAVIMAPTRELAMQIVNQIRIFGSRIEN 98
Query: 434 AKCHACIGGTNVREDIRQLE 493
IGG ++R+ I++L+
Sbjct: 99 LVIAPLIGGADMRDQIKRLK 118
>UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=13; Bacteroidetes|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family protein - Dokdonia
donghaensis MED134
Length = 638
Score = 73.7 bits (173), Expect = 4e-12
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
RD++A AQ+GTGKTA F +LQ ID S + Q LI+APTREL QI + H+
Sbjct: 40 RDMVALAQTGTGKTAAFGFPLLQNIDASSKTTQGLIIAPTRELCLQITNEMKLYAKHIKG 99
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
+ A GG+N++E R++ G +
Sbjct: 100 VRVVAVYGGSNIQEQAREISRGAQI 124
Score = 67.3 bits (157), Expect = 4e-10
Identities = 34/80 (42%), Positives = 47/80 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ DM+ RR + + VLDEADEML+ GF + I ++ D L SAT
Sbjct: 126 VATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDKLTWLFSAT 185
Query: 691 MPDDVLEVSRCFMRDPVPHT 750
MP +V +++ FM DP+ T
Sbjct: 186 MPREVARIAKEFMHDPLEIT 205
Score = 33.9 bits (74), Expect = 4.4
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
TFD + L LL+ I GFE PS IQ+ AI
Sbjct: 2 TFDQLGLNAPLLQAIADMGFETPSKIQEEAI 32
>UniRef50_A0EA02 Cluster: Chromosome undetermined scaffold_85, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_85,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 957
Score = 73.7 bits (173), Expect = 4e-12
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ ++I ++ N I + +LDEAD ML GF+ Q+ D+ + D Q ILLSAT
Sbjct: 204 VATPGRLIELIDEGMVNLNKITMLILDEADRMLDMGFEPQVRDIVSTIREDRQTILLSAT 263
Query: 691 MPDDVLEVSRCFMRDPV 741
P++V ++S+ F DP+
Sbjct: 264 WPNEVQQLSKEFCYDPI 280
Score = 33.5 bits (73), Expect = 5.9
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQID--TSIREC---QALILAPTRELAQQIQKVVIAL 418
R+ +A AQ+G+GKT + + L ++ I E + LIL PTREL QI ++ L
Sbjct: 97 RNALAIAQTGSGKTLAYLLPALVHLEQHAMIMESPQPKLLILVPTRELGVQIYDQLLQL 155
>UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase - Bacillus
halodurans
Length = 539
Score = 73.3 bits (172), Expect = 6e-12
Identities = 32/76 (42%), Positives = 48/76 (63%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D + R+ L + + +LDEADEML GF D I + + + + Q +L SAT
Sbjct: 128 IGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDMGFIDDIESILRQVKNERQTLLFSAT 187
Query: 691 MPDDVLEVSRCFMRDP 738
MP + ++SR +M DP
Sbjct: 188 MPPAIKKLSRKYMNDP 203
Score = 71.3 bits (167), Expect = 2e-11
Identities = 37/83 (44%), Positives = 50/83 (60%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
DVI QAQ+GTGKTA F I +++++ T R QALIL PTRELA Q+ + L H +
Sbjct: 45 DVIGQAQTGTGKTAAFGIPVVEKVSTG-RHVQALILTPTRELAIQVSGEIQKLSKHKKIR 103
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
GG ++ I+ L+ GV V
Sbjct: 104 TLPIYGGQSIVHQIKALKQGVQV 126
>UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2;
Treponema|Rep: ATP-dependent RNA helicase - Treponema
pallidum
Length = 649
Score = 73.3 bits (172), Expect = 6e-12
Identities = 33/73 (45%), Positives = 48/73 (65%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGT GRV D I R +L + ++ F+LDEADEML+ GF + I +F + D +V++ SAT
Sbjct: 170 VGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSAT 229
Query: 691 MPDDVLEVSRCFM 729
MP +L ++ FM
Sbjct: 230 MPRQILSIASTFM 242
Score = 66.1 bits (154), Expect = 9e-10
Identities = 30/80 (37%), Positives = 49/80 (61%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
++IA+A++GTGKTA F + ++Q++ + AL+L PTRELA Q+ + +L +
Sbjct: 86 NIIAKARTGTGKTAAFGLPLIQELGSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPR 145
Query: 440 CHACIGGTNVREDIRQLESG 499
H GG ++ E +R LE G
Sbjct: 146 IHTVYGGVSIAEQLRNLEQG 165
>UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Anaeromyxobacter sp. Fw109-5|Rep: DEAD/DEAH box
helicase domain protein - Anaeromyxobacter sp. Fw109-5
Length = 680
Score = 73.3 bits (172), Expect = 6e-12
Identities = 34/76 (44%), Positives = 49/76 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+YD I RR L + + LDEADEML+ GF +++ + L D Q +L SAT
Sbjct: 143 VGTPGRIYDHIRRRTLKLDETMVCCLDEADEMLNMGFFEEVTRILDNLPKDCQQLLFSAT 202
Query: 691 MPDDVLEVSRCFMRDP 738
+P D+ ++ R ++ DP
Sbjct: 203 VPADIEQIIRDYLTDP 218
Score = 71.3 bits (167), Expect = 2e-11
Identities = 34/84 (40%), Positives = 54/84 (64%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+DVI ++++GTGKTA F+I IL++I R AL++ PTRELA Q+ + AL H +
Sbjct: 58 KDVIVRSKTGTGKTAAFAIPILERIADGRRRPSALVMCPTRELAIQVAQEFTALAKHRDL 117
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
A GG ++ E +++LE+G +
Sbjct: 118 SVVAVYGGASMGEQLQKLEAGAEI 141
>UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 484
Score = 73.3 bits (172), Expect = 6e-12
Identities = 35/77 (45%), Positives = 48/77 (62%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D + + + IK V+DEADEM + GF DQI + K LS +LLSAT
Sbjct: 127 VGTPGRIIDHMEKGTFDTSQIKYLVIDEADEMFNMGFVDQIETIIKDLSKKRVTMLLSAT 186
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + +S +M+DP+
Sbjct: 187 MPSAIETLSNRYMKDPI 203
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/89 (35%), Positives = 51/89 (57%)
Frame = +2
Query: 242 ALHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 421
A+ +D+I ++Q+G+GKTA F+I I Q +D + QAL+L PTRELA Q+++ + +G
Sbjct: 37 AILEHKDIIVKSQTGSGKTAAFAIPICQLVDWDENKPQALVLVPTRELAIQVKEDMFNIG 96
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
K A G ++L+ HV
Sbjct: 97 RFKRLKVAAVYGKAPFYHQEKELKQKTHV 125
>UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6;
Bacteroidetes|Rep: ATP-dependent RNA helicase -
Polaribacter irgensii 23-P
Length = 447
Score = 73.3 bits (172), Expect = 6e-12
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 245 LHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 424
L+ + D++A A++GTGKTA F + +LQ ID + QA+ILAPTREL QQI +I+ +
Sbjct: 38 LNDKEDIVALAKTGTGKTAAFGLPLLQLIDVNNDAIQAIILAPTRELGQQIAANLISFAE 97
Query: 425 HLNAKCHACI-GGTNVREDIRQLESGVHV 508
H + A + GG ++ I +L+ H+
Sbjct: 98 HTSQVSIATLCGGIPIKPQIERLKEATHI 126
Score = 52.4 bits (120), Expect = 1e-05
Identities = 25/77 (32%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ R A+ +I F+LDEADEM++ K+ + + K + + L +AT
Sbjct: 128 VATPGRLADLVKREAIDIKSISYFILDEADEMVT-ALKEGLDSIIKEIPKARRTFLFTAT 186
Query: 691 MPDDVLEVSRCFMRDPV 741
+P + ++ + +M V
Sbjct: 187 LPGTLKQLIQNYMAPKV 203
>UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_102,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 395
Score = 73.3 bits (172), Expect = 6e-12
Identities = 33/84 (39%), Positives = 52/84 (61%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RDV+ Q TGKT S+S+L D S+++ Q LIL TR+L ++ +++ALG LN
Sbjct: 60 RDVVIQNFRSTGKTTVMSLSVLSIFDLSVKKIQVLILQKTRKLTEENAGLIMALGKFLNV 119
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
HAC G ++++DI ++ GV +
Sbjct: 120 SIHACSEGNSIQDDISVVQQGVQI 143
Score = 62.1 bits (144), Expect = 1e-08
Identities = 27/77 (35%), Positives = 48/77 (62%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTP RV++++ R+ + +K+ +LDEADEML K ++ +FK L Q +L++AT
Sbjct: 145 LGTPDRVFELVQRKEISFAHLKMIILDEADEMLIDESKSLVYCIFKYLPPKPQYVLVTAT 204
Query: 691 MPDDVLEVSRCFMRDPV 741
+ D+L+ F +P+
Sbjct: 205 LSQDILDFIEKFFNNPL 221
Score = 50.0 bits (114), Expect = 6e-05
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +3
Query: 138 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
+ TF+ M L++ELLRGI A+GF +P +QQRA++P IQ
Sbjct: 20 IQSTFESMKLRKELLRGINAFGFIRPLEVQQRALVPLIQ 58
>UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3;
Alteromonadales|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 594
Score = 72.9 bits (171), Expect = 8e-12
Identities = 32/77 (41%), Positives = 52/77 (67%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D++ + L + +K+ VLDEADEML+ GF + I + K + Q L SAT
Sbjct: 132 VGTPGRLIDLLNKNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVPNTAQRALFSAT 191
Query: 691 MPDDVLEVSRCFMRDPV 741
MP+ + ++++ F++DP+
Sbjct: 192 MPNAIRKLAKTFLKDPL 208
Score = 61.3 bits (142), Expect = 3e-08
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +2
Query: 242 ALHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 421
AL +DV+ +AQ+GTGKTA F + L +ID S+++ Q L++ PTRELA Q+ + +
Sbjct: 41 ALLEGQDVLGEAQTGTGKTAAFGLPALAKIDASVKQTQVLVVTPTRELAIQVAEALEGFA 100
Query: 422 DHLNAKCHACI-GGTNVREDIRQLESGVHV 508
+ A + GG ++ L+ G +
Sbjct: 101 AKMRGVGVATVYGGAPFGPQVKALKQGTAI 130
>UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Zymomonas mobilis
Length = 458
Score = 72.9 bits (171), Expect = 8e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D+I +RAL +++FVLDEAD+ML GF + + K+L + Q + SAT
Sbjct: 134 VATPGRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNRQTLFFSAT 193
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + E+S F+ DPV
Sbjct: 194 MPKTIQELSSQFLSDPV 210
Score = 58.4 bits (135), Expect = 2e-07
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKVVIALG 421
+D+ AQ+GTGKTA F++ + + T+ R C+ LIL+PTRELA QI +
Sbjct: 44 KDLCGIAQTGTGKTAAFALPSIHYLATNPQARPQRGCRMLILSPTRELASQIARACNDYT 103
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
HL +A GG + +R L+ G +
Sbjct: 104 RHLRMSVNAVFGGVPIGRQMRMLDRGTDI 132
>UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia
psychrerythraea 34H|Rep: RNA helicase DeaD - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 611
Score = 72.9 bits (171), Expect = 8e-12
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG-DHLN 433
+DV+ +AQ+GTGKTA F + L +IDTSI++ Q ++LAPTRELA Q+ + + + G D
Sbjct: 53 KDVLGEAQTGTGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKG 112
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
+ GG + +QLE G V
Sbjct: 113 LRVATLYGGQSYGPQFQQLERGAQV 137
Score = 69.3 bits (162), Expect = 1e-10
Identities = 31/76 (40%), Positives = 50/76 (65%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D + R++L + +++ VLDEADEML+ GF + I + + Q+ L SAT
Sbjct: 139 VGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSAT 198
Query: 691 MPDDVLEVSRCFMRDP 738
MP + +++ F++DP
Sbjct: 199 MPPAIRKIANRFLKDP 214
>UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=7;
Prochlorococcus marinus|Rep: DEAD/DEAH box helicase-like
protein - Prochlorococcus marinus (strain MIT 9312)
Length = 593
Score = 72.9 bits (171), Expect = 8e-12
Identities = 32/76 (42%), Positives = 49/76 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I + N+I VLDEADEML+ GF + I + L + Q++L SAT
Sbjct: 176 VGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMVLFSAT 235
Query: 691 MPDDVLEVSRCFMRDP 738
MP+++ +++ ++ DP
Sbjct: 236 MPNEIRNIAKKYLNDP 251
Score = 59.7 bits (138), Expect = 8e-08
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Frame = +2
Query: 209 KTFCNPATRNNALHPR----RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAP 373
K + NP A P RD++ QAQ+GTGKTA F++ +++++ D + L++ P
Sbjct: 69 KGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLADNKELNAKVLVMTP 128
Query: 374 TRELAQQIQKVVIAL-GDHLNAKCHACIGGTNVREDIRQLESGVHV 508
TRELA Q+ + + + N K A GGT+ R I L+ V V
Sbjct: 129 TRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKRKVDV 174
>UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2;
sulfur-oxidizing symbionts|Rep: ATP-dependent RNA
helicase DeaD - Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA)
Length = 608
Score = 72.9 bits (171), Expect = 8e-12
Identities = 34/76 (44%), Positives = 49/76 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D I ++ L + +K FVLDEADEML GF D I + + + Q+ L SAT
Sbjct: 136 VGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIALFSAT 195
Query: 691 MPDDVLEVSRCFMRDP 738
MP+ + ++++ F+ P
Sbjct: 196 MPNVIKKIAKQFLNQP 211
Score = 63.3 bits (147), Expect = 6e-09
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+D+I QAQ+GTGKTA F + +L +I+ +I Q LILAPTRELA Q+ + V +
Sbjct: 50 KDIIGQAQTGTGKTAAFVLPLLDKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKG 109
Query: 437 -KCHACIGGTNVREDIRQLESGVH 505
GG + +R L+ GVH
Sbjct: 110 FHVLPIYGGQSYDIQLRPLKRGVH 133
>UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6;
Proteobacteria|Rep: ATP-independent RNA helicase -
Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 460
Score = 72.5 bits (170), Expect = 1e-11
Identities = 33/76 (43%), Positives = 48/76 (63%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D + +++L +++K+ VLDEAD ML GF D I DV +D Q +L SAT
Sbjct: 128 VGTPGRIQDHLRKQSLALDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFSAT 187
Query: 691 MPDDVLEVSRCFMRDP 738
P ++ ++S R P
Sbjct: 188 YPQEIEQISARVQRQP 203
Score = 56.4 bits (130), Expect = 7e-07
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
DV A+A++G+GKTA F I +L +I S QAL+L PTRELA Q+ K + L N
Sbjct: 43 DVRAKAKTGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNI 102
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
K GG + + + L H+
Sbjct: 103 KILTLCGGQPMGQQLDSLVHAPHI 126
>UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1;
Flavobacteria bacterium BBFL7|Rep: ATP-dependent RNA
helicase - Flavobacteria bacterium BBFL7
Length = 644
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/84 (46%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
D I AQ+GTGKTA F + +L ID + RE QALILAPTRELAQQI + + HL
Sbjct: 53 DFIGLAQTGTGKTAAFGLPLLDLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKL 112
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
GG N+ IR + G +
Sbjct: 113 NVVPVFGGANIMNQIRDIRRGAQI 136
Score = 60.5 bits (140), Expect = 4e-08
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ RR + + +K VLDEADEML+ GFK+ I + + L SAT
Sbjct: 138 VATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKSDTGRNIWLFSAT 197
Query: 691 MPDDVLEVSRCFMRDP 738
M ++ + +M P
Sbjct: 198 MAREIKRIVDTYMVQP 213
>UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Chromohalobacter salexigens DSM 3043|Rep: DEAD/DEAH box
helicase-like protein - Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 568
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +2
Query: 242 ALHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 421
AL RDV+ QAQ+GTGKTA F++ +L ++D RE Q L+LAPTRELAQQ+ + G
Sbjct: 42 ALLEGRDVLGQAQTGTGKTAAFALPLLSRLDLQRREPQVLVLAPTRELAQQVAASFVQYG 101
Query: 422 DHLNA-KCHACIGGTNVREDIRQLESGVHV 508
+ + + GG RE + L G V
Sbjct: 102 RGVKGLEVLSLCGGQEYREQLSGLRRGAQV 131
Score = 66.9 bits (156), Expect = 5e-10
Identities = 32/77 (41%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D + R +L + + VLDEADEML GF D + V D Q + SAT
Sbjct: 133 VGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRVFFSAT 192
Query: 691 MPDDVLEVSRCFMRDPV 741
+PD++ + ++ DP+
Sbjct: 193 LPDEISRIVNHYLVDPL 209
>UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3;
Thermoplasma|Rep: ATP-dependent RNA helicase -
Thermoplasma volcanium
Length = 373
Score = 72.5 bits (170), Expect = 1e-11
Identities = 33/75 (44%), Positives = 49/75 (65%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR D+I R L+ + + FVLDEADEML GF + I + +L + Q L SAT
Sbjct: 124 VGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPVERQSFLFSAT 183
Query: 691 MPDDVLEVSRCFMRD 735
+P +++E+++ FM +
Sbjct: 184 IPSEIIELAKGFMHN 198
Score = 53.6 bits (123), Expect = 5e-06
Identities = 28/83 (33%), Positives = 47/83 (56%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D++ ++++G+GKTA + I I+ + +ALIL PTRELA Q+ KV ALG +
Sbjct: 41 DLVVRSKTGSGKTAAYLIPIINNTAKE-KGIRALILLPTRELAVQVAKVSEALGKRSGIR 99
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
GG ++ + I + G ++
Sbjct: 100 TVVVYGGVSINKQIELILRGANI 122
>UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular
organisms|Rep: Predicted helicase - Methanosphaera
stadtmanae (strain DSM 3091)
Length = 583
Score = 72.5 bits (170), Expect = 1e-11
Identities = 32/76 (42%), Positives = 50/76 (65%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGRV D I R L N IK +LDEADEML GF++ I + + + + Q +L SAT
Sbjct: 128 IGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFLLFSAT 187
Query: 691 MPDDVLEVSRCFMRDP 738
+P ++L++++ + +P
Sbjct: 188 LPQEILQLAQRYQTNP 203
Score = 64.9 bits (151), Expect = 2e-09
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
+DV QAQ+GTGKTA F I +L+ ID+ QA+IL PTRELA Q+ + + L +L
Sbjct: 42 KDVTGQAQTGTGKTAAFGIPLLENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPK 101
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
GG + I+ L+ GV +
Sbjct: 102 IDVLPVYGGQPIDRQIKALQKGVQI 126
>UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=7; Bacteria|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Geobacillus kaustophilus
Length = 467
Score = 72.5 bits (170), Expect = 1e-11
Identities = 34/76 (44%), Positives = 46/76 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I R L + VLDEADEML+ GF + I + + A+ Q +L SAT
Sbjct: 125 VGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSAT 184
Query: 691 MPDDVLEVSRCFMRDP 738
MPD + ++ FM +P
Sbjct: 185 MPDPIRRIAERFMNEP 200
Score = 69.7 bits (163), Expect = 7e-11
Identities = 34/84 (40%), Positives = 51/84 (60%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+DVI QAQ+GTGKTA F I I+++++ QAL++APTRELA Q+ + + +G
Sbjct: 40 KDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRV 99
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ GG ++ IR L+ HV
Sbjct: 100 RVLPIYGGQDIERQIRALKKHPHV 123
>UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=30; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 481
Score = 72.1 bits (169), Expect = 1e-11
Identities = 35/76 (46%), Positives = 46/76 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D I + L +K V+DEADEML+ GF DQ+ + L +L SAT
Sbjct: 127 VGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSAT 186
Query: 691 MPDDVLEVSRCFMRDP 738
+P+DV +SR +M P
Sbjct: 187 LPEDVERLSRTYMNAP 202
Score = 58.0 bits (134), Expect = 2e-07
Identities = 26/85 (30%), Positives = 50/85 (58%)
Frame = +2
Query: 254 RRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 433
++D++ ++Q+G+GKTA+F I + + ++ + QAL+L PTRELA Q+++ + +G
Sbjct: 41 KKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKR 100
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
K A G + +L+ H+
Sbjct: 101 IKAAAIYGKSPFARQKLELKQKTHI 125
>UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15;
Cyanobacteria|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 624
Score = 72.1 bits (169), Expect = 1e-11
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Frame = +2
Query: 209 KTFCNPATRNNALHPR----RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 376
K + +P+ A P RD++ QAQ+GTGKTA F++ +L+++++ + Q L+LAPT
Sbjct: 89 KGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLESGQKTPQVLVLAPT 148
Query: 377 RELAQQIQKVVIA-LGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
RELA Q+ A H + K A GGT+ R I L GV V
Sbjct: 149 RELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGVDV 193
Score = 70.9 bits (166), Expect = 3e-11
Identities = 34/80 (42%), Positives = 49/80 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D + + L + + VLDEADEML GF D + + + L + QV+L SAT
Sbjct: 195 VGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFSAT 254
Query: 691 MPDDVLEVSRCFMRDPVPHT 750
MP ++ +S+ ++ DP T
Sbjct: 255 MPPEIRRLSKRYLNDPAEVT 274
>UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein;
n=5; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella frigidimarina (strain NCIMB
400)
Length = 421
Score = 72.1 bits (169), Expect = 1e-11
Identities = 35/76 (46%), Positives = 48/76 (63%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ +RAL + + V DEAD ML GFKD+I +V K L + Q +L SAT
Sbjct: 138 VATPGRLLDLLRKRALSLSQLTHLVFDEADRMLDMGFKDEIVEVLKRLPSTRQTLLFSAT 197
Query: 691 MPDDVLEVSRCFMRDP 738
+ D +L SR +R P
Sbjct: 198 LDDRMLSFSRRLLRSP 213
Score = 56.8 bits (131), Expect = 6e-07
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI-----------DT---SIRECQALILAPTRELAQQ 394
+DV+A AQ+GTGKTA F++ +L Q+ DT + AL+L PTRELAQQ
Sbjct: 39 KDVMAGAQTGTGKTAAFALPLLHQLLTHQDNLAAQPDTQHINSTPITALVLVPTRELAQQ 98
Query: 395 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ + + GG ++ E IRQL +G H+
Sbjct: 99 VHSSIEQYAYGSSVTSVMVYGGVSIGEQIRQLANGTHI 136
>UniRef50_A6G4U7 Cluster: DEAD/DEAH box helicase; n=2; Plesiocystis
pacifica SIR-1|Rep: DEAD/DEAH box helicase -
Plesiocystis pacifica SIR-1
Length = 1390
Score = 72.1 bits (169), Expect = 1e-11
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D I R++L + ++ VLDE DEMLS GF + I + + + Q L SAT
Sbjct: 283 VGTPGRVLDHIRRKSLDLSKVRTVVLDECDEMLSMGFLEDIRAILRACPKERQTCLFSAT 342
Query: 691 MPDDVLEVSRCFMRDP 738
+P D+ ++R MR+P
Sbjct: 343 VPRDIARIARRDMREP 358
Score = 48.4 bits (110), Expect = 2e-04
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISIL----QQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 427
DV+ Q+Q+G+GKT F + L Q D + Q ++L PTRELA+Q+ ++ L
Sbjct: 195 DVLVQSQTGSGKTGAFCLPWLANRFQPGDAAETGVQLIVLLPTRELAKQVCNELVRLAIE 254
Query: 428 LNAKCHACIGGTNVREDIRQLESGVH 505
GGT + + L GVH
Sbjct: 255 TPVDVLPVYGGTAMNPQLDALARGVH 280
>UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Rhodobacteraceae|Rep: DEAD/DEAH box helicase domain
protein - Dinoroseobacter shibae DFL 12
Length = 508
Score = 72.1 bits (169), Expect = 1e-11
Identities = 33/76 (43%), Positives = 49/76 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ R+AL + + VLDEAD+ML GF + + +L A+ Q +L SAT
Sbjct: 199 VATPGRLIDLLDRKALRLSETRFLVLDEADQMLDLGFIHALRKIAPLLPAERQTMLFSAT 258
Query: 691 MPDDVLEVSRCFMRDP 738
MP + E+SR ++ DP
Sbjct: 259 MPKQMEELSRAYLTDP 274
Score = 59.3 bits (137), Expect = 1e-07
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALG 421
RDV+ AQ+GTGKTA F + +L + + R C+ LILAPTREL QI + + A
Sbjct: 109 RDVLGIAQTGTGKTAAFGLPLLDALMKAGTKPAPRTCRGLILAPTRELVSQICESLRAFT 168
Query: 422 DHLNAKCHACIGGTNVREDIRQLESG 499
+ + K +GG + I++ E G
Sbjct: 169 EGSHLKLQVIVGGVAIGPQIKRAERG 194
>UniRef50_Q6BFH3 Cluster: Nucleolar RNA helicase II, putative; n=3;
Paramecium tetraurelia|Rep: Nucleolar RNA helicase II,
putative - Paramecium tetraurelia
Length = 664
Score = 72.1 bits (169), Expect = 1e-11
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQVI 675
C VGTPGR+ D++ R+ L + I++ VLDEAD+ML+ GF++ I + + +Q++
Sbjct: 149 CEIVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNERKIQML 208
Query: 676 LLSATMPDDVLEVSRCFMRDPVPH 747
L SAT+PD V E+S +M H
Sbjct: 209 LFSATIPDWVKELSHKYMEANTKH 232
Score = 44.4 bits (100), Expect = 0.003
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQI-DTSIRECQ---ALILAPTRELAQQI-QKVVIALGD 424
D+I Q ++G+GKT + + IL++I +++ + L+L PTRELA Q+ + L
Sbjct: 64 DIIGQDRTGSGKTLAYCLPILERIRGLGLKQNKNPYVLVLLPTRELAIQVTTEFNTILHK 123
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
+ ++ GGT++R I Q+ G +
Sbjct: 124 ENEYRIYSIYGGTDLRNQIDQVRQGCEI 151
>UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10;
Rickettsia|Rep: ATP-dependent RNA helicase RhlE -
Rickettsia conorii
Length = 414
Score = 71.7 bits (168), Expect = 2e-11
Identities = 32/77 (41%), Positives = 50/77 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D + R +L + I + VLDE D ML G K+Q+ ++ K L QV++ SAT
Sbjct: 124 IGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSAT 183
Query: 691 MPDDVLEVSRCFMRDPV 741
MP ++ VS+ ++ +PV
Sbjct: 184 MPKHIIAVSQKYLNNPV 200
Score = 44.8 bits (101), Expect = 0.002
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHLNA 436
D++A +Q+G+GKT + +L ID+ I+ + ALIL PTRELA QI + +
Sbjct: 42 DILASSQTGSGKTLAY---LLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTTSYKI 98
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
IGG + + QL+ V
Sbjct: 99 NSAVLIGGEPMPKQFIQLKKNPKV 122
>UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4;
Legionella pneumophila|Rep: ATP-dependent RNA helicase -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 589
Score = 71.7 bits (168), Expect = 2e-11
Identities = 32/76 (42%), Positives = 47/76 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I + L N +K F+LDEADEML GF + + + + L Q+ L SAT
Sbjct: 130 VGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMALFSAT 189
Query: 691 MPDDVLEVSRCFMRDP 738
MP + +++ ++ DP
Sbjct: 190 MPYRIRQIANTYLNDP 205
Score = 68.9 bits (161), Expect = 1e-10
Identities = 39/85 (45%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LN 433
RD IA AQ+GTGKTA F++ ILQ + I QALILAPTRELA Q+ + L + N
Sbjct: 44 RDAIALAQTGTGKTAAFALPILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRN 103
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
GG ++QL SG V
Sbjct: 104 VTIAVLCGGQEYGRQLKQLRSGAQV 128
>UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6;
Xanthomonas|Rep: ATP-dependent RNA helicase -
Xanthomonas oryzae pv. oryzae
Length = 482
Score = 71.7 bits (168), Expect = 2e-11
Identities = 32/80 (40%), Positives = 49/80 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ ++ +RALH ++ VLDEAD ML GF++ I ++ Q +L SAT
Sbjct: 151 VGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQSLLFSAT 210
Query: 691 MPDDVLEVSRCFMRDPVPHT 750
PD + ++R ++DP+ T
Sbjct: 211 FPDIIRTLAREILKDPIEIT 230
Score = 65.7 bits (153), Expect = 1e-09
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
DVIAQA +G+GKTA F + +LQ++D ++ QAL+L PTRELA Q+ K + L + N
Sbjct: 65 DVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNM 124
Query: 437 KCHACIGGTNVREDIRQLES 496
K GG + + LE+
Sbjct: 125 KLVVLTGGMPLGPQLASLEA 144
>UniRef50_A4RW46 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 654
Score = 71.7 bits (168), Expect = 2e-11
Identities = 34/78 (43%), Positives = 51/78 (65%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C +GTPGR+ D + R+ L + +K VLDEADEML+ GF D + + K S DVQ +L
Sbjct: 213 CDVVIGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVDDVELILKS-SGDVQTLL 271
Query: 679 LSATMPDDVLEVSRCFMR 732
SAT+P V ++++ F++
Sbjct: 272 FSATLPPWVKDIAKRFLK 289
Score = 41.9 bits (94), Expect = 0.017
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQID-----------TSIRECQALILAPTRELAQQIQK 403
+DV+ +A++G GKT F + I++++ R ++LAPTRELA+Q+
Sbjct: 121 KDVVGRARTGCGKTLAFVLPIVEEMAKISPMPANGRRVQGRRPMCVVLAPTRELAKQVFA 180
Query: 404 VVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+G+ K GGT RE L G V
Sbjct: 181 DFDWIGNSFGFKSVCVYGGTPYREQEMGLRGGCDV 215
>UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
eIF4A - Encephalitozoon cuniculi
Length = 425
Score = 71.7 bits (168), Expect = 2e-11
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS--ADVQVILLS 684
VGTPGRV MI L + IKLFV+DEADEML GF++Q+ +F+ ++ +VQ+ + S
Sbjct: 161 VGTPGRVEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDEVQIAMFS 220
Query: 685 ATMPDDVLEVSRCFMRDPV 741
AT ++ L VS + +PV
Sbjct: 221 ATYDEEELRVSEEILINPV 239
Score = 60.1 bits (139), Expect = 6e-08
Identities = 35/84 (41%), Positives = 46/84 (54%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RD+ AQAQSGTGKT F+++ LQ D S Q L+LA TRE+A Q LG + A
Sbjct: 76 RDIRAQAQSGTGKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGCFMGA 135
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ GG+ + D LE H+
Sbjct: 136 RVALLSGGSPIAADKVALEKKPHI 159
Score = 49.6 bits (113), Expect = 8e-05
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +3
Query: 120 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 251
D+ ++ +T++D LKE+LL+GIY+ GFE PS IQ+ AI P I
Sbjct: 30 DSSQIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPII 73
>UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9;
Firmicutes|Rep: ATP-dependent RNA helicase dbpA -
Bacillus subtilis
Length = 479
Score = 71.7 bits (168), Expect = 2e-11
Identities = 33/76 (43%), Positives = 50/76 (65%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D I + L + + V+DEADEML+ GF +Q+ + K L + +L SAT
Sbjct: 125 VGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSAT 184
Query: 691 MPDDVLEVSRCFMRDP 738
+P D+ ++SR +M++P
Sbjct: 185 LPQDIEKLSRQYMQNP 200
Score = 58.0 bits (134), Expect = 2e-07
Identities = 28/85 (32%), Positives = 51/85 (60%)
Frame = +2
Query: 254 RRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 433
R+D++ ++Q+G+GKTA+F I + + + + QALIL PTRELA Q+++ + +G
Sbjct: 39 RKDLVVKSQTGSGKTASFGIPLCELANWDENKPQALILTPTRELAVQVKEDITNIGRFKR 98
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
K A G ++ + +L+ H+
Sbjct: 99 IKATAVFGKSSFDKQKAELKQKSHI 123
>UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Bacteroides
thetaiotaomicron
Length = 647
Score = 71.3 bits (167), Expect = 2e-11
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +2
Query: 245 LHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 424
L DV+A AQ+GTGKTA F + +LQQID R Q+LIL PTREL QI +
Sbjct: 37 LGENNDVVALAQTGTGKTAAFGLPLLQQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSK 96
Query: 425 HLNA-KCHACIGGTNVREDIRQLESGVHV 508
+++ K GG+++ IR L+ GVH+
Sbjct: 97 YIDGLKVLPVYGGSSIDSQIRSLKRGVHI 125
Score = 61.7 bits (143), Expect = 2e-08
Identities = 26/75 (34%), Positives = 48/75 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ R+ + +T+ V+DEADEML+ GF D I+ + + + +L SAT
Sbjct: 127 VATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNTLLFSAT 186
Query: 691 MPDDVLEVSRCFMRD 735
M ++ +S+ ++++
Sbjct: 187 MSPEIARISKNYLQN 201
>UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4;
Clostridiales|Rep: ATP-dependent RNA helicase -
Clostridium tetani
Length = 386
Score = 71.3 bits (167), Expect = 2e-11
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH--L 430
+DVI Q+ +G+GKT + + I Q+IDTS RE QA+ILAPT ELA QI K + L + +
Sbjct: 41 KDVIGQSPTGSGKTLAYLLPIFQKIDTSKREMQAIILAPTHELAMQINKEIQLLSGNSKV 100
Query: 431 NAKCHACIGGTNVREDIRQLESGVHV 508
+ IG NV+ I +L+ HV
Sbjct: 101 SVTSTPIIGNANVKRQIEKLKEKPHV 126
Score = 58.4 bits (135), Expect = 2e-07
Identities = 27/75 (36%), Positives = 46/75 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VG+ GR+ ++I ++ + A+TIK V+DE D++L I DV K D Q+++ SAT
Sbjct: 128 VGSSGRILELIKKKKISAHTIKTIVVDEGDKLLDHSNLSSIKDVIKTTMRDRQLMVFSAT 187
Query: 691 MPDDVLEVSRCFMRD 735
+ + L V++ M+D
Sbjct: 188 INEKTLNVAKGLMKD 202
>UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 656
Score = 71.3 bits (167), Expect = 2e-11
Identities = 32/83 (38%), Positives = 51/83 (61%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D I A +GTGKTA F I +++ ID+++++ QAL+L+PTRELA Q+ + + LG +
Sbjct: 84 DFIGLASTGTGKTAAFGIPLIENIDSTVKDTQALVLSPTRELALQVAEQLTLLGKKKGVR 143
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
GG + R I ++ G H+
Sbjct: 144 VVTIYGGASYRTQIDGIKRGAHI 166
Score = 54.0 bits (124), Expect = 4e-06
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD--------V 666
V TPGR+ D + ++ + ++K VLDEADEMLS GFK+ + + D
Sbjct: 168 VATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSDSVRAAC 227
Query: 667 QVILLSATMPDDVLEVSRCFMRDP 738
+ L SATM +V ++ ++ +P
Sbjct: 228 RTWLFSATMSSEVRRLTSTYLENP 251
>UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=5;
Bacteria|Rep: Possible ATP-dependent RNA helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 388
Score = 71.3 bits (167), Expect = 2e-11
Identities = 30/77 (38%), Positives = 54/77 (70%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D++ +A++ + +++ VLDEAD+ML+ GFK+++ ++FK+L Q +L SAT
Sbjct: 137 IATPGRLLDLVDSKAVYLSDVEVLVLDEADKMLNLGFKEEMANIFKLLPQKRQNLLFSAT 196
Query: 691 MPDDVLEVSRCFMRDPV 741
+ DV ++ + DPV
Sbjct: 197 LGKDVDTITEFLLHDPV 213
Score = 56.0 bits (129), Expect = 1e-06
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDT----SIRECQALILAPTRELAQQIQKVVIALGD 424
+D++ AQ+G+GKTA+F + ILQ + T R AL+L PTRELA Q+ +V A +
Sbjct: 47 KDILGIAQTGSGKTASFVLPILQMLQTKPLGKNRHINALVLVPTRELAVQVGQVFQAFSN 106
Query: 425 HL--NAKCHACIGGTNVREDIRQLESGVHV 508
L K A GG ++ + QL+ GV +
Sbjct: 107 ALPNKIKSLAVYGGVSINPQMIQLQ-GVEI 135
>UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3;
Proteobacteria|Rep: ATP-dependent RNA helicase DbpA -
Alteromonas macleodii 'Deep ecotype'
Length = 459
Score = 71.3 bits (167), Expect = 2e-11
Identities = 34/81 (41%), Positives = 49/81 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D + +R + +KL VLDEAD ML GF+D + +F VQ +L SAT
Sbjct: 128 VGTPGRVMDHVEKRRIDLRNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLLFSAT 187
Query: 691 MPDDVLEVSRCFMRDPVPHTC 753
+ + V++ ++ +PV TC
Sbjct: 188 FTEQIERVAKQYLHNPV--TC 206
Score = 60.5 bits (140), Expect = 4e-08
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDHLN 433
+DVI QAQ+G+GKT F I L++I+ + QA++L PTRELA+Q+ Q+ A D N
Sbjct: 42 KDVIGQAQTGSGKTLCFVIPALEKIEVNDFSTQAIMLCPTRELAEQVAQQCRSAAKDIGN 101
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
K GG + I+ L+ H+
Sbjct: 102 IKVTTLCGGQPMGPQIQSLKHSPHI 126
>UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1;
Clostridium cellulolyticum H10|Rep: DEAD/DEAH box
helicase-like - Clostridium cellulolyticum H10
Length = 542
Score = 71.3 bits (167), Expect = 2e-11
Identities = 34/80 (42%), Positives = 47/80 (58%)
Frame = +1
Query: 502 SCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 681
S GTPGRV+D I+ L I+ VLDEAD ML GF DQ+ + K L + +L
Sbjct: 123 SIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITLLF 182
Query: 682 SATMPDDVLEVSRCFMRDPV 741
SATMP ++ + + +M +PV
Sbjct: 183 SATMPPEIHNICKRYMNNPV 202
Score = 56.8 bits (131), Expect = 6e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D+I +++G+GKTA F +SILQ + Q LIL P RELA Q+ + + +L K
Sbjct: 42 DLIVMSKTGSGKTAVFGVSILQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKHK 101
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
A G N+ + + L GV +
Sbjct: 102 TTAIYGQHNINLETQILNKGVSI 124
>UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein;
n=3; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 478
Score = 71.3 bits (167), Expect = 2e-11
Identities = 33/80 (41%), Positives = 46/80 (57%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C C TPGR D+I L K+ VLDEAD+MLS F +Q++D+ + DVQ++L
Sbjct: 217 CIC---TPGRALDLIVSGHLRVQNFKMAVLDEADQMLSDNFIEQVNDIMEYFPEDVQILL 273
Query: 679 LSATMPDDVLEVSRCFMRDP 738
SAT+ + + FM DP
Sbjct: 274 FSATISQSIFHIMNTFMNDP 293
Score = 69.3 bits (162), Expect = 1e-10
Identities = 35/58 (60%), Positives = 41/58 (70%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 430
R VIAQAQSGTGKT FSI +L +ID S + QAL+LAPTRELA QI V +G +
Sbjct: 131 RHVIAQAQSGTGKTGAFSIGVLSKIDVSQKTTQALVLAPTRELATQIFNVFKEIGSRI 188
Score = 46.4 bits (105), Expect = 8e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 81 SYDG-PPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
SY+ P D +W V+ FD M+L LL+G+Y+YGF PS IQ AI
Sbjct: 69 SYEAMTPAQDDPNFIPNWTTRVDDFDQMDLPPALLQGVYSYGFRAPSEIQAIAI 122
>UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 1117
Score = 70.9 bits (166), Expect = 3e-11
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +2
Query: 251 PRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 430
P +D+I QA+SGTGKT FS+ L+ ID + Q LILAPTRE+A QIQ + A+G +
Sbjct: 2 PVQDLIVQAKSGTGKTCVFSVIALEGIDLTNPSTQVLILAPTREIAVQIQDTIRAIGCEM 61
Query: 431 NA-KCHACIGGTNVREDIRQLE 493
+ H IGGT D ++L+
Sbjct: 62 EGLRSHVFIGGTLFGPDRQKLK 83
Score = 70.9 bits (166), Expect = 3e-11
Identities = 33/81 (40%), Positives = 53/81 (65%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C VGTPGR+ +I L TI+LFVLDEAD++L F++Q++ ++ LS + Q++
Sbjct: 85 CHIAVGTPGRIKQLIEYEVLKTGTIRLFVLDEADKLLDDTFQEQVNWIYNHLSDNKQMLA 144
Query: 679 LSATMPDDVLEVSRCFMRDPV 741
LSAT P+ + + +MR+P+
Sbjct: 145 LSATYPEYLAKHLTKYMREPM 165
>UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1;
Aquifex aeolicus|Rep: ATP-dependent RNA helicase DeaD -
Aquifex aeolicus
Length = 293
Score = 70.9 bits (166), Expect = 3e-11
Identities = 32/76 (42%), Positives = 47/76 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D+I R AL + ++ FVLDE D ML FK+ I ++ L + QV +SAT
Sbjct: 93 IGTPGRIKDLIERGALKTDDVRYFVLDEVDVMLDMNFKEDIDFIYSQLPEEKQVFFVSAT 152
Query: 691 MPDDVLEVSRCFMRDP 738
P +V E+S + + P
Sbjct: 153 FPKEVRELSHRYTKKP 168
Score = 62.5 bits (145), Expect = 1e-08
Identities = 36/81 (44%), Positives = 47/81 (58%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RD + QA++GTGKTA F + IL + + ALILAPTRELA QI+ +LN
Sbjct: 10 RDCLIQAKTGTGKTAAFGLPILNSLKEGEK---ALILAPTRELALQIRDNFRDFARYLNV 66
Query: 437 KCHACIGGTNVREDIRQLESG 499
+ A GGT V D++ L G
Sbjct: 67 RTFAFYGGTKVFGDLKVLRGG 87
>UniRef50_Q1J0S9 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Deinococcus|Rep: DEAD/DEAH box helicase-like protein -
Deinococcus geothermalis (strain DSM 11300)
Length = 591
Score = 70.9 bits (166), Expect = 3e-11
Identities = 35/77 (45%), Positives = 50/77 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D + R L + I+ VLDEADEMLS GF D I + + A Q +L SAT
Sbjct: 129 VGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPAARQTMLFSAT 188
Query: 691 MPDDVLEVSRCFMRDPV 741
+ D++ ++R ++R+PV
Sbjct: 189 LNDEIHRLARKYLREPV 205
Score = 42.3 bits (95), Expect = 0.013
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDT----SIRE----CQALILAPTRELAQQIQKVVI 412
+D+I +A++GTGKT F++ I+Q + RE +A+++APTRELA+Q+ +
Sbjct: 38 KDLIGRARTGTGKTLAFALPIIQNLTAPDGRGSRERGRLPRAIVIAPTRELAKQVAEEFS 97
Query: 413 ALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
G L+ GG L GV V
Sbjct: 98 KSGPQLSTV--TVYGGAAYGPQENALRRGVDV 127
>UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Fervidobacterium nodosum Rt17-B1|Rep: DEAD/DEAH box
helicase domain protein - Fervidobacterium nodosum
Rt17-B1
Length = 571
Score = 70.9 bits (166), Expect = 3e-11
Identities = 32/82 (39%), Positives = 51/82 (62%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D + R L + ++ VLDEAD ML GF D + ++ K + + L SAT
Sbjct: 143 VGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTFLFSAT 202
Query: 691 MPDDVLEVSRCFMRDPVPHTCT 756
MP ++++++R FM++ + H T
Sbjct: 203 MPKEIVDIARKFMKEYI-HVST 223
Score = 68.1 bits (159), Expect = 2e-10
Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +2
Query: 242 ALHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIAL 418
AL +D+IAQAQ+GTGKTA F I +L++ID + +A+I+ PTRELA QI + + +L
Sbjct: 52 ALSTDKDLIAQAQTGTGKTAAFGIPLLERIDFKANKFVKAIIVTPTRELALQIFEELKSL 111
Query: 419 GDHLNAKCHACIGGTNVREDIRQLESGVHV 508
K GG ++ + + LE GV +
Sbjct: 112 KGTKRVKITTLYGGQSLEKQFKDLEKGVDI 141
Score = 33.5 bits (73), Expect = 5.9
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 144 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 245
E F+D L EE+L I G+EKP+ I Q+ ++P
Sbjct: 18 ERFEDFGLSEEILLAIQKKGYEKPTEI-QKIVLP 50
>UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Clostridiaceae|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 549
Score = 70.9 bits (166), Expect = 3e-11
Identities = 35/85 (41%), Positives = 52/85 (61%)
Frame = +2
Query: 254 RRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 433
+RDV+AQAQ+GTGKT F + IL++++ QALI+ PTRELA QI L +
Sbjct: 40 QRDVMAQAQTGTGKTLAFILPILERVNVEKPTIQALIITPTRELAIQITAETKKLAEVKG 99
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
A GG +V + +R+L+ +H+
Sbjct: 100 INILAAYGGQDVEQQLRKLKGSIHI 124
Score = 66.5 bits (155), Expect = 7e-10
Identities = 29/77 (37%), Positives = 47/77 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D + R+ ++ + + VLDEAD+ML GF + D+ + Q + SAT
Sbjct: 126 IGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNMFFSAT 185
Query: 691 MPDDVLEVSRCFMRDPV 741
MP+ V ++ +M+DPV
Sbjct: 186 MPNQVRTLAEQYMKDPV 202
>UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4;
Saccharomycetaceae|Rep: ATP-dependent rRNA helicase RRP3
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 504
Score = 70.9 bits (166), Expect = 3e-11
Identities = 36/84 (42%), Positives = 53/84 (63%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+D++ A++G+GKTA F+I ILQ + T+ + AL+LAPTRELA QI++ ALG +
Sbjct: 136 KDIVGIAETGSGKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKETFDALGSSMGL 195
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ IGG ++ E R L HV
Sbjct: 196 RSVCIIGGMSMMEQARDLMRKPHV 219
>UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1;
Salinibacter ruber DSM 13855|Rep: ATP-dependent RNA
helicase - Salinibacter ruber (strain DSM 13855)
Length = 478
Score = 70.5 bits (165), Expect = 4e-11
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D I + A+T+++ VLDEADEMLS GF + D+ + + D + SAT
Sbjct: 168 IGTPGRILDHIKKDNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYMYSAT 227
Query: 691 MPDDVLEVSRCFMRDP 738
MP V V+R F+ DP
Sbjct: 228 MPPKVRSVAREFLDDP 243
Score = 52.0 bits (119), Expect = 2e-05
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI----QKVVIALGD 424
RD+I Q+Q+G+GKT F + + ++ E Q LIL PTRELA+QI +++ IA
Sbjct: 79 RDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQVLILTPTRELARQIHEEFEQMKIATPR 138
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
+ GG + I L++G V
Sbjct: 139 TNRMEAVLIYGGVGYQPQIDGLKNGAQV 166
>UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Oceanobacter sp. RED65
Length = 614
Score = 70.5 bits (165), Expect = 4e-11
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LN 433
+DV+ AQ+GTGKTA F++ +L + +RE Q L+LAPTRELAQQ+ V + H N
Sbjct: 44 KDVLGLAQTGTGKTAAFTLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESN 103
Query: 434 AKCHACIGGTNVREDIRQLESG 499
K + GG++ R L+ G
Sbjct: 104 VKVASIYGGSDFGSQFRALKQG 125
Score = 66.1 bits (154), Expect = 9e-10
Identities = 35/76 (46%), Positives = 43/76 (56%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D I R L I+ VLDEADEML GF D + V + Q+ L SAT
Sbjct: 130 VGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIALFSAT 189
Query: 691 MPDDVLEVSRCFMRDP 738
MP + V+ +R+P
Sbjct: 190 MPKQIKAVAEKHLREP 205
>UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein;
n=12; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Roseiflexus sp. RS-1
Length = 467
Score = 70.5 bits (165), Expect = 4e-11
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHLN 433
RDVI AQ+GTGKTA F + ILQ++ R +A+I+ PTRELA+QIQ V+ ALG +
Sbjct: 39 RDVIGIAQTGTGKTAAFVLPILQRLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYTG 98
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
+ GG + I++L GV +
Sbjct: 99 LRSVTLYGGVGYQGQIQRLRRGVEI 123
Score = 58.0 bits (134), Expect = 2e-07
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +1
Query: 520 PGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD 699
PGR+ D + R L + + +LDEAD+M GF + + ++ A Q +L SATMPD
Sbjct: 128 PGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTMLFSATMPD 187
Query: 700 DVLEVSRCFMRDP 738
+ ++R +R+P
Sbjct: 188 AIRALAREALREP 200
>UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n=2;
Bacteria|Rep: Superfamily II DNA and RNA helicases -
Syntrophus aciditrophicus (strain SB)
Length = 572
Score = 70.1 bits (164), Expect = 6e-11
Identities = 31/77 (40%), Positives = 50/77 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR++D+I R A+ + + VLDEADEML GF+D+++ + + +L SAT
Sbjct: 127 VATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKNTLLFSAT 186
Query: 691 MPDDVLEVSRCFMRDPV 741
MP +V ++ +M+DP+
Sbjct: 187 MPREVAAIAANYMKDPL 203
Score = 62.9 bits (146), Expect = 8e-09
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +2
Query: 245 LHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 424
L+ + D++ AQ+GTGKTA F I ++Q DT ++ QAL+L PTREL Q+ + +G
Sbjct: 37 LNRQTDLVGLAQTGTGKTAAFGIPLIQLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGR 96
Query: 425 HL-NAKCHACIGGTNVREDIRQLESGVHV 508
++ K GG ++ +L G V
Sbjct: 97 YVQKLKIVPVYGGASIVSQTEELRKGAQV 125
>UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: ATP-dependent RNA helicase
- Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469)
Length = 580
Score = 70.1 bits (164), Expect = 6e-11
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+D+ QAQ+GTGKTA F I ++ +D SI + Q+LIL PTRELA Q+ + L
Sbjct: 39 KDLTGQAQTGTGKTAAFGIPAIEHVDISINQTQSLILCPTRELALQVCTELKKLSKFKKG 98
Query: 437 -KCHACIGGTNVREDIRQLESGVHV 508
+ A GG ++ IR L++G H+
Sbjct: 99 LRVLAVYGGESIERQIRDLKAGAHI 123
Score = 69.7 bits (163), Expect = 7e-11
Identities = 31/76 (40%), Positives = 49/76 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D + RR L+A+ + +LDEADEML+ GF++ I + L + Q +L SAT
Sbjct: 125 VGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLFSAT 184
Query: 691 MPDDVLEVSRCFMRDP 738
+ +L +++ F +P
Sbjct: 185 LAPPILALAKRFQNNP 200
>UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellular
organisms|Rep: ATP-dependent RNA helicase -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 778
Score = 70.1 bits (164), Expect = 6e-11
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D + + +L + IK VLDEADEML GF D + + + Q L SAT
Sbjct: 131 VGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTALFSAT 190
Query: 691 MPDDVLEVSRCFMRDP 738
MP + ++ ++RDP
Sbjct: 191 MPSAIKRIATTYLRDP 206
Score = 64.1 bits (149), Expect = 4e-09
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
RDV+ QAQ+GTGKTA+F++ IL +ID QAL+LAPTRELA Q+ + ++
Sbjct: 45 RDVLGQAQTGTGKTASFALPILARIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPG 104
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
GG + + L GVHV
Sbjct: 105 FHVLPIYGGQSYGAQLSALRRGVHV 129
>UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog;
n=31; Bacteria|Rep: Cold-shock DEAD box protein A
homolog - Mycobacterium tuberculosis
Length = 563
Score = 70.1 bits (164), Expect = 6e-11
Identities = 34/81 (41%), Positives = 46/81 (56%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D + R L + + VLDEADEML+ GF D + + QV L SAT
Sbjct: 137 VGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSAT 196
Query: 691 MPDDVLEVSRCFMRDPVPHTC 753
MP + ++S ++ DP TC
Sbjct: 197 MPPAIRKLSAKYLHDPFEVTC 217
Score = 59.7 bits (138), Expect = 8e-08
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +2
Query: 242 ALHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 421
AL DV+ AQ+GTGKTA F+I +L +ID + + QAL+L PTRELA Q+ + G
Sbjct: 46 ALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYG 105
Query: 422 DHLN-AKCHACIGGTNVREDIRQLESGVHV 508
+L+ GG++ + L G V
Sbjct: 106 AYLSQLNVLPIYGGSSYAVQLAGLRRGAQV 135
>UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 722
Score = 69.7 bits (163), Expect = 7e-11
Identities = 34/77 (44%), Positives = 48/77 (62%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D+I + AL + +++ VLDEADEML GF + + + D L SAT
Sbjct: 169 VGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTALFSAT 228
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + +V+R ++DPV
Sbjct: 229 MPAAIEKVAREHLKDPV 245
Score = 58.4 bits (135), Expect = 2e-07
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV 409
RDV+ AQ+GTGKTA F + +L +D R QAL+LAPTRELA Q + +
Sbjct: 83 RDVVGIAQTGTGKTAAFGLPLLAIVDADERNVQALVLAPTRELAMQSAQAI 133
>UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family; n=1; Flavobacterium psychrophilum
JIP02/86|Rep: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family - Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511)
Length = 644
Score = 69.7 bits (163), Expect = 7e-11
Identities = 34/80 (42%), Positives = 47/80 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ DMI RR + + I +LDEADEML+ GF + I ++ + L SAT
Sbjct: 127 VATPGRMQDMINRRLVDISQINYCILDEADEMLNMGFYEDIVNILSTTPDEKNTWLFSAT 186
Query: 691 MPDDVLEVSRCFMRDPVPHT 750
MP +V + + FM DP+ T
Sbjct: 187 MPAEVARIGKQFMTDPIEIT 206
Score = 63.7 bits (148), Expect = 5e-09
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNA 436
D++A AQ+GTGKTA F ++Q+ID + R QALIL+PTREL QI + +
Sbjct: 42 DLVALAQTGTGKTAAFGFPVIQKIDANNRNTQALILSPTRELCLQITNELKNYSKYEKGI 101
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
A GG ++ E R ++ G +
Sbjct: 102 NVVAVYGGASITEQARDIKRGAQI 125
Score = 34.3 bits (75), Expect = 3.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
F+ + L E LLR I GFE P+ +Q++AI
Sbjct: 4 FEQLGLTESLLRAIIDLGFENPTEVQEKAI 33
>UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 990
Score = 69.3 bits (162), Expect = 1e-10
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA- 436
D+I +A+SGTGKTA F I L+ ID I Q +ILAPTRE+A QI++V+ +LG +
Sbjct: 63 DLIVRAKSGTGKTAVFGIIALEMIDIKISSVQVIILAPTREIAIQIKEVIASLGCEIKGL 122
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
K + IGG + D ++L S H+
Sbjct: 123 KVESFIGGVAMDIDRKKL-SNCHI 145
Score = 61.3 bits (142), Expect = 3e-08
Identities = 29/81 (35%), Positives = 47/81 (58%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C +G PGRV +I + L + ++LFVLDEAD+++ F+ I+ ++ L + QVI
Sbjct: 143 CHIAIGAPGRVKHLIDKGYLKMDHVRLFVLDEADKLMEESFQKDINYIYAKLPPNRQVIS 202
Query: 679 LSATMPDDVLEVSRCFMRDPV 741
SAT P D+ +M+ P+
Sbjct: 203 SSATYPGDLEIFLESYMQSPI 223
Score = 34.3 bits (75), Expect = 3.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
TF M L +++L G+ GF KPS IQ ++I
Sbjct: 25 TFSQMGLSQQVLNGLLNCGFHKPSPIQHKSI 55
>UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3;
Deltaproteobacteria|Rep: ATP-dependent RNA helicase -
Bdellovibrio bacteriovorus
Length = 505
Score = 69.3 bits (162), Expect = 1e-10
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
+D+I QA++G+GKTA FS+ IL +I+ QALIL PTRELA Q+ + LG L
Sbjct: 85 KDIIGQAKTGSGKTAAFSLPILNKINLDQPLLQALILCPTRELASQVVTEIRKLGRRLPG 144
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
K A GG + RE LE+GV +
Sbjct: 145 LKVLAMTGGQSGREQADALENGVQI 169
Score = 68.9 bits (161), Expect = 1e-10
Identities = 32/74 (43%), Positives = 45/74 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D + R + + +K VLDEAD+ML GF D+I V + L Q +L SAT
Sbjct: 171 VGTPGRLADFVGRNRIDLSAVKTVVLDEADKMLDMGFADEIKTVMRDLPGSRQTVLFSAT 230
Query: 691 MPDDVLEVSRCFMR 732
P+ + +SR + R
Sbjct: 231 FPESIEHLSRKYQR 244
>UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
ATP-dependent RNA helicase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 530
Score = 69.3 bits (162), Expect = 1e-10
Identities = 33/76 (43%), Positives = 44/76 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D + R + + +K VLDEADEML GF I + + Q L SAT
Sbjct: 126 VGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTFLFSAT 185
Query: 691 MPDDVLEVSRCFMRDP 738
+PD+V E+ FM+ P
Sbjct: 186 LPDEVRELGTKFMKQP 201
Score = 60.1 bits (139), Expect = 6e-08
Identities = 31/77 (40%), Positives = 47/77 (61%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D++ QAQ+GTGKTA+F I IL ++ QAL+L PTRELA Q+ + + +L + +
Sbjct: 43 DLMGQAQTGTGKTASFGIPILNRVIKG-EGLQALVLCPTRELAVQVTEEISSLSRRMRIQ 101
Query: 440 CHACIGGTNVREDIRQL 490
A GG ++ +R L
Sbjct: 102 VLAIYGGQSIELQLRSL 118
>UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Maricaulis maris (strain MCS10)
Length = 787
Score = 69.3 bits (162), Expect = 1e-10
Identities = 33/79 (41%), Positives = 48/79 (60%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C VGTPGR+ D I R AL + +K VLDEADEML GF++ + + A + +L
Sbjct: 125 CHIVVGTPGRLRDHIERGALDMSQLKAVVLDEADEMLDFGFREDLEYILDAAPASRRTLL 184
Query: 679 LSATMPDDVLEVSRCFMRD 735
SAT+P + +++R F +D
Sbjct: 185 FSATVPRAIADIARRFQKD 203
Score = 58.8 bits (136), Expect = 1e-07
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI---DTSIRECQ---ALILAPTRELAQQIQKVVIAL 418
RD++ AQ+G+GKTA F +++ + + D ALI+APTRELA Q+Q+ + L
Sbjct: 38 RDLLVSAQTGSGKTAAFGMAMAKTLLGDDDQFNRPDLPMALIVAPTRELALQVQRELAWL 97
Query: 419 GDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ +C+GG + R + + LE G H+
Sbjct: 98 YGEARGQIASCVGGMDPRAERKALERGCHI 127
>UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Clostridiales|Rep: DEAD/DEAH box helicase domain
protein - Desulfotomaculum reducens MI-1
Length = 438
Score = 69.3 bits (162), Expect = 1e-10
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH--L 430
+D+I Q+Q+G+GKT + + I Q+ID+S RE QALILAPT EL QI K + L + L
Sbjct: 41 KDIIGQSQTGSGKTLAYLLPIFQKIDSSKRETQALILAPTHELVMQIDKQIKTLSSNAGL 100
Query: 431 NAKCHACIGGTNVREDIRQLESGVHV 508
IG N+ I +L+ H+
Sbjct: 101 TINSTVMIGEVNIVRQIEKLKEKPHI 126
Score = 50.8 bits (116), Expect = 4e-05
Identities = 26/75 (34%), Positives = 43/75 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VG+ GRV ++I R+ + ++TIK V+DEAD +L + + DV K D Q+++ SA
Sbjct: 128 VGSTGRVLELIKRKKISSHTIKTIVIDEADMLLDQNNLAGVKDVIKTTMRDRQLMIFSAY 187
Query: 691 MPDDVLEVSRCFMRD 735
M + S+ +D
Sbjct: 188 MNQRAMAESKELTKD 202
>UniRef50_Q019E9 Cluster: ATP-dependent RNA helicase; n=2;
Ostreococcus|Rep: ATP-dependent RNA helicase -
Ostreococcus tauri
Length = 683
Score = 69.3 bits (162), Expect = 1e-10
Identities = 32/74 (43%), Positives = 49/74 (66%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D++ RRAL + I+ VLDEAD+ML+ GF++ + + A Q L SAT
Sbjct: 154 VGTPGRIMDLMNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILHDCPAGRQTFLFSAT 213
Query: 691 MPDDVLEVSRCFMR 732
MP V ++++ F++
Sbjct: 214 MPQWVKQITKKFLK 227
Score = 52.8 bits (121), Expect = 9e-06
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQIQKVVI 412
+DV+ +A++GTGKT FS+ +++++ R + ++LAPTRELA+Q++ +
Sbjct: 63 QDVVGRARTGTGKTLAFSLPVIEKLLSNGRGSGGRGYRNPKCIVLAPTRELAKQVENEIF 122
Query: 413 ALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
L+ C GGT + + +L GV +
Sbjct: 123 ITAPTLDTAC--VYGGTPIGQQESKLRRGVDI 152
>UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein;
n=37; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain MR-4)
Length = 427
Score = 68.9 bits (161), Expect = 1e-10
Identities = 32/79 (40%), Positives = 48/79 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ AL N + VLDEAD MLS GF D+++ V + L A Q +L SAT
Sbjct: 140 VATPGRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEALPAKKQTLLYSAT 199
Query: 691 MPDDVLEVSRCFMRDPVPH 747
P++V ++ + P+ +
Sbjct: 200 FPEEVRALTAKLLHQPLEY 218
Score = 62.1 bits (144), Expect = 1e-08
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIAL 418
RDV+A A +G+GKTA F++ +LQ++ + S + + L+L PTRELAQQ+ ++
Sbjct: 47 RDVLAGANTGSGKTAAFAVPLLQRLFEAKTAEKSAGQVRCLVLVPTRELAQQVADSFLSY 106
Query: 419 GDHLNA--KCHACIGGTNVREDIRQLESGVHV 508
H N K A GG +V ++ L +G V
Sbjct: 107 ASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138
>UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 389
Score = 68.9 bits (161), Expect = 1e-10
Identities = 31/83 (37%), Positives = 56/83 (67%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
++++ Q+Q+G+GKTATFSI L ++ + + + +I++PTRELA Q + + +LG A
Sbjct: 58 KNIMFQSQNGSGKTATFSIGTLARLRLTSKTTELIIVSPTRELAIQTENTLKSLG----A 113
Query: 437 KCHACIGGTNVREDIRQLESGVH 505
AC+GG ++ D++ L+ G+H
Sbjct: 114 NTRACVGGNSLGADVKALQKGIH 136
Score = 57.6 bits (133), Expect = 3e-07
Identities = 29/79 (36%), Positives = 48/79 (60%)
Frame = +1
Query: 505 CXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 684
C GTPGR+ ++ + A ++ VLDEADEML+ FK I D+ + L Q ++++
Sbjct: 137 CVSGTPGRILQLLKEHNIQAEKVQSVVLDEADEMLT-SFKSTIMDILQKL-PHAQKVIVT 194
Query: 685 ATMPDDVLEVSRCFMRDPV 741
AT+ DV+E++ +R+ V
Sbjct: 195 ATVSADVVELATAHLRNSV 213
Score = 39.9 bits (89), Expect = 0.068
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +3
Query: 135 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
+V T++ M LK EL+ I G+EKPS IQQRAI
Sbjct: 17 EVYPTWESMKLKPELIEAIKKNGWEKPSPIQQRAI 51
>UniRef50_Q6KZC2 Cluster: ATP-dependent RNA helicase; n=1;
Picrophilus torridus|Rep: ATP-dependent RNA helicase -
Picrophilus torridus
Length = 387
Score = 68.9 bits (161), Expect = 1e-10
Identities = 32/76 (42%), Positives = 48/76 (63%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D+I R L+ + +F+LDEAD ML GF D I+ + + L Q +L SAT
Sbjct: 125 IGTPGRIIDLINRDLLNLEHVGMFILDEADMMLDMGFIDDIYKIIENLPEKRQNVLASAT 184
Query: 691 MPDDVLEVSRCFMRDP 738
MP+ + ++ + M DP
Sbjct: 185 MPERLDDMIKNLMNDP 200
Score = 43.6 bits (98), Expect = 0.005
Identities = 26/78 (33%), Positives = 42/78 (53%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RDV+ ++ +G+GKTA F I +Q+ S LI+ PTRELA Q V + + +
Sbjct: 42 RDVVIKSMTGSGKTAAFLIPAIQRALGSKFFNTVLIILPTRELALQTYSVALNISRNF-F 100
Query: 437 KCHACIGGTNVREDIRQL 490
+ GG+++ + I L
Sbjct: 101 RTTVVYGGSSMEKQIHDL 118
>UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=1;
Desulfotalea psychrophila|Rep: Probable ATP-dependent
RNA helicase - Desulfotalea psychrophila
Length = 632
Score = 68.5 bits (160), Expect = 2e-10
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+I + +L + +K VLDEADEMLS GF D I + D Q +L SAT
Sbjct: 178 VGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLFSAT 237
Query: 691 MPDDVLEVSRCFMRDP 738
+ V+ ++ ++ P
Sbjct: 238 LSSRVMSIANRYLHSP 253
Score = 64.9 bits (151), Expect = 2e-09
Identities = 34/83 (40%), Positives = 46/83 (55%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D+I QAQ+GTGKTA F + +L ID S + QAL+LAPTRELAQQ+ +
Sbjct: 94 DLIGQAQTGTGKTAAFGLPLLNNIDFSKKCVQALVLAPTRELAQQVGDALATYSGDDGRN 153
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
GG++ + + L G V
Sbjct: 154 VLVVYGGSSYQAQVGGLRRGARV 176
Score = 33.5 bits (73), Expect = 5.9
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
+F D NLK +L+ + GF +P+ IQ++AI
Sbjct: 56 SFTDFNLKSDLVANLVKLGFSQPTPIQEKAI 86
>UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 561
Score = 68.5 bits (160), Expect = 2e-10
Identities = 35/83 (42%), Positives = 48/83 (57%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D++ A++GTGKT F+I ILQ++ ALIL PTRELA QI + ALG + K
Sbjct: 128 DILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLK 187
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
C +GG ++ R+L HV
Sbjct: 188 CSVIVGGRSLIHQARELSERPHV 210
Score = 53.2 bits (122), Expect = 7e-06
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Frame = +1
Query: 511 VGTPGRVYDMITRR----ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
V TPGR+ D+I A I+ FVLDEAD ML + DQ+ +F+ +S Q +L
Sbjct: 212 VATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKRQTLL 271
Query: 679 LSATMPDDVLEVSRCFMRDP 738
LSAT+ +++ + R R P
Sbjct: 272 LSATITNNINMLHRVSTRKP 291
>UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5;
Tetrapoda|Rep: DEAD-box corepressor DP103 beta - Mus
musculus (Mouse)
Length = 505
Score = 68.1 bits (159), Expect = 2e-10
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA- 436
D+I QA+SGTGKT FS L + Q LILAPTRE+A QI V+ A+G +
Sbjct: 102 DLIVQAKSGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKMEGL 161
Query: 437 KCHACIGGTNVREDIRQLE 493
+CH IGGT + +D +L+
Sbjct: 162 ECHVFIGGTPLSQDKTRLK 180
Score = 67.3 bits (157), Expect = 4e-10
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRG-FKDQIHDVFKMLSADVQVI 675
C VG+PGR+ +I L+ +I+LF+LDEAD++L G F++QI+ ++ L A Q++
Sbjct: 182 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQML 241
Query: 676 LLSATMPDDVLEVSRCFMRDP 738
+SAT P+ + +MRDP
Sbjct: 242 AVSATYPEVLANALTRYMRDP 262
>UniRef50_Q2J6D3 Cluster: DEAD/DEAH box helicase-like; n=2;
Frankia|Rep: DEAD/DEAH box helicase-like - Frankia sp.
(strain CcI3)
Length = 649
Score = 68.1 bits (159), Expect = 2e-10
Identities = 33/77 (42%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+ + L + VLDEADEML GF + + L + Q +L SAT
Sbjct: 212 VGTPGRLLDLARQHVLDLAGVGTLVLDEADEMLDLGFLPDVERIMSQLPTERQTMLFSAT 271
Query: 691 MPDDVLEVSRCFMRDPV 741
MP V+ ++R FM+ PV
Sbjct: 272 MPGPVISLARRFMKRPV 288
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +2
Query: 254 RRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALG 421
R D+I QA++GTGKT F + ++Q + + + QAL++ PTREL Q+ V G
Sbjct: 122 RNDIIGQARTGTGKTLAFGVPVVQTVLAAKEGADGRPQALVVVPTRELCVQVTADVTRAG 181
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ + GG + L +GV +
Sbjct: 182 ARRGLRVLSVYGGRAYEPQLSALRAGVDI 210
>UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=4; Flavobacteriaceae|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family protein
- Polaribacter dokdonensis MED152
Length = 373
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQVILLSA 687
+ TPGR+ D+I R A+ + +K +LDEADEMLS GFK ++ + K + +D + L SA
Sbjct: 128 IATPGRLIDLIERGAVDISHVKTVILDEADEMLSMGFKQDLNRILKFTTKSDRKTWLFSA 187
Query: 688 TMPDDVLEVSRCFMRDPVP 744
TMPD++ + + +M P
Sbjct: 188 TMPDEIKRIVKTYMDANAP 206
Score = 64.5 bits (150), Expect = 3e-09
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D I AQ+GTGKTA F + +L ID + QALIL+PTREL QQI+K + +++ +
Sbjct: 42 DFIGLAQTGTGKTAAFGLPVLHHIDANSDHIQALILSPTRELVQQIKKQLFKFTKYVDDR 101
Query: 440 --CHACIGGTNVREDIRQLESGVHV 508
A GG + + L+ H+
Sbjct: 102 IFLEAVFGGEKIDRQMNNLKRTTHI 126
>UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;
Bigelowiella natans|Rep: Translation initiation factor
4A2 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 378
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/77 (41%), Positives = 52/77 (67%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV ++ +L I+ FVLDEAD ++++ FK I ++++ L++ VQ+I+ SAT
Sbjct: 133 VGTPGRVLHLLQIGSLAITKIRTFVLDEADILMNKNFKIDIFNIYRYLNSKVQIIICSAT 192
Query: 691 MPDDVLEVSRCFMRDPV 741
+P L+ + F+ DPV
Sbjct: 193 IPLYTLQAASKFLLDPV 209
Score = 64.1 bits (149), Expect = 4e-09
Identities = 34/83 (40%), Positives = 46/83 (55%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RD+I Q+ SGTGKT + I Q+ SI Q LIL PTREL+ QI+ V L +
Sbjct: 48 RDIIYQSPSGTGKTTCYIIGTSNQLCQSINSPQCLILVPTRELSIQIRNVFNVLNIYTKN 107
Query: 437 KCHACIGGTNVREDIRQLESGVH 505
+C GG + ED++ L+ H
Sbjct: 108 SITSCHGGRWLGEDLKNLKKNFH 130
>UniRef50_Q7QA96 Cluster: ENSANGP00000013118; n=5; Eumetazoa|Rep:
ENSANGP00000013118 - Anopheles gambiae str. PEST
Length = 512
Score = 68.1 bits (159), Expect = 2e-10
Identities = 30/77 (38%), Positives = 46/77 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D++ + +TI +LDEAD ML GF+ QI V + D Q ++ SAT
Sbjct: 234 IATPGRLNDLVQEGVVDVSTITYLILDEADRMLDMGFEPQIRKVLLDVRPDRQTVMTSAT 293
Query: 691 MPDDVLEVSRCFMRDPV 741
PD V +++ +M DP+
Sbjct: 294 WPDGVRRLAQSYMHDPI 310
Score = 44.0 bits (99), Expect = 0.004
Identities = 35/89 (39%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISIL-----QQIDTSIREC-QALILAPTRELAQQIQKVVIALG 421
D+I AQ+GTGKT F + L Q I R L+LAPTRELA QI+K V A
Sbjct: 145 DLIGIAQTGTGKTLAFLLPALIHIEGQPIPRGERGGPNVLVLAPTRELALQIEKEV-AKY 203
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
K GG + R I + +GV +
Sbjct: 204 QFRGIKAVCLYGGGDRRAQINVVRNGVEI 232
>UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=24; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX20 - Homo sapiens (Human)
Length = 824
Score = 68.1 bits (159), Expect = 2e-10
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA- 436
D+I QA+SGTGKT FS L + Q LILAPTRE+A QI V+ A+G +
Sbjct: 101 DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGL 160
Query: 437 KCHACIGGTNVREDIRQLE 493
+CH IGGT + +D +L+
Sbjct: 161 ECHVFIGGTPLSQDKTRLK 179
Score = 67.3 bits (157), Expect = 4e-10
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRG-FKDQIHDVFKMLSADVQVI 675
C VG+PGR+ +I L+ +I+LF+LDEAD++L G F++QI+ ++ L A Q++
Sbjct: 181 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQML 240
Query: 676 LLSATMPDDVLEVSRCFMRDP 738
+SAT P+ + +MRDP
Sbjct: 241 AVSATYPEFLANALTKYMRDP 261
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 67.7 bits (158), Expect = 3e-10
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKVVIALG 421
+D++ AQ+GTGKTA F++ ++QQ I R +A+IL+PTRELA QI + ++ G
Sbjct: 141 KDLVGLAQTGTGKTAAFALPLIQQLLMNPIAIKGRSARAIILSPTRELALQIHEAFVSFG 200
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
L IGG +R+ +R L GV +
Sbjct: 201 KRLPLNFTHAIGGAPIRKQMRDLSKGVDI 229
Score = 64.9 bits (151), Expect = 2e-09
Identities = 29/82 (35%), Positives = 49/82 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ ++ L + K VLDEAD+ML GF + + ++ D Q +L SAT
Sbjct: 231 VATPGRLEDLVDQKGLRLDETKFLVLDEADQMLDIGFLPAVKRIISKVNKDRQTLLFSAT 290
Query: 691 MPDDVLEVSRCFMRDPVPHTCT 756
M ++ +++ ++ DPV + T
Sbjct: 291 MSKEIKKLTETYLTDPVQVSVT 312
>UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Reinekea sp. MED297|Rep: DEAD/DEAH box helicase-like
protein - Reinekea sp. MED297
Length = 579
Score = 67.7 bits (158), Expect = 3e-10
Identities = 34/77 (44%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D + R L + +K VLDEADEML GF + I + + D Q L SAT
Sbjct: 129 VGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTALFSAT 188
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + ++ + +DPV
Sbjct: 189 MPHQIKRITDQYQKDPV 205
Score = 62.1 bits (144), Expect = 1e-08
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
DV+ AQ+GTGKTA FS+ +L +IDT+ + QAL+L PTRELA Q+ + + N
Sbjct: 44 DVLGLAQTGTGKTAAFSLPLLSRIDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNF 103
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
GG ++R +R L+ V
Sbjct: 104 HVLPIYGGADMRNQLRALKQNPQV 127
>UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_03001730;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001730 - Ferroplasma acidarmanus fer1
Length = 430
Score = 67.3 bits (157), Expect = 4e-10
Identities = 32/76 (42%), Positives = 45/76 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D+ ++ L + +K VLDEAD ML GF D I + Q ILLSAT
Sbjct: 119 IGTPGRILDLYNQKYLKLDHVKYLVLDEADLMLDMGFIDDIKKIISFTPEGRQTILLSAT 178
Query: 691 MPDDVLEVSRCFMRDP 738
+P +V ++ FM +P
Sbjct: 179 LPAEVKTIANHFMNNP 194
Score = 50.8 bits (116), Expect = 4e-05
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDT-SIRECQALILAPTRELAQQIQKVVIALGDHLN 433
+DVI ++++G+GKTA + + +L ++ + +A+I+ PTRELA Q +V LG
Sbjct: 34 KDVIIRSKTGSGKTAAYLLPVLNSVEKLKGKSVKAIIILPTRELALQTHRVASRLGKISG 93
Query: 434 AKCHACIGGTNVREDIRQL 490
K GG ++ + +L
Sbjct: 94 IKSTIVYGGASIIRQVEEL 112
>UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=32;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 427
Score = 67.3 bits (157), Expect = 4e-10
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGD 424
D+ A AQ+GTGKTA FS+ ++QQ+ S + +ALI APTRELA+QI + A
Sbjct: 40 DIFATAQTGTGKTAAFSLPLIQQLLESGKSASRKTARALIFAPTRELAEQIADNIKAYTK 99
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
+ N A GG + R LE+GV +
Sbjct: 100 YTNLSVAAIFGGRKMSSQERMLENGVDI 127
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/76 (30%), Positives = 40/76 (52%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ + I + I+ V DEAD +L GF + + + + + Q+++ SAT
Sbjct: 129 VATPGRLEEHIESGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVETNPQIMMFSAT 188
Query: 691 MPDDVLEVSRCFMRDP 738
+ E+S+ +R P
Sbjct: 189 TSSQLNELSKDILRKP 204
>UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=25; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 450
Score = 67.3 bits (157), Expect = 4e-10
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDHLN 433
+D+I QA++GTGKT F + IL++ID + QALI+APTRELA QI ++ L +
Sbjct: 43 KDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQRED 102
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
A GG +V + +R+L+ H+
Sbjct: 103 INVLAIYGGQDVAQQLRKLKGNTHI 127
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/76 (38%), Positives = 44/76 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D I R + + + VLDEAD+ML GF I D+ Q +L SAT
Sbjct: 129 VATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSAT 188
Query: 691 MPDDVLEVSRCFMRDP 738
+P D+ ++++ +M +P
Sbjct: 189 IPKDIKKLAKRYMDEP 204
>UniRef50_A1UCR5 Cluster: DEAD/DEAH box helicase domain protein;
n=31; Actinobacteria (class)|Rep: DEAD/DEAH box helicase
domain protein - Mycobacterium sp. (strain KMS)
Length = 507
Score = 67.3 bits (157), Expect = 4e-10
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+ + L + + VLDEADEML GF I + + Q +L SAT
Sbjct: 143 VGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQTPDTRQAMLFSAT 202
Query: 691 MPDDVLEVSRCFMRDP 738
MPD ++ ++R FM P
Sbjct: 203 MPDPIITLARTFMNQP 218
Score = 42.3 bits (95), Expect = 0.013
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRE-----CQALILAPTRELAQQIQKVVIALGD 424
D+I QA++G GKT F + +LQ++ T + +ALI+ PTREL Q+ +
Sbjct: 49 DLIGQARTGMGKTYAFGVPLLQRVTTDTEKELSGIPRALIVVPTRELCLQVHSDLSLAAK 108
Query: 425 HLNA 436
+L A
Sbjct: 109 YLTA 112
>UniRef50_Q3EBD3 Cluster: DEAD-box ATP-dependent RNA helicase 41;
n=6; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 41 - Arabidopsis thaliana (Mouse-ear cress)
Length = 505
Score = 67.3 bits (157), Expect = 4e-10
Identities = 32/68 (47%), Positives = 47/68 (69%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGRV D++++ + + I FVLDE D ML RGF+DQ+ +F+ LS QV+L SAT
Sbjct: 241 IGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSAT 299
Query: 691 MPDDVLEV 714
+ +V +V
Sbjct: 300 ISREVEKV 307
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVVI 412
+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q++
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 207
Query: 413 ALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
LG L K +GG + + +++ GV +
Sbjct: 208 MLGKGLPFKTALVVGGDPMSGQLYRIQQGVEL 239
>UniRef50_Q8L7S8 Cluster: DEAD-box ATP-dependent RNA helicase 3;
n=13; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 748
Score = 67.3 bits (157), Expect = 4e-10
Identities = 31/77 (40%), Positives = 51/77 (66%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+I R+L ++ VLDEAD+ML+ GF++ + + + L Q +L SAT
Sbjct: 233 VGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSAT 292
Query: 691 MPDDVLEVSRCFMRDPV 741
MP V +++R ++ +P+
Sbjct: 293 MPTWVKKLARKYLDNPL 309
Score = 50.8 bits (116), Expect = 4e-05
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 10/94 (10%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELAQQIQKV 406
RD+IA+A++GTGKT F I I++++ T+ R + L+LAPTRELA+Q++K
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 199
Query: 407 VIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ +L+ C GG + L GV V
Sbjct: 200 IKESAPYLSTVC--VYGGVSYTIQQSALTRGVDV 231
>UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;
n=7; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 24 - Arabidopsis thaliana (Mouse-ear cress)
Length = 760
Score = 67.3 bits (157), Expect = 4e-10
Identities = 34/87 (39%), Positives = 47/87 (54%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C V TPGR+ DM+ +AL VLDEAD M GF+ Q+ + + D Q +L
Sbjct: 352 CEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLL 411
Query: 679 LSATMPDDVLEVSRCFMRDPVPHTCTE 759
SATMP V +++R + DP+ T E
Sbjct: 412 FSATMPWKVEKLAREILSDPIRVTVGE 438
Score = 43.6 bits (98), Expect = 0.005
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVIALG 421
RDVI A++G+GKTA F + ++ I ++ + +I APTRELA QI
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFS 325
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ A GG + E ++L++G +
Sbjct: 326 KAYGLRVSAVYGGMSKHEQFKELKAGCEI 354
>UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=9; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX20 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 761
Score = 67.3 bits (157), Expect = 4e-10
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA- 436
D+I QA+SGTGKT F+ L + Q L+LAPTRE+A QI VV+A+G +
Sbjct: 65 DLIVQAKSGTGKTCVFTTIALDSLILENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGL 124
Query: 437 KCHACIGGTNVREDIRQLE 493
+CH IGG + +D + L+
Sbjct: 125 ECHVFIGGRPISQDKQHLK 143
Score = 67.3 bits (157), Expect = 4e-10
Identities = 33/84 (39%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEML----SRGFKDQIHDVFKMLSADV 666
C +G+PGR+ +I AL ++I+LFVLDEAD++L S F++QI+ ++ L A+
Sbjct: 145 CHIAIGSPGRIKQLIEMGALMVSSIRLFVLDEADKLLEDDSSSSFQEQINWIYSSLPANK 204
Query: 667 QVILLSATMPDDVLEVSRCFMRDP 738
Q++ LSAT P+ + + +MR+P
Sbjct: 205 QMLALSATYPESLAQQLSRYMREP 228
>UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DBP5 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 546
Score = 67.3 bits (157), Expect = 4e-10
Identities = 31/72 (43%), Positives = 50/72 (69%)
Frame = +2
Query: 248 HPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 427
+P R++I Q+QSGTGKTA F++++L ++D +I QA+ +AP+RELA+QIQ+V+ +G
Sbjct: 185 NPPRNLIGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVIDQIGQF 244
Query: 428 LNAKCHACIGGT 463
I G+
Sbjct: 245 TQVGTFLAIPGS 256
Score = 55.6 bits (128), Expect = 1e-06
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Frame = +1
Query: 511 VGTPGRVYDMITR--RALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKMLSADVQVILL 681
+GTPG + DM+ R R L I++ VLDEADE++++ G +Q + ++L +VQ +L
Sbjct: 269 IGTPGTLVDMLMRGSRILDPRMIRVLVLDEADELIAQQGLGEQTFRIKQLLPPNVQNVLF 328
Query: 682 SATMPDDVLEVSRCF 726
SAT DDV E + F
Sbjct: 329 SATFNDDVQEFADRF 343
Score = 44.0 bits (99), Expect = 0.004
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
V++F ++NL E+L++GI A GF+KPS IQ++A+
Sbjct: 147 VQSFKELNLHEDLMKGIIAAGFQKPSKIQEKAL 179
>UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellular
organisms|Rep: ATP-dependent RNA helicase - Bdellovibrio
bacteriovorus
Length = 505
Score = 66.9 bits (156), Expect = 5e-10
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGD 424
D++ AQ+GTGKTA FS+ ILQ + R+ + LIL PTRELA QI + + A
Sbjct: 43 DLLGIAQTGTGKTAAFSLPILQNLSKHTRKIEPKSPRCLILTPTRELAIQIHENIEAYSK 102
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
HLN K GG +R L+ GV +
Sbjct: 103 HLNMKHAVIFGGVGQNPQVRALQGGVDI 130
Score = 55.2 bits (127), Expect = 2e-06
Identities = 25/76 (32%), Positives = 43/76 (56%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D+ ++ L + +++FVLDEAD ML GF I + +L + SAT
Sbjct: 132 IATPGRLMDLHGQKHLKLDRVEIFVLDEADRMLDMGFMQDIKKILPLLPQKRHNLFFSAT 191
Query: 691 MPDDVLEVSRCFMRDP 738
MP ++ ++ + +P
Sbjct: 192 MPHEIQTLANRILVNP 207
>UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=1;
Propionibacterium acnes|Rep: Putative ATP-dependent RNA
helicase - Propionibacterium acnes
Length = 561
Score = 66.9 bits (156), Expect = 5e-10
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+ R+ L + +++ VLDEADEML GF + ++ A Q +L SAT
Sbjct: 186 VGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFSAT 245
Query: 691 MPDDVLEVSRCFMRDPVPHTCTEG 762
MP ++ ++R + PV H EG
Sbjct: 246 MPAPIMALARSQLHRPV-HVRAEG 268
Score = 52.8 bits (121), Expect = 9e-06
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQID----------TSIRECQALILAPTRELAQQIQKVV 409
D+I QA++GTGKT F I+IL +I T+ + QAL++ PTRELA Q+ K +
Sbjct: 92 DLIGQARTGTGKTLAFGITILLRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI 151
Query: 410 IALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
A+ GG I L++GV V
Sbjct: 152 STAASVRGARVLTVYGGVGYESQIDALKAGVDV 184
>UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: ATP-dependent RNA helicase, DEAD box family
- Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 430
Score = 66.9 bits (156), Expect = 5e-10
Identities = 34/83 (40%), Positives = 49/83 (59%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
+++ QA +GTGKTA + + +LQ+I ++ Q LI+ PTRELA Q+ V LG +L +
Sbjct: 41 NLVGQAPTGTGKTAAYLLPVLQRIQRG-KKAQVLIVTPTRELALQVADEVAKLGKYLKVR 99
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
A GG + IR L GV V
Sbjct: 100 ALAVYGGQAIERQIRGLRQGVEV 122
Score = 66.1 bits (154), Expect = 9e-10
Identities = 32/73 (43%), Positives = 44/73 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I R+ A IK+ +LDEADEML GF D I + L+ Q +L SAT
Sbjct: 124 VGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSAT 183
Query: 691 MPDDVLEVSRCFM 729
+P + + + F+
Sbjct: 184 LPAPIKTIIKKFL 196
>UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1;
Pseudoalteromonas atlantica T6c|Rep: DEAD/DEAH box
helicase-like - Pseudoalteromonas atlantica (strain T6c
/ BAA-1087)
Length = 458
Score = 66.9 bits (156), Expect = 5e-10
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Frame = +2
Query: 254 RRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALG 421
+ D++A AQ+GTGKTA F++ +LQ++ T ++ ++LI+ PTRELA Q+ V
Sbjct: 38 QHDLLAVAQTGTGKTAAFTLPLLQRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYS 97
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
LN + A GG + I QL+ GV V
Sbjct: 98 TQLNIRSFAVYGGVRIEPQIAQLQEGVDV 126
Score = 58.8 bits (136), Expect = 1e-07
Identities = 27/76 (35%), Positives = 41/76 (53%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D+ +RALH +++ V DEAD ML GF D + + +L Q +L SAT
Sbjct: 128 IATPGRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQTLLFSAT 187
Query: 691 MPDDVLEVSRCFMRDP 738
+ +R + P
Sbjct: 188 FSKQIKHFAREMLNAP 203
>UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20;
Francisella|Rep: ATP-dependent RNA helicase -
Francisella tularensis subsp. novicida GA99-3548
Length = 569
Score = 66.9 bits (156), Expect = 5e-10
Identities = 32/76 (42%), Positives = 47/76 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGT GRV D I + L + ++ VLDEADEML GF D + V +S + Q +L SAT
Sbjct: 133 VGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQRLLFSAT 192
Query: 691 MPDDVLEVSRCFMRDP 738
+P D+ ++ ++R+P
Sbjct: 193 IPTDIADIIEEYLRNP 208
Score = 65.7 bits (153), Expect = 1e-09
Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDHL 430
RDV+ QAQ+GTGKTA F++ ++ +D + R+ Q L+LAPTRELA Q+ + A ++
Sbjct: 45 RDVLGQAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNV 104
Query: 431 NAKCHACI-GGTNVREDIRQLESGVHV 508
ACI GG IR L+ GV V
Sbjct: 105 PNLDVACIYGGQEYGSQIRALKQGVKV 131
>UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Bacteroides capillosus ATCC 29799
Length = 636
Score = 66.9 bits (156), Expect = 5e-10
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSI---RECQALILAPTRELAQQIQKVVIALGDH 427
RDV+ AQ+GTGKT F+ ILQ++ I R ++LIL PTRELA QIQ+ A G H
Sbjct: 39 RDVLGCAQTGTGKTCAFAAPILQRLGGDIPAGRPIRSLILTPTRELALQIQESFEAYGKH 98
Query: 428 LNAKCHACIGGTNVREDIRQLESGVHV 508
L + GG + + +L+ GV +
Sbjct: 99 LPLRSAVIFGGVGQQPQVDKLKKGVDI 125
Score = 64.5 bits (150), Expect = 3e-09
Identities = 30/77 (38%), Positives = 48/77 (62%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D+ + + + +++FVLDEAD ML GF + V K+L A Q + SAT
Sbjct: 127 VATPGRLLDLQGQGFVDLSRLEIFVLDEADRMLDMGFLHDVRRVLKLLPAVKQTLFFSAT 186
Query: 691 MPDDVLEVSRCFMRDPV 741
MP +V+++ +++PV
Sbjct: 187 MPPEVMDLVNGLLKNPV 203
Score = 36.7 bits (81), Expect = 0.63
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 251
TF ++ L + +L+ + G+EKPS IQ++AI P +
Sbjct: 2 TFRELGLTQSILKALAELGYEKPSPIQEKAIPPAL 36
>UniRef50_Q9N5K1 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 630
Score = 66.9 bits (156), Expect = 5e-10
Identities = 30/77 (38%), Positives = 46/77 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ DM+T++ ++ + VLDEAD ML GF+D+I +F A Q +L SAT
Sbjct: 327 VATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSAT 386
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + ++ + P+
Sbjct: 387 MPRKIQFFAKSALVKPI 403
Score = 47.6 bits (108), Expect = 3e-04
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQA---LILAPTRELAQQIQKVVI 412
RD+I A +G+GKT TF + ++ Q++ + LI+ P+RELA+QI ++I
Sbjct: 228 RDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLII 287
Query: 413 ALGDHL------NAKCHACIGGTNVREDIRQLESGVHV 508
+ D L + CIGG + E + + G+H+
Sbjct: 288 EMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHI 325
>UniRef50_Q54CD6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 697
Score = 66.9 bits (156), Expect = 5e-10
Identities = 31/76 (40%), Positives = 49/76 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ +MI + +++ + VLDEAD+MLS+G Q+ + + D Q IL SAT
Sbjct: 347 ISTPGRLIEMIENGHVDLSSVTMLVLDEADKMLSKGLIPQLKQIRGQIRPDSQNILFSAT 406
Query: 691 MPDDVLEVSRCFMRDP 738
PD + EVS+ +++DP
Sbjct: 407 FPDSLKEVSKDWIKDP 422
>UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6;
Helicobacteraceae|Rep: ATP-dependent RNA helicase DeaD -
Helicobacter hepaticus
Length = 530
Score = 66.5 bits (155), Expect = 7e-10
Identities = 34/79 (43%), Positives = 51/79 (64%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+D+IAQAQ+GTGKTA F+I IL ++ + ++ +ALI+ PTRELA QI + ++ LG
Sbjct: 83 KDLIAQAQTGTGKTAAFAIPILNTLNRN-KDIEALIITPTRELAMQISEEILKLGRFGRI 141
Query: 437 KCHACIGGTNVREDIRQLE 493
K GG +++ LE
Sbjct: 142 KTICMYGGQSIKRQCDLLE 160
Score = 60.9 bits (141), Expect = 3e-08
Identities = 28/76 (36%), Positives = 45/76 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D + + + ++ VLDE+DEML GF D I ++FK L Q +L SAT
Sbjct: 167 IATPGRLLDHLQNGRIAHFSPQIVVLDESDEMLDMGFLDDIEEIFKFLPNTRQTLLFSAT 226
Query: 691 MPDDVLEVSRCFMRDP 738
MP+ + ++ + +P
Sbjct: 227 MPEPIKALAMKILNEP 242
>UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=2;
Clostridium difficile|Rep: Putative ATP-dependent RNA
helicase - Clostridium difficile (strain 630)
Length = 381
Score = 66.5 bits (155), Expect = 7e-10
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI--QKVVIALGDHL 430
+D++ +Q+GTGKT + + I ++IDTS RE QALILAPT EL QI Q ++A L
Sbjct: 40 KDLLINSQTGTGKTLAYLLPIFEKIDTSKRETQALILAPTHELVMQITNQVELLAKNAEL 99
Query: 431 NAKCHACIGGTNVREDIRQLES 496
+ A IG N+++ I+ +++
Sbjct: 100 SVTSLALIGEVNIQKQIKNIKA 121
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/75 (32%), Positives = 43/75 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+G+ GRV D+I ++ L ++ IK VLDE D +L+ I D+ + D Q+I SA+
Sbjct: 128 IGSCGRVLDLIKQKKLKSHNIKTIVLDEVDNLLNGKNITCIEDIIRTTLRDRQIIGCSAS 187
Query: 691 MPDDVLEVSRCFMRD 735
+ D +++ M++
Sbjct: 188 LTDSTIKICDKLMKE 202
>UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein;
n=8; Bacteria|Rep: DEAD/DEAH box helicase domain protein
- Dehalococcoides sp. BAV1
Length = 561
Score = 66.5 bits (155), Expect = 7e-10
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHLNA 436
DVI AQ+GTGKTA +++ I+Q++ ++ R + L++APTRELA QI +LG
Sbjct: 40 DVIGLAQTGTGKTAAYALPIIQKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARI 99
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ + GG N+ + IR+L SGV V
Sbjct: 100 RECSIYGGVNMDQQIRRLRSGVDV 123
Score = 54.0 bits (124), Expect = 4e-06
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V PGR+ D I R + ++ ++DEAD M GF+ I + K L Q +L SAT
Sbjct: 125 VACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSAT 184
Query: 691 MPDDVLEVSRCFMRDPV 741
MP +V +++ +PV
Sbjct: 185 MPPEVRKLTLETQTNPV 201
>UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 1022
Score = 66.5 bits (155), Expect = 7e-10
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Frame = +2
Query: 245 LHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 424
+ P ++IAQAQSGTGKTA F +++L +ID ++ Q + LAPT ELA+QI +VV +G
Sbjct: 654 MEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGK 713
Query: 425 HL-NAKCHACIGGTNV 469
+ N K H I G N+
Sbjct: 714 FIDNLKIHYAIKGGNM 729
Score = 39.9 bits (89), Expect = 0.068
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +1
Query: 511 VGTPGRVYDMITR-RALHANTIKLFVLDEADEML-SRGFKDQIHDVFKML---SADVQVI 675
+GTPG D + + + + + I+ VLDEAD M+ +GF D ++ M+ S VQ +
Sbjct: 743 IGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSM 802
Query: 676 LLSATMPDDVLEVSRCFMRDPV 741
L SAT + V+ + +++ +
Sbjct: 803 LFSATYDEPVINFATKIIKNAI 824
>UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6;
Ascomycota|Rep: ATP-dependent rRNA helicase RRP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 501
Score = 66.5 bits (155), Expect = 7e-10
Identities = 34/83 (40%), Positives = 49/83 (59%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D+I AQ+G+GKTA F+I IL ++ A ILAPTRELAQQI++ +LG + +
Sbjct: 120 DIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVR 179
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
+GG N+ + R L H+
Sbjct: 180 STCIVGGMNMMDQARDLMRKPHI 202
Score = 40.3 bits (90), Expect = 0.051
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +1
Query: 511 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML-SADVQVILLS 684
+ TPGR+ D + + +K V+DEAD +L F + + K++ + + L S
Sbjct: 204 IATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLFS 263
Query: 685 ATMPDDVLEVSRCFMRDPV 741
ATM + ++ R + +PV
Sbjct: 264 ATMTSKIDKLQRASLTNPV 282
Score = 36.7 bits (81), Expect = 0.63
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 120 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
+T+ D+ E+F ++NL EL++ + KP+ IQ +AI P ++
Sbjct: 73 NTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALE 117
>UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54;
Gammaproteobacteria|Rep: Cold-shock DEAD box protein A -
Shigella flexneri
Length = 629
Score = 66.5 bits (155), Expect = 7e-10
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
RDV+ AQ+G+GKTA FS+ +LQ +D ++ Q L+LAPTRELA Q+ + + H+
Sbjct: 44 RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
A GG +R L G +
Sbjct: 104 VNVVALYGGQRYDVQLRALRQGPQI 128
Score = 66.5 bits (155), Expect = 7e-10
Identities = 31/76 (40%), Positives = 45/76 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D + R L + + VLDEADEML GF + + + + Q L SAT
Sbjct: 130 VGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSAT 189
Query: 691 MPDDVLEVSRCFMRDP 738
MP+ + ++R FM++P
Sbjct: 190 MPEAIRRITRRFMKEP 205
>UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3) (Regulator of steroidogenic factor 1)
(ROSF-1); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Probable ATP-dependent RNA helicase DDX20
(DEAD box protein 20) (DEAD box protein DP 103)
(Component of gems 3) (Gemin-3) (Regulator of
steroidogenic factor 1) (ROSF-1) - Tribolium castaneum
Length = 688
Score = 66.1 bits (154), Expect = 9e-10
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA- 436
D+I +++SGTGKT FS L+ ++T+ Q LIL PTRE+A QI+ V+ ++G H+N
Sbjct: 63 DLIVKSKSGTGKTLVFSTIALETVNTAKDHLQVLILVPTREIAVQIEDVLRSVGCHVNGL 122
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
K + IGG + +D+++ S H+
Sbjct: 123 KIESFIGGRPLEDDLKK-SSKCHI 145
Score = 65.3 bits (152), Expect = 2e-09
Identities = 32/87 (36%), Positives = 50/87 (57%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C VG PGRV ++ AL N +KLFVLDEAD+++ F+ I++++ L Q+I+
Sbjct: 143 CHIAVGAPGRVKHLLKMGALTTNLVKLFVLDEADKLMEESFQSDINEIYNSLPPRKQMIV 202
Query: 679 LSATMPDDVLEVSRCFMRDPVPHTCTE 759
SAT P ++ +M+ P H +E
Sbjct: 203 SSATYPQELDTFLANYMQSPT-HVTSE 228
>UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=23;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - Bradyrhizobium japonicum
Length = 530
Score = 66.1 bits (154), Expect = 9e-10
Identities = 30/76 (39%), Positives = 43/76 (56%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ L +++ VLDEAD ML GF + I + L Q + SAT
Sbjct: 144 VATPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSAT 203
Query: 691 MPDDVLEVSRCFMRDP 738
MP D+ E++ +RDP
Sbjct: 204 MPKDIAELADSMLRDP 219
Score = 60.9 bits (141), Expect = 3e-08
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKVVIALG 421
RDV+ AQ+GTGKTA+F++ IL + I + + L+L+PTREL+ QI A G
Sbjct: 54 RDVVGIAQTGTGKTASFALPILHRLLEHRIKPQPKTTRVLVLSPTRELSGQILDSFNAYG 113
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
H+ IGG + +R L GV V
Sbjct: 114 RHIRLSSTLAIGGVPMGRQVRSLMQGVEV 142
>UniRef50_Q9S531 Cluster: DEAD-box protein; n=4;
Cystobacterineae|Rep: DEAD-box protein - Myxococcus
xanthus
Length = 808
Score = 66.1 bits (154), Expect = 9e-10
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+D+I ++++GTGKTA F + +L++I R +ALIL PTRELA Q+ + L H
Sbjct: 67 KDLIVRSKTGTGKTAAFGLPLLEKIPADERRVRALILCPTRELALQVADELKMLAKHKGL 126
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
K A GG ++++ LE G +
Sbjct: 127 KIAAIYGGASMKQQEDALEEGTPI 150
Score = 62.9 bits (146), Expect = 8e-09
Identities = 31/65 (47%), Positives = 42/65 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV+D I R L + VLDEADEML++GF +++ + L QV+L SAT
Sbjct: 152 VGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQVLLFSAT 211
Query: 691 MPDDV 705
+P D+
Sbjct: 212 VPTDI 216
Score = 34.3 bits (75), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 254
FDDMNL E + + G+ P+ +Q RA P I+
Sbjct: 31 FDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIE 65
>UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Solibacter usitatus Ellin6076|Rep: DEAD/DEAH box
helicase domain protein - Solibacter usitatus (strain
Ellin6076)
Length = 422
Score = 66.1 bits (154), Expect = 9e-10
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDHL 430
+D++A AQ+GTGKT F + +Q + T R+ +ALIL PTRELA QI + ++ +
Sbjct: 40 KDIVATAQTGTGKTLAFLLPTIQLLSTEPRQPGVRALILTPTRELALQINEALLQIARGT 99
Query: 431 NAKCHACIGGTNVREDIRQLESGVHV 508
+ +GG N R +R + G ++
Sbjct: 100 GIRAAVAVGGLNERSQLRDIRGGANI 125
Score = 61.3 bits (142), Expect = 3e-08
Identities = 27/77 (35%), Positives = 46/77 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+YD ++R ++ T+++ +LDE+D ML GF I + + A+ Q +L SAT
Sbjct: 127 VATPGRLYDFMSRGLINLTTVRMLILDESDRMLDMGFLPTIKRIIAAMPAERQTLLFSAT 186
Query: 691 MPDDVLEVSRCFMRDPV 741
+ V ++ +R+ V
Sbjct: 187 LESSVKQLVETHVRNAV 203
>UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ATP
dependent RNA helicase - Lentisphaera araneosa HTCC2155
Length = 537
Score = 66.1 bits (154), Expect = 9e-10
Identities = 33/81 (40%), Positives = 49/81 (60%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D+I QAQ+GTGKTA F + I+Q+I+ +++ QALIL PTRELA Q+ + + +
Sbjct: 42 DIIGQAQTGTGKTAAFGLPIVQKIEPGLKKPQALILCPTRELAIQVNEEIKSFCKGRGIT 101
Query: 440 CHACIGGTNVREDIRQLESGV 502
GG + + R L+ GV
Sbjct: 102 TVTLYGGAPIMDQKRALKKGV 122
Score = 58.4 bits (135), Expect = 2e-07
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR I L ++++ VLDEADEML+ GF + + V K D V++ SAT
Sbjct: 126 VATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRTVLMFSAT 185
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + +++ +M + +
Sbjct: 186 MPPRLKKIAESYMHNSI 202
>UniRef50_A2EVI2 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 598
Score = 66.1 bits (154), Expect = 9e-10
Identities = 32/80 (40%), Positives = 46/80 (57%)
Frame = +1
Query: 502 SCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 681
S V TPGR+ D I N + VLDEAD+ML GF+ QI + +S D Q ++
Sbjct: 250 SLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKDRQTMMF 309
Query: 682 SATMPDDVLEVSRCFMRDPV 741
SAT P ++ +++ F+ DPV
Sbjct: 310 SATWPKEIQQLAADFLVDPV 329
Score = 41.9 bits (94), Expect = 0.017
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGD 424
D+I A++G+GKTA F I + I + L+L+PTRELAQQI +V D
Sbjct: 164 DLIGIAKTGSGKTAAFLIPAMVHIGLQEPMYRGDGPIVLVLSPTRELAQQIAEVAKGFCD 223
Query: 425 HLNAKCHACIGGTN---VREDIRQLES 496
+L + GG D+R L S
Sbjct: 224 NLMIRQTCLFGGAGRGPQANDLRHLPS 250
>UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 476
Score = 65.7 bits (153), Expect = 1e-09
Identities = 36/86 (41%), Positives = 49/86 (56%)
Frame = +2
Query: 239 NALHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL 418
NA+H + DV+ QA++GTGKTA F +S+L Q+ + L+L TRELA QI+ L
Sbjct: 71 NAIHGK-DVLCQAKAGTGKTAVFVLSVLNQLPDDAKPFSCLVLCHTRELAFQIKNEFKRL 129
Query: 419 GDHLNAKCHACIGGTNVREDIRQLES 496
G N K A GG DI L++
Sbjct: 130 GKFTNFKVKAVYGGVEESVDIHTLKT 155
Score = 36.7 bits (81), Expect = 0.63
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3
Query: 147 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
+F+D +LK++LLR + GFE+PS +Q + I
Sbjct: 39 SFNDFSLKQDLLRSVKEAGFERPSEVQHQCI 69
>UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28;
Alphaproteobacteria|Rep: Cold-shock dead-box protein A -
Bradyrhizobium japonicum
Length = 650
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIAL 418
RD++ AQ+G+GKT + +++ + + I + ALI+APTRELA Q+Q+ + L
Sbjct: 37 RDLLVSAQTGSGKTLAYGLALAKDLLDGIERFERAGAPLALIVAPTRELALQVQRELAWL 96
Query: 419 GDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+H + + +C+GG + R + R+L +G H+
Sbjct: 97 YEHADGRVVSCVGGMDPRREQRELAAGAHI 126
Score = 56.4 bits (130), Expect = 7e-07
Identities = 26/74 (35%), Positives = 45/74 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D + R L + +K VLDEADEML+ GF++ + + + + +L SAT
Sbjct: 128 VGTPGRLCDHLRRGRLDISELKAVVLDEADEMLNLGFREDMEFILETTPETRRTLLFSAT 187
Query: 691 MPDDVLEVSRCFMR 732
P ++ +++ + +
Sbjct: 188 FPRGIVALAKQYQQ 201
>UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=9; Bacteroidales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 427
Score = 65.7 bits (153), Expect = 1e-09
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ + + + + FVLDEAD ML GF D I ++K L + Q ++ SAT
Sbjct: 130 IATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSSCQTVMFSAT 189
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + +++ +RDP+
Sbjct: 190 MPPKIRKLAASILRDPI 206
Score = 54.4 bits (125), Expect = 3e-06
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDH 427
RDVIA AQ+GTGKTA + + IL ++ + + A+I+APTRELAQQI + V
Sbjct: 39 RDVIACAQTGTGKTAAYLLPILDRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYF 98
Query: 428 LNAKCHACIGGTN 466
+ A GGT+
Sbjct: 99 MPVSAVAIYGGTD 111
>UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative ATP-dependent RNA helicase - Protochlamydia
amoebophila (strain UWE25)
Length = 407
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/76 (40%), Positives = 47/76 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D I R + + ++ +LDEADEMLS GF D + + + L+ Q +L SAT
Sbjct: 138 VATPGRLIDFIYSRQIDLSHVETLILDEADEMLSMGFYDDLVFIIQCLNHSHQTLLFSAT 197
Query: 691 MPDDVLEVSRCFMRDP 738
MP + +++ M+DP
Sbjct: 198 MPAAIQRLAKHHMKDP 213
Score = 64.9 bits (151), Expect = 2e-09
Identities = 33/88 (37%), Positives = 52/88 (59%)
Frame = +2
Query: 245 LHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 424
+ ++D+IA +Q+G+GKTAT +I I +++T + + QALI+ PTRELA Q +G
Sbjct: 49 IQKKQDLIALSQTGSGKTATCAIPICNRVNTELTDIQALIIVPTRELALQYATETQKIGK 108
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
+ K A GG + +L+ GV V
Sbjct: 109 YKGVKAFAIFGGEDSALQQSKLKHGVQV 136
>UniRef50_Q4PNH7 Cluster: Putative cold-shock dead-box protein A;
n=1; uncultured marine bacterium 66A03|Rep: Putative
cold-shock dead-box protein A - uncultured marine
bacterium 66A03
Length = 659
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/77 (38%), Positives = 48/77 (62%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I R L + IK VLDEADEML GF++ + + + + +L SAT
Sbjct: 129 VGTPGRLRDHIERGVLRLSDIKAVVLDEADEMLDMGFREDLTFILGKAPVERRTLLFSAT 188
Query: 691 MPDDVLEVSRCFMRDPV 741
+P ++++++ + +D V
Sbjct: 189 VPTQIVKLAKTYQKDSV 205
Score = 60.9 bits (141), Expect = 3e-08
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIALG 421
D++ AQ+G+GKT F ISI + E A+I+APTRELA Q++K + L
Sbjct: 39 DLLVSAQTGSGKTLAFGISIATTLLAEKMEFDRPKIPLAIIIAPTRELALQVRKELEWLY 98
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
A+ +C+GG + R + R LESG H+
Sbjct: 99 VRTKAQFASCVGGMDPRAERRTLESGAHI 127
>UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3;
Clostridium difficile|Rep: ATP-dependent RNA helicase -
Clostridium difficile (strain 630)
Length = 497
Score = 65.7 bits (153), Expect = 1e-09
Identities = 27/84 (32%), Positives = 54/84 (64%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
++++ ++++G+GKTA+F+I + + I+ QALI+ PTRELA Q++ + +G
Sbjct: 41 QNLVVRSKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRELALQVKDEISDIGRLKKV 100
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+C A G ++++ I +L+ VH+
Sbjct: 101 RCSAIFGKQSIKDQIAELKQRVHI 124
Score = 57.2 bits (132), Expect = 4e-07
Identities = 26/75 (34%), Positives = 44/75 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D I R ++ +K V+DEAD+M ++GF +Q+ + L + V L SAT
Sbjct: 126 VATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSAT 185
Query: 691 MPDDVLEVSRCFMRD 735
+ +++ + +M D
Sbjct: 186 IDEEIKYICEKYMLD 200
>UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
n=11; Alphaproteobacteria|Rep: Helicase-like:DEAD/DEAH
box helicase-like - Caulobacter sp. K31
Length = 678
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/77 (38%), Positives = 44/77 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D R L ++ V+DEAD ML GF I +FKM Q + SAT
Sbjct: 128 IATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFFSAT 187
Query: 691 MPDDVLEVSRCFMRDPV 741
MP ++ +++ F++DPV
Sbjct: 188 MPPEITRLTKQFLKDPV 204
Score = 51.6 bits (118), Expect = 2e-05
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDH 427
+DV+ AQ+GTGKTA F++ ++ ++ R +AL++APTRELA Q+
Sbjct: 40 QDVLGIAQTGTGKTAAFTLPLIDKLMNGRAKARMPRALVIAPTRELADQVASSFEKYAKG 99
Query: 428 LNAKCHACIGGTNVREDIRQLESGVHV 508
IGG + + ++L+ GV V
Sbjct: 100 TKLSWALLIGGVSFGDQEKKLDRGVDV 126
>UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Petrotoga mobilis SJ95
Length = 530
Score = 65.7 bits (153), Expect = 1e-09
Identities = 33/86 (38%), Positives = 50/86 (58%)
Frame = +2
Query: 245 LHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 424
L + +VI QAQ+GTGKTA F I +++++D + QAL+L PTRELA Q+ + +L
Sbjct: 37 LSGKNNVIGQAQTGTGKTAAFGIPLIERLDEKANDVQALVLTPTRELALQVCNEIDSLKG 96
Query: 425 HLNAKCHACIGGTNVREDIRQLESGV 502
+ GG ++ IR L+ V
Sbjct: 97 NKRLNLLPVYGGVSIGNQIRALKRRV 122
Score = 64.9 bits (151), Expect = 2e-09
Identities = 29/73 (39%), Positives = 44/73 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D + R L IK V+DEADEML GF + + + + + Q+++ SAT
Sbjct: 126 VGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQILMFSAT 185
Query: 691 MPDDVLEVSRCFM 729
MP ++ ++R M
Sbjct: 186 MPQRIVTLARKHM 198
>UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent
RNA helicase; n=4; Bacteroidetes|Rep: RhlE-like DEAD box
family ATP-dependent RNA helicase - Gramella forsetii
(strain KT0803)
Length = 455
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/68 (44%), Positives = 47/68 (69%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TP R+YD++ RRA+ +I+ FV+DE D ML GFK Q++++ ++L + Q I+ SAT
Sbjct: 133 VATPRRLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPKNRQSIMFSAT 192
Query: 691 MPDDVLEV 714
M + V E+
Sbjct: 193 MTETVEEM 200
Score = 53.6 bits (123), Expect = 5e-06
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIREC-QALILAPTRELAQQIQKVVIALGDHLN 433
RDV+ AQ+GTGKT + + +L+ + S ++ + LI+ PTREL Q+ + + L ++N
Sbjct: 47 RDVVGIAQTGTGKTFAYLLPLLRMLKYSEQKNPRILIMVPTRELVVQVVEEIEKLAKYIN 106
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
+ GG N+ + L G+ +
Sbjct: 107 LRVAGVYGGVNINTQHQDLMQGLDI 131
>UniRef50_Q32LU9 Cluster: LOC562123 protein; n=3; Danio rerio|Rep:
LOC562123 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 483
Score = 65.3 bits (152), Expect = 2e-09
Identities = 28/80 (35%), Positives = 50/80 (62%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ +++ ++A+ + ++ V+DEAD ML GF+ Q+ D+ + + D Q +L SAT
Sbjct: 298 IGTPGRLLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPDDHQTLLTSAT 357
Query: 691 MPDDVLEVSRCFMRDPVPHT 750
+P +++ DPV T
Sbjct: 358 IPTGTQQLAERLTHDPVTIT 377
Score = 45.6 bits (103), Expect = 0.001
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQ---QIDTSIRECQA-LILAPTRELAQQIQKVVIALGD 424
RDVIA A +G+GKT F + ++ Q +++ C A LIL PTRELA QI++ L
Sbjct: 208 RDVIATADTGSGKTVAFLLPVVMRALQSESASPSCPACLILTPTRELAIQIEEQAKELMR 267
Query: 425 HL-NAKCHACIGGTNVREDIRQLESGVHV 508
L N +GG + + +L+ + +
Sbjct: 268 GLPNMGTALLVGGMPLPPQLHRLKHNIKI 296
>UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=20;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 418
Score = 65.3 bits (152), Expect = 2e-09
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRE------CQALILAPTRELAQQIQKVVIAL 418
RDV+A AQ+GTGKTA + + ++Q + RE +ALILAPTRELAQQ+ +
Sbjct: 41 RDVLAAAQTGTGKTAAYGLPLIQMLSRQSREETAPKHPRALILAPTRELAQQVFDNLKQY 100
Query: 419 GDHLNAKCHACIGGTNVREDIRQLESGVHV 508
H GGT++R QL GV +
Sbjct: 101 AQHTELAIVTVYGGTSIRVQQEQLAKGVDI 130
Score = 56.0 bits (129), Expect = 1e-06
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D + + N +++ VLDEAD ML GF I + K + + Q +L SAT
Sbjct: 132 IATPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQRIMKRMPEERQTLLFSAT 191
Query: 691 MPDDVLEVSRCFMRDPV 741
V ++ M++PV
Sbjct: 192 FETRVKALAYRLMKEPV 208
>UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE;
n=3; Nitrosomonadaceae|Rep: RhlE; ATP-dependent RNA
helicase RhlE - Nitrosomonas europaea
Length = 498
Score = 65.3 bits (152), Expect = 2e-09
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI----DTSIRECQ----ALILAPTRELAQQIQKVVI 412
+DV+A AQ+GTGKTA F++ +L ++ +TS+ + ALI+APTRELA QI + V
Sbjct: 43 KDVMASAQTGTGKTAGFTLPLLYRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVR 102
Query: 413 ALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
G +L + GG N+ I L++GV +
Sbjct: 103 KYGKYLALRTAVVFGGINIEPQIAALQAGVEI 134
Score = 59.7 bits (138), Expect = 8e-08
Identities = 27/77 (35%), Positives = 47/77 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ ++A++ + ++ VLDEAD ML GF I V +LS Q ++ SAT
Sbjct: 136 VATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLSPQRQSLMFSAT 195
Query: 691 MPDDVLEVSRCFMRDPV 741
++ +++ ++ PV
Sbjct: 196 FSGEIRKLADSLLKQPV 212
>UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10;
Proteobacteria|Rep: DEAD/DEAH box helicase -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 481
Score = 65.3 bits (152), Expect = 2e-09
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALG 421
+DV+A AQ+GTGKTA F++ +LQ++ S + L+L PTRELA+Q+ + IA G
Sbjct: 39 KDVMAGAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYG 98
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
L+ + A GG ++ + +L GV V
Sbjct: 99 KGLDLRFLAAYGGVSINPQMMKLRKGVDV 127
Score = 64.5 bits (150), Expect = 3e-09
Identities = 31/77 (40%), Positives = 46/77 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D+ + A+ + ++ VLDEAD ML GF +++ VF L A Q +L SAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQRQTLLFSAT 188
Query: 691 MPDDVLEVSRCFMRDPV 741
DD+ ++ +R PV
Sbjct: 189 FSDDIRAMAATILRGPV 205
>UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: DEAD/DEAH box
helicase-like protein - Psychroflexus torquis ATCC
700755
Length = 255
Score = 65.3 bits (152), Expect = 2e-09
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV DM R + N+ K+ LDEAD ML GF I + + +++ Q +L SAT
Sbjct: 127 VGTPGRVMDMNERGHIDLNSPKMLCLDEADRMLDMGFFPDIMWIVERMTSRQQTLLFSAT 186
Query: 691 MPDDVLEVSRCFMRDP 738
P ++++ + FM +P
Sbjct: 187 FPQEIIDAAHEFMNEP 202
Score = 61.7 bits (143), Expect = 2e-08
Identities = 33/83 (39%), Positives = 49/83 (59%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
DVI QA++G+GKTA F + IL++ S + QAL+LAPTRELA Q+ + L +
Sbjct: 44 DVIGQARTGSGKTAAFGLPILERCQPS-GKLQALVLAPTRELANQVAQEFELLQGNAGLS 102
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
GGT++ + + L GV +
Sbjct: 103 IVTVYGGTDLEKQAKTLAKGVDI 125
>UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein;
n=7; Actinomycetales|Rep: DEAD/DEAH box helicase domain
protein - Arthrobacter sp. (strain FB24)
Length = 585
Score = 65.3 bits (152), Expect = 2e-09
Identities = 31/76 (40%), Positives = 45/76 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D+ ++ L +K+ +LDEADEML GF + + A Q +L SAT
Sbjct: 170 VGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLGFLPDVETLIAGTPAVRQTLLFSAT 229
Query: 691 MPDDVLEVSRCFMRDP 738
MP V+ ++R +M P
Sbjct: 230 MPGPVIAMARRYMTQP 245
Score = 49.6 bits (113), Expect = 8e-05
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQI----DTSIREC------QALILAPTRELAQQIQKVV 409
D+I QA++GTGKT F I LQ++ D + QAL++ PTRELA Q+ K +
Sbjct: 76 DIIGQAKTGTGKTLGFGIPALQRVVGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDL 135
Query: 410 IALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
NA+ GG + L+ GV +
Sbjct: 136 ENAARKRNARIATIYGGRAYEPQVDSLQKGVEI 168
>UniRef50_Q7K4L8 Cluster: LD33749p; n=1; Drosophila
melanogaster|Rep: LD33749p - Drosophila melanogaster
(Fruit fly)
Length = 703
Score = 65.3 bits (152), Expect = 2e-09
Identities = 31/75 (41%), Positives = 45/75 (60%)
Frame = +1
Query: 517 TPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 696
TPGR+ D+I + +TI VLDEAD ML GF+ QI V + D Q I+ SAT P
Sbjct: 413 TPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATWP 472
Query: 697 DDVLEVSRCFMRDPV 741
V +++ +M++P+
Sbjct: 473 PGVRRLAQSYMKNPI 487
Score = 39.5 bits (88), Expect = 0.089
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSIS--ILQQIDTSIRECQA----LILAPTRELAQQIQKVVIALG 421
D+I AQ+GTGKT F + I + ++ R + L+LAPTRELA QI+ + +
Sbjct: 322 DMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTRGGANVLVLAPTRELALQIE-MEVKKY 380
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
K GG N I LE G +
Sbjct: 381 SFRGMKAVCVYGGGNRNMQISDLERGAEI 409
>UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3;
Platyhelminthes|Rep: DEAD box polypeptide 19 protein -
Dugesia japonica (Planarian)
Length = 434
Score = 65.3 bits (152), Expect = 2e-09
Identities = 30/59 (50%), Positives = 43/59 (72%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 433
+++IAQ+QSGTGKTATF +++L +ID + CQ L +APTREL QI +V I + +N
Sbjct: 88 KNLIAQSQSGTGKTATFLLTMLSKIDVNDPFCQCLCMAPTRELVNQIAEVAIIMSKFMN 146
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
V++F+D+ LK ELL GI + GF KPS+IQ+RA+
Sbjct: 47 VKSFEDLQLKSELLNGISSMGFRKPSSIQERAL 79
Score = 35.9 bits (79), Expect = 1.1
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Frame = +1
Query: 511 VGTPGRVYDMIT-RRALHANT--IKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVIL 678
+GTPG + T +L+ N +K+FVLDEAD ++ + F + + ++ + Q++L
Sbjct: 172 IGTPGTLKFWTTDNSSLYFNPKKLKVFVLDEADILIETPEFLNIAKRIKSKVTNNCQILL 231
Query: 679 LSATMPDDVLEVSRCFMRDP 738
SAT + V++ + F+ P
Sbjct: 232 FSATYDERVMDFAHDFVPQP 251
>UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;
Eukaryota|Rep: ATP-dependent rRNA helicase RRP3 -
Ustilago maydis (Smut fungus)
Length = 551
Score = 65.3 bits (152), Expect = 2e-09
Identities = 36/84 (42%), Positives = 49/84 (58%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RDVI AQ+G+GKTA F+I ILQ + + + A +LAPTRELA QI + V ALG +
Sbjct: 142 RDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGV 201
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ +GG ++ L HV
Sbjct: 202 RSATIVGGMDMMSQSIALSKRPHV 225
Score = 44.0 bits (99), Expect = 0.004
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 687
V TPGR+ D + + ++ V+DEAD +L F I + + + + + +L SA
Sbjct: 227 VATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRTMLFSA 286
Query: 688 TMPDDVLEVSRCFMRDPV 741
TM V ++ R +++PV
Sbjct: 287 TMTTKVAKLQRASLKNPV 304
>UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;
n=14; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 53 - Arabidopsis thaliana (Mouse-ear cress)
Length = 616
Score = 65.3 bits (152), Expect = 2e-09
Identities = 29/77 (37%), Positives = 50/77 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV D++ R AL+ + ++ VLDEAD+ML GF + + + + L Q ++ SAT
Sbjct: 231 VGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSAT 290
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + +++ ++ +P+
Sbjct: 291 MPSWIRSLTKKYLNNPL 307
Score = 57.2 bits (132), Expect = 4e-07
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIAL 418
RD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q++K
Sbjct: 142 RDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRES 201
Query: 419 GDHLNAKCHACIGGTNVREDIRQLESGVHV 508
L+ C GGT + + +RQL+ GV V
Sbjct: 202 APSLDTIC--LYGGTPIGQQMRQLDYGVDV 229
>UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX59;
n=34; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX59 - Homo sapiens (Human)
Length = 619
Score = 65.3 bits (152), Expect = 2e-09
Identities = 28/77 (36%), Positives = 50/77 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D+I + ++ +K+ V+DEAD ML GF+ Q+ D+ + + D Q IL+SAT
Sbjct: 327 IATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSAT 386
Query: 691 MPDDVLEVSRCFMRDPV 741
+P + +++ + +PV
Sbjct: 387 IPTSIEQLASQLLHNPV 403
Score = 50.0 bits (114), Expect = 6e-05
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
RD++A A +G+GKTA F + ++ + + ALIL PTRELA QI++ L L
Sbjct: 241 RDILASADTGSGKTAAFLLPVIMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPR 300
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
K +GG + + +L+ V V
Sbjct: 301 MKTVLLVGGLPLPPQLYRLQQHVKV 325
>UniRef50_Q4AEL1 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=1; Chlorobium phaeobacteroides
BS1|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium phaeobacteroides BS1
Length = 356
Score = 64.9 bits (151), Expect = 2e-09
Identities = 29/65 (44%), Positives = 42/65 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ R L + +K VLDEADEM++ GFK +I ++ K + +L +AT
Sbjct: 25 VATPGRLIDLLNRGVLSLDDLKYLVLDEADEMINMGFKAEIDEILKSCKPAITKLLFTAT 84
Query: 691 MPDDV 705
MP DV
Sbjct: 85 MPKDV 89
>UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4;
Bacteria|Rep: ATP-dependent RNA helicase protein -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 413
Score = 64.9 bits (151), Expect = 2e-09
Identities = 29/77 (37%), Positives = 49/77 (63%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR++D+I ++ + +K+ VLDEAD ML GF I DV K L A Q + SAT
Sbjct: 128 VATPGRMFDLIYQKHIKITRVKILVLDEADHMLDLGFIKDIQDVKKFLPARHQTLFFSAT 187
Query: 691 MPDDVLEVSRCFMRDPV 741
+ +++ +++ +++P+
Sbjct: 188 INEEIKKLAYSLVKNPI 204
Score = 53.2 bits (122), Expect = 7e-06
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGDH 427
DV+A AQ+GTGKTA F I +L + + + L++APTRELA QI +V +G +
Sbjct: 40 DVLAIAQTGTGKTAAFVIPVLNTLINVKKSEHTDISCLVMAPTRELAVQISEVFKKIGAY 99
Query: 428 LNAKCHACIGGTNVREDIRQLESGVHV 508
+ GG I + G+ +
Sbjct: 100 TRLRTVCITGGVEQEAQIAAADYGIDI 126
>UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein;
n=5; Cystobacterineae|Rep: DEAD/DEAH box helicase domain
protein - Anaeromyxobacter sp. Fw109-5
Length = 455
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D + + + I+ VLDEAD ML GFK Q+ + + L Q +L SAT
Sbjct: 126 IATPGRLVDHLEQGNARLDGIEALVLDEADRMLDMGFKPQLDRILRRLPKQRQTLLFSAT 185
Query: 691 MPDDVLEVSRCFMRDPV 741
M +V + +R +RDPV
Sbjct: 186 MAGEVADFARAHLRDPV 202
Score = 48.8 bits (111), Expect = 1e-04
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+DVI A +GTGKTA F + ++ ++ +AL+LAPTRELA QI + + G
Sbjct: 42 KDVIGTAATGTGKTAAFLLPLIDRL-AGKPGTRALVLAPTRELALQIGEELERFGHARRV 100
Query: 437 KCHACIGGTNVREDIRQL 490
+ IGG + + L
Sbjct: 101 RGAVIIGGVGMAQQAEAL 118
>UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5;
Viridiplantae|Rep: DEAD box protein P68 - Pisum sativum
(Garden pea)
Length = 622
Score = 64.9 bits (151), Expect = 2e-09
Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQ--IDTSIRECQ---ALILAPTRELAQQIQKVVIALG 421
RD++ A++G+GKTA F+I +LQ + IR AL+LAPTRELAQQI+K V A
Sbjct: 156 RDLLGCAETGSGKTAAFTIPMLQHCLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFS 215
Query: 422 DHLNA-KCHACIGGTNVREDIRQLESGVHV 508
L + K +GGTN+ + +L +GV +
Sbjct: 216 RSLESLKNCIVVGGTNIEKQRSELRAGVEI 245
Score = 59.7 bits (138), Expect = 8e-08
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR D + + + I VLDEAD ML GF+ QI ++ + L Q +L SAT
Sbjct: 247 VATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSAT 306
Query: 691 MPDDVLEVSRCFMRDPV 741
MP ++ +++ ++ +PV
Sbjct: 307 MPVEIEALAKEYLANPV 323
>UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 508
Score = 64.9 bits (151), Expect = 2e-09
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RD+IA A++G+GKTA+F+I IL Q+ A+IL PTRELA QI + A+G +N
Sbjct: 42 RDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNV 101
Query: 437 KCHACIGG 460
C IGG
Sbjct: 102 NCSVVIGG 109
Score = 34.7 bits (76), Expect = 2.5
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHA-NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV--QVILL 681
V TPGR+ + A K VLDEAD +L F+ +I + + L Q +L
Sbjct: 127 VATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPEKRQTLLF 186
Query: 682 SATMPDDVLEVSRCFMRDP 738
SATM ++ ++ + P
Sbjct: 187 SATMTKNLTKLDSIALNKP 205
>UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA
helicase SA1885; n=13; Staphylococcus|Rep: Probable
DEAD-box ATP-dependent RNA helicase SA1885 -
Staphylococcus aureus (strain N315)
Length = 506
Score = 64.9 bits (151), Expect = 2e-09
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVF-KMLSADVQVILLSA 687
VGTPGRV D + RR L + I +LDEADEM++ GF D + + K+ + Q +L SA
Sbjct: 124 VGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSA 183
Query: 688 TMPDDVLEVSRCFMRDP 738
TMP + + + FM+ P
Sbjct: 184 TMPKAIQALVQQFMKSP 200
Score = 56.4 bits (130), Expect = 7e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D++ QAQ+GTGKT F I +++++ + Q+LILAPTRELA Q+ + + +
Sbjct: 41 DILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQ 99
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
GG + I+ L+ G +
Sbjct: 100 VVTVFGGMPIERQIKALKKGPQI 122
>UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4;
Wolbachia|Rep: Superfamily II DNA/RNA helicase -
Wolbachia sp. subsp. Brugia malayi (strain TRS)
Length = 408
Score = 64.5 bits (150), Expect = 3e-09
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D I R+ L N + VLDE D M GF QI + K L Q ++ SAT
Sbjct: 126 IGTPGRIIDHIERKTLITNNVSTLVLDEVDRMFDMGFGIQIEGIMKYLPKMRQNLMFSAT 185
Query: 691 MPDDVLEVSRCFMRDP 738
+P D+++++ + P
Sbjct: 186 LPGDIVKLAEKYSNQP 201
Score = 50.4 bits (115), Expect = 5e-05
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDHLN 433
+D++ AQ+GTGKT F+I ++ ++ AL++ PTRELAQQ+ ++ L +
Sbjct: 40 KDILGSAQTGTGKTLAFAIPLIAKLLGEPNASTALVIVPTRELAQQVTNEIGKLLLKNSV 99
Query: 434 AKCHACIGGTNVREDIRQLE 493
K IGG + + QL+
Sbjct: 100 LKIALLIGGEPIFRQLNQLQ 119
>UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable
ATP-dependent RNA helicase - Lentisphaera araneosa
HTCC2155
Length = 482
Score = 64.5 bits (150), Expect = 3e-09
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = +1
Query: 517 TPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 696
TPGR+ D+ + L++N I + V+DEAD + GF++ + + K L VQ +L SAT
Sbjct: 130 TPGRLIDIKEQGLLNSNCINMLVIDEADRLFDMGFREAVTSILKDLPKSVQTVLCSATFT 189
Query: 697 DDVLEVSRCFMRDPV 741
DD+ S+ ++ PV
Sbjct: 190 DDIKNFSKTLLKKPV 204
Score = 54.4 bits (125), Expect = 3e-06
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
+D + +A++GTGKTA F+I LQ + ++ Q LIL P REL +QI + I LG L N
Sbjct: 43 QDALVRAKTGTGKTAAFAIPALQHLRAEVQHPQVLILTPGRELCKQISQEFIKLGKGLEN 102
Query: 434 AKCHACIGG 460
+ GG
Sbjct: 103 FRVAEVTGG 111
Score = 35.5 bits (78), Expect = 1.5
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI--QDAMLSLK 275
F D+ LK+ +L IY G++KP+ IQ +++ + QDA++ K
Sbjct: 7 FQDLGLKKTILSAIYTAGYKKPTPIQNKSLKIILQGQDALVRAK 50
>UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific for
23S rRNA; n=1; Lentisphaera araneosa HTCC2155|Rep:
ATP-dependent RNA helicase, specific for 23S rRNA -
Lentisphaera araneosa HTCC2155
Length = 462
Score = 64.5 bits (150), Expect = 3e-09
Identities = 28/77 (36%), Positives = 46/77 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ + + +L + ++ VLDEAD ML GF+D+I + + Q +L SAT
Sbjct: 128 VGTPGRILKHLNKSSLSLDHVRTLVLDEADRMLDMGFQDEIDAIIDQTNKQRQTLLFSAT 187
Query: 691 MPDDVLEVSRCFMRDPV 741
P + +++ M+DP+
Sbjct: 188 YPKKIATIAKRVMKDPL 204
Score = 63.3 bits (147), Expect = 6e-09
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
+D+IAQA++GTGKTA F + +L ++ Q LIL PTREL +Q+ K + L + N
Sbjct: 42 KDLIAQAKTGTGKTAAFGLGVLSKLVLDDYRIQVLILCPTRELCEQVSKAIRDLARMMPN 101
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
K + GG R ++ + G H+
Sbjct: 102 IKLLSLGGGMPFRPQMKSVAHGAHI 126
>UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=195;
cellular organisms|Rep: ATP-independent RNA helicase
dbpA - Escherichia coli (strain K12)
Length = 457
Score = 64.5 bits (150), Expect = 3e-09
Identities = 30/77 (38%), Positives = 43/77 (55%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D + + + + + V+DEAD ML GF D I DV + A Q +L SAT
Sbjct: 127 VATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186
Query: 691 MPDDVLEVSRCFMRDPV 741
P+ + +S RDP+
Sbjct: 187 WPEAIAAISGRVQRDPL 203
Score = 63.3 bits (147), Expect = 6e-09
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 433
+DV QA++G+GKTA F + +LQQID S+ + QAL+L PTRELA Q+ + L L N
Sbjct: 41 KDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPN 100
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
K GG L+ H+
Sbjct: 101 TKILTLCGGQPFGMQRDSLQHAPHI 125
>UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL
protein - Bacillus subtilis
Length = 376
Score = 64.1 bits (149), Expect = 4e-09
Identities = 30/84 (35%), Positives = 53/84 (63%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+DVIA++ +GTGKT +++ +L++I + QA+ILAP+REL QI +V+
Sbjct: 42 KDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAGSEL 101
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ + IGG NV++ + +L+ H+
Sbjct: 102 RAASLIGGANVKKQVEKLKKHPHI 125
Score = 52.8 bits (121), Expect = 9e-06
Identities = 24/76 (31%), Positives = 44/76 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGRV+++I + L + +K VLDE D+++ ++ + + K D Q++ SAT
Sbjct: 127 VGTPGRVFELIKAKKLKMHEVKTIVLDETDQLVLPEHRETMKQIIKTTLRDRQLLCFSAT 186
Query: 691 MPDDVLEVSRCFMRDP 738
+ + +V R ++P
Sbjct: 187 LKKETEDVLRELAQEP 202
>UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=9; Bacteroidetes/Chlorobi
group|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium limicola DSM 245
Length = 499
Score = 64.1 bits (149), Expect = 4e-09
Identities = 30/82 (36%), Positives = 45/82 (54%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D++ + LH I+ FVLDEAD ML GF I + L Q + SAT
Sbjct: 210 IATPGRLLDLMNQGHLHLRNIEFFVLDEADRMLDMGFIHDIRKILAELPKKKQSLFFSAT 269
Query: 691 MPDDVLEVSRCFMRDPVPHTCT 756
MP ++ ++ + +PV + T
Sbjct: 270 MPPEITRLAASILHNPVEVSVT 291
Score = 57.2 bits (132), Expect = 4e-07
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDT-----SIRECQALILAPTRELAQQIQKVVIALGD 424
D++ AQ+GTGKTA F+I +LQ ++ R+ ++LI+ PTRELA QI + A G
Sbjct: 121 DLLGCAQTGTGKTAAFAIPVLQLLNAVKTNEKKRKIRSLIITPTRELAIQIGESFKAYGR 180
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
H GG N L+ G+ +
Sbjct: 181 HTGLTSTVIFGGVNQNPQTASLQKGIDI 208
>UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila
melanogaster|Rep: CG6539-PA - Drosophila melanogaster
(Fruit fly)
Length = 1028
Score = 64.1 bits (149), Expect = 4e-09
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = +2
Query: 254 RRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL-GDHL 430
+ D+I Q++SGTGKT + I+++Q + +I + A+I+ PTRELA Q+Q L
Sbjct: 62 KMDLIIQSKSGTGKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFR 121
Query: 431 NAKCHACIGGTNVREDIRQL 490
+ KC A IGGT+V +D +++
Sbjct: 122 DFKCSAFIGGTDVAKDRKRM 141
Score = 40.3 bits (90), Expect = 0.051
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSA 687
+GTPGR+ + R + ++L VLDEAD++ ++ + + + + + + Q+I SA
Sbjct: 148 IGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIACSA 207
Query: 688 TMPDDVLE 711
T ++ E
Sbjct: 208 TYDQNLDE 215
>UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_383_7421_6129 - Giardia lamblia ATCC
50803
Length = 430
Score = 64.1 bits (149), Expect = 4e-09
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Frame = +2
Query: 254 RRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 430
RRDV+A+A++GTGKT +F I ILQ ++ + QAL+L TRELA Q KV L ++
Sbjct: 58 RRDVVARAKNGTGKTGSFLIPILQMVNPAKDHIQALVLLHTRELAMQTAKVAKTLSKNMP 117
Query: 431 --NAKCHACIGGTNVRED 478
+ IGG ++ ED
Sbjct: 118 DVTGRIMCAIGGVSIAED 135
Score = 41.5 bits (93), Expect = 0.022
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQVILLSA 687
+ TPGR+ +I L+ + VLDEAD +LS+ F I + S Q + SA
Sbjct: 147 LATPGRLQQLIDEEILNFRDCSIVVLDEADMLLSQNFIRSIENCLAACSNKRRQTLFFSA 206
Query: 688 TMPDDVLEVSRCFMRDP 738
T + + E +RDP
Sbjct: 207 TFSNSLKEFCDKHLRDP 223
>UniRef50_Q5BXU1 Cluster: SJCHGC08663 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC08663 protein - Schistosoma
japonicum (Blood fluke)
Length = 193
Score = 64.1 bits (149), Expect = 4e-09
Identities = 29/50 (58%), Positives = 40/50 (80%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 406
+++IAQ+QSGTGKTATF +++L +I T + CQ L +APTRELA QI+ V
Sbjct: 116 QNMIAQSQSGTGKTATFLLAMLSRIRTDVHYCQCLCMAPTRELALQIESV 165
Score = 50.0 bits (114), Expect = 6e-05
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = +3
Query: 141 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQD 257
V TF ++NLKE LL+GI A GF KPS IQ+RA+ I D
Sbjct: 75 VRTFQELNLKEPLLKGIAAMGFYKPSTIQERALSSLISD 113
>UniRef50_Q54T87 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 586
Score = 64.1 bits (149), Expect = 4e-09
Identities = 29/80 (36%), Positives = 49/80 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D++ + H ++++ VLDEAD ML GF QI + + + Q ++ SAT
Sbjct: 239 IGTPGRLNDLLRKH--HLSSVQYLVLDEADRMLDMGFMPQIESLIDQIPKERQTLMFSAT 296
Query: 691 MPDDVLEVSRCFMRDPVPHT 750
P +V ++ F++DP+ T
Sbjct: 297 WPKEVKLLASKFLKDPIKIT 316
Score = 38.3 bits (85), Expect = 0.21
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIALG 421
D++ A +G+GKT F + L +I + + L++APTRELAQQI++V
Sbjct: 149 DLVGLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLVLVMAPTRELAQQIEEVCKTSI 208
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ + GG + R L +GV +
Sbjct: 209 RGTSIRQLCAYGGLGKIDQSRILRNGVDI 237
>UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma
gondii|Rep: DEAD box RNA helicase - Toxoplasma gondii
Length = 479
Score = 64.1 bits (149), Expect = 4e-09
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RD+IA A++G+GKTA F + ILQ++ + ALILAPTREL QI + ++A+G L
Sbjct: 89 RDIIALAETGSGKTAAFGLPILQRLLQRTQRFYALILAPTRELCLQISQQILAMGGTLGV 148
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+GG + L HV
Sbjct: 149 TVVTLVGGLDHNTQAIALAKKPHV 172
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +1
Query: 511 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS--ADVQVILL 681
VG+PGRV D + + + ++K+ VLDEAD +LS F + + + + A+ Q +L
Sbjct: 174 VGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTMLF 233
Query: 682 SATMPDDVLEVSRCFMRDPV 741
SATM V ++ + ++ PV
Sbjct: 234 SATMTTKVSKLQKASLKKPV 253
>UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
DHH1 - Encephalitozoon cuniculi
Length = 489
Score = 64.1 bits (149), Expect = 4e-09
Identities = 29/84 (34%), Positives = 55/84 (65%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
++++ ++++GTGKTA++ + +L I++S Q +IL P RELA QI + V + +
Sbjct: 146 KNLLVRSKNGTGKTASYIVPMLNMINSSELSIQGIILVPIRELALQISRNVKRMSEGTGV 205
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+GGT++++DI ++ +GVHV
Sbjct: 206 ISAPVVGGTSMQDDIIRVSNGVHV 229
Score = 53.2 bits (122), Expect = 7e-06
Identities = 26/77 (33%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D++ +R + + V DEAD++L F + + + +L + Q++L SAT
Sbjct: 231 VGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLDVTFGETVTKLLDLLPREKQMLLYSAT 290
Query: 691 MPDDVLEVSRCFMRDPV 741
P V R +M++P+
Sbjct: 291 FPYFVTGFIRRYMKNPL 307
>UniRef50_UPI00003937F7 Cluster: COG0513: Superfamily II DNA and RNA
helicases; n=1; Bifidobacterium longum DJO10A|Rep:
COG0513: Superfamily II DNA and RNA helicases -
Bifidobacterium longum DJO10A
Length = 670
Score = 63.7 bits (148), Expect = 5e-09
Identities = 30/79 (37%), Positives = 48/79 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V PGR+ D++ ++AL +++++ V+DEADEM GF + + + +S D Q +L SAT
Sbjct: 164 VACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSAT 223
Query: 691 MPDDVLEVSRCFMRDPVPH 747
+ V EV F+ DP H
Sbjct: 224 LDHGVDEVVNTFLHDPKVH 242
Score = 38.7 bits (86), Expect(2) = 4e-04
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +2
Query: 323 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 502
++ D + + L+LAPTRELA QI V++ L GG IR L++G
Sbjct: 101 RRADDFLPHPRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAGA 160
Query: 503 HV 508
+
Sbjct: 161 DI 162
Score = 27.9 bits (59), Expect(2) = 4e-04
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI 331
RD++ + ++G+GKT FSI ++ ++
Sbjct: 48 RDILGRGRTGSGKTLAFSIPLVTRL 72
>UniRef50_Q8G5U3 Cluster: Possible ATP-dependent RNA helicase; n=3;
Bifidobacterium|Rep: Possible ATP-dependent RNA helicase
- Bifidobacterium longum
Length = 728
Score = 63.7 bits (148), Expect = 5e-09
Identities = 30/79 (37%), Positives = 48/79 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V PGR+ D++ ++AL +++++ V+DEADEM GF + + + +S D Q +L SAT
Sbjct: 180 VACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSAT 239
Query: 691 MPDDVLEVSRCFMRDPVPH 747
+ V EV F+ DP H
Sbjct: 240 LDHGVDEVVNTFLHDPKVH 258
Score = 38.7 bits (86), Expect(2) = 4e-04
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +2
Query: 323 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 502
++ D + + L+LAPTRELA QI V++ L GG IR L++G
Sbjct: 117 RRADDFLPHPRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAGA 176
Query: 503 HV 508
+
Sbjct: 177 DI 178
Score = 27.9 bits (59), Expect(2) = 4e-04
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI 331
RD++ + ++G+GKT FSI ++ ++
Sbjct: 64 RDILGRGRTGSGKTLAFSIPLVTRL 88
>UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1;
Acidobacteria bacterium Ellin345|Rep: DEAD/DEAH box
helicase-like - Acidobacteria bacterium (strain
Ellin345)
Length = 423
Score = 63.7 bits (148), Expect = 5e-09
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Frame = +2
Query: 215 FCNPA-TRNNALHPR---RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTR 379
F NP + A+ P RD++A AQ+GTGKT F I L+ + DT Q LIL PTR
Sbjct: 47 FINPTPVQEKAIPPALDGRDILATAQTGTGKTLAFIIPALEMLRDTEPCGVQVLILVPTR 106
Query: 380 ELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
ELA Q+ V L +GGT+ R I+ + SG V
Sbjct: 107 ELAMQVHGVYEQLKGKKLKSAALVMGGTSERNQIQSIRSGARV 149
Score = 53.2 bits (122), Expect = 7e-06
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D + RR + + +++ VLDEAD M+ GF I + + L D Q + SAT
Sbjct: 151 VATPGRLEDYMGRRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILRALPRDKQTLCFSAT 210
Query: 691 M 693
M
Sbjct: 211 M 211
>UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;
Sulfurovum sp. NBC37-1|Rep: ATP-independent RNA helicase
DbpA - Sulfurovum sp. (strain NBC37-1)
Length = 453
Score = 63.7 bits (148), Expect = 5e-09
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D + + L +IK VLDEAD ML GF ++I + + Q +L SAT
Sbjct: 127 IGTPGRIQDHLAKGTLTLESIKTLVLDEADRMLDMGFYEEIIKIGSNMPKQKQTLLFSAT 186
Query: 691 MPDDVLEVSRCFMRDPV 741
P + +++ ++DP+
Sbjct: 187 FPPKIESLAKALLKDPL 203
Score = 54.8 bits (126), Expect = 2e-06
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LN 433
+D++AQ+++G+GKT F I + D + Q +++ PTRELA+Q+ + + + N
Sbjct: 41 KDILAQSKTGSGKTLAFGIPAVMGTDVKSNKPQTIVITPTRELAEQVAMELRKIAAYKAN 100
Query: 434 AKCHACIGGTNVREDIRQLESGVHV 508
K GG +R L G H+
Sbjct: 101 LKILTLYGGVPLRAQADSLAKGAHI 125
>UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n=4;
Eukaryota|Rep: ATP-dependent RNA helicase, putative -
Theileria parva
Length = 470
Score = 63.7 bits (148), Expect = 5e-09
Identities = 32/84 (38%), Positives = 52/84 (61%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+D+I A++G+GKTA F+I ILQ++ + +LILAPTREL+ QI++ +I+LG +
Sbjct: 79 KDIIGLAETGSGKTAAFTIPILQKLLEKPQRLFSLILAPTRELSLQIKEQLISLGSEIGL 138
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+GG ++ QL H+
Sbjct: 139 DVCLILGGLDMVSQALQLSKKPHI 162
Score = 54.0 bits (124), Expect = 4e-06
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 687
VG+PGR+ D + + TIK VLDEAD++LS F D ++ + L D L SA
Sbjct: 164 VGSPGRIADHLQNTKGFSLETIKYLVLDEADKLLSTDFDDSLNKIITSLPKDKVTYLYSA 223
Query: 688 TMPDDVLEVSRCFMRDPV 741
TM + ++ + + P+
Sbjct: 224 TMTSKITKLQKVTLMKPI 241
>UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55;
Eukaryota|Rep: Spliceosome RNA helicase BAT1 - Homo
sapiens (Human)
Length = 428
Score = 63.7 bits (148), Expect = 5e-09
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKMLSADVQVILLSA 687
VGTPGR+ + ++L+ IK F+LDE D+ML + + + ++F+M + QV++ SA
Sbjct: 170 VGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSA 229
Query: 688 TMPDDVLEVSRCFMRDPV 741
T+ ++ V R FM+DP+
Sbjct: 230 TLSKEIRPVCRKFMQDPM 247
Score = 54.8 bits (126), Expect = 2e-06
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
DV+ QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K ++ N
Sbjct: 84 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 143
Query: 437 KCHACIGGTNVRED 478
K GG ++++D
Sbjct: 144 KVAVFFGGLSIKKD 157
Score = 33.1 bits (72), Expect = 7.8
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQDAMLSL 272
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 47 FRDFLLKPELLRAIVDCGFEHPSEVQHE----CIPQAILGM 83
>UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7;
Ascomycota|Rep: ATP-dependent RNA helicase DBP5 -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 504
Score = 63.7 bits (148), Expect = 5e-09
Identities = 31/59 (52%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Frame = +2
Query: 248 HPRRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALG 421
+P R++IAQ+QSGTGKT F ++IL ++D + QAL LAP+RELA+QIQ V+ ++G
Sbjct: 133 NPPRNMIAQSQSGTGKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQSIG 191
Score = 62.9 bits (146), Expect = 8e-09
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 487 TGEWCSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSAD 663
TG + VGTPG V D+I RR + +KL V+DEAD ML +G +Q V ML
Sbjct: 211 TGVKANVVVGTPGTVMDLIRRRQFDVSQLKLLVVDEADNMLDQQGLGEQCVRVKNMLPKT 270
Query: 664 VQVILLSATMPDDVLEVSRCF 726
+Q +L SAT PD V + F
Sbjct: 271 IQTLLFSATFPDHVKSYAEKF 291
>UniRef50_UPI0000E49D13 Cluster: PREDICTED: similar to DEAD
(Asp-Glu-Ala-Asp) box polypeptide 59; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 -
Strongylocentrotus purpuratus
Length = 620
Score = 63.3 bits (147), Expect = 6e-09
Identities = 28/77 (36%), Positives = 47/77 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ ++I + + + IKL +DE D ML GF+ Q++D+ L + Q I SAT
Sbjct: 352 VGTPGRIMEIIKQEGVCLSEIKLVAIDEVDTMLQLGFQQQVYDIMTHLPDNHQTIFTSAT 411
Query: 691 MPDDVLEVSRCFMRDPV 741
+P + +++ + +PV
Sbjct: 412 IPSSIEKMASSLLSNPV 428
>UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3); n=1; Apis mellifera|Rep: PREDICTED: similar
to Probable ATP-dependent RNA helicase DDX20 (DEAD box
protein 20) (DEAD box protein DP 103) (Component of gems
3) (Gemin-3) - Apis mellifera
Length = 648
Score = 63.3 bits (147), Expect = 6e-09
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
D+I +A+SGTGKT F I L+ ID I Q LILAPTRE+A QI +V ++G + +
Sbjct: 35 DLIMRAKSGTGKTLVFCIISLEMIDIDISSVQVLILAPTREIAVQIAQVFSSVGCEIKDL 94
Query: 437 KCHACIGGTNVREDIRQLES 496
K IGG + D +++ +
Sbjct: 95 KVEVFIGGLAIENDKKKVNN 114
Score = 63.3 bits (147), Expect = 6e-09
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C VG PGR+ +I + L ++LFVLDEAD+++ F+ I+ +F L QVI
Sbjct: 115 CQIAVGAPGRIRHLIDKGFLKVENVRLFVLDEADKLMETSFQKDINYIFSKLPLSKQVIA 174
Query: 679 LSATMPDDVLEVSRCFMRDPV 741
SAT P D+ + +M PV
Sbjct: 175 SSATYPGDLEIFLQTYMCSPV 195
>UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 585
Score = 63.3 bits (147), Expect = 6e-09
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQIQKVVI 412
RD+IA A++GTGKT + I ++Q + +TS AL+LAPTRELA QIQK +
Sbjct: 214 RDLIALAETGTGKTFAYLIPLIQFVLKLPKLTEETSASGPYALVLAPTRELALQIQKETL 273
Query: 413 ALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
L + CIGG ++ I +L +G +
Sbjct: 274 KLATPFGLRVCCCIGGEPMQPQIEELSNGAEI 305
Score = 35.1 bits (77), Expect = 1.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 654
V PGR+ D++ + L VLDEAD+M+ G Q+ +F L
Sbjct: 307 VAAPGRLKDLLNQSYLVLGQCYFVVLDEADKMIDLGLDVQVRYIFSEL 354
>UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=6; Vibrio|Rep: ATP-dependent RNA helicase,
DEAD box family - Vibrio parahaemolyticus
Length = 421
Score = 63.3 bits (147), Expect = 6e-09
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHL 430
+D++A AQ+GTGKTA F + I+Q + R ALIL PTRELAQQ+ + +H
Sbjct: 45 KDLLAAAQTGTGKTAAFGLPIIQAVQQKKRNGTPHALILVPTRELAQQVFDNLTQYAEHT 104
Query: 431 NAKCHACIGGTNVREDIRQLESGVHV 508
+ + GGT++ +LE G +
Sbjct: 105 DLRIVCVYGGTSIGVQKNKLEEGADI 130
Score = 50.4 bits (115), Expect = 5e-05
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = +1
Query: 493 EWCSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 672
E + TPGR+ D + ++ + + VLDEAD ML GF + + + L D Q+
Sbjct: 126 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQI 185
Query: 673 ILLSATMPDDVLEVSRCFMRDPV 741
+L SAT + ++ M PV
Sbjct: 186 MLFSATFEKRIKTIAYKLMDSPV 208
>UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain; n=18;
Pseudomonadaceae|Rep: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain - Azotobacter
vinelandii AvOP
Length = 575
Score = 63.3 bits (147), Expect = 6e-09
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
D+I QAQ+GTGKTA F++ +L +ID + RE Q LILAPTRELA Q+ L
Sbjct: 62 DMIGQAQTGTGKTAAFALPMLSRIDPARREPQLLILAPTRELALQVATAFETYASQLPGV 121
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
A GG + ++ L G +
Sbjct: 122 GVVAVYGGAPMGPQLKALRQGAQI 145
Score = 63.3 bits (147), Expect = 6e-09
Identities = 30/76 (39%), Positives = 44/76 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D + R +T+K VLDEADEML GF + + +F L Q +L SAT
Sbjct: 147 VATPGRLCDHLRRDEQLLSTVKHLVLDEADEMLKLGFMEDLEVIFAALPESRQTVLFSAT 206
Query: 691 MPDDVLEVSRCFMRDP 738
+P + E++ + +P
Sbjct: 207 LPHSIREIAEKHLHEP 222
>UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: Putative ATP-dependent
RNA helicase - Neptuniibacter caesariensis
Length = 427
Score = 63.3 bits (147), Expect = 6e-09
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTS----IRECQALILAPTRELAQQIQKVVIALGDH 427
D++A+AQ+GTGKTA+F++ I++++ + R +AL+LAPTRELA Q+ + G
Sbjct: 43 DLLAEAQTGTGKTASFALPIIEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRD 102
Query: 428 LNAKCHACIGGTNVREDIRQLESGVHV 508
L + + GG V I++L+ G +
Sbjct: 103 LGMRVISVYGGVPVENQIKRLKRGTDI 129
Score = 57.2 bits (132), Expect = 4e-07
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ ++A+ ++ VLDEAD ML GF D I + + D Q +L +AT
Sbjct: 131 VATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDRQTLLFTAT 190
Query: 691 MPDDVLEVSRCFMRDP 738
+ V ++ ++ +P
Sbjct: 191 ADESVEVLAEFYLNNP 206
>UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 387
Score = 63.3 bits (147), Expect = 6e-09
Identities = 31/79 (39%), Positives = 46/79 (58%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+D+IA++ +GTGKT + I IL +ID + QA+ILAP+ ELA QI + + N
Sbjct: 48 KDLIAESPTGTGKTLAYLIPILHRIDPESKAVQAVILAPSHELAMQIHQTIEKWTKDNNI 107
Query: 437 KCHACIGGTNVREDIRQLE 493
IGG N++ I L+
Sbjct: 108 SSEPLIGGANIKRQIENLK 126
Score = 41.1 bits (92), Expect = 0.029
Identities = 17/76 (22%), Positives = 41/76 (53%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V T GR+ ++I + + + +K V+DE D +++ + + + K + Q++ SAT
Sbjct: 133 VATTGRLLEVIKLKKIKMHEVKTIVVDEFDILIAEEHAENLKHIIKTTLKERQIVCFSAT 192
Query: 691 MPDDVLEVSRCFMRDP 738
+ ++ ++ M++P
Sbjct: 193 ISENTEQIGMELMKEP 208
>UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH box
family protein; n=16; Staphylococcus|Rep: ATP-dependent
RNA helicase DEAD/DEAH box family protein -
Staphylococcus aureus (strain Newman)
Length = 448
Score = 63.3 bits (147), Expect = 6e-09
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = +2
Query: 254 RRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD-HL 430
R ++I Q+Q+GTGK+ F + ++Q ID+ I+E QA+++APTRELAQQ+ L
Sbjct: 41 RTNLIGQSQTGTGKSHAFLLPLMQLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKA 100
Query: 431 NAKCHACIGGTNVRED 478
IGGT++ +D
Sbjct: 101 GVSVKVFIGGTDIEKD 116
Score = 43.2 bits (97), Expect = 0.007
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTP R+ D+ LH + V+DEAD M+ G + + + L + + + SAT
Sbjct: 128 IGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIAVFSAT 187
Query: 691 MPDDVLEVSRCFMRDP 738
+P + ++ P
Sbjct: 188 IPQQLQPFLNKYLSHP 203
>UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein;
n=132; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 578
Score = 63.3 bits (147), Expect = 6e-09
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D+ ++A+ N +++ VLDEAD ML GF I + ML A Q ++ SAT
Sbjct: 128 VATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQNLMFSAT 187
Query: 691 MPDDVLEVSRCFMRDPVPHTCT 756
D++ E+++ + PV + T
Sbjct: 188 FSDEIRELAKGLVNQPVEISVT 209
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVVIALGD 424
+DV+A AQ+GTGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V G
Sbjct: 39 KDVMAAAQTGTGKTAGFTLPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGK 98
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
+L + GG + I++L GV V
Sbjct: 99 YLPLRSAVVFGGVPINPQIQKLRHGVDV 126
>UniRef50_A2WLP5 Cluster: Putative uncharacterized protein; n=3;
Magnoliophyta|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 523
Score = 63.3 bits (147), Expect = 6e-09
Identities = 31/76 (40%), Positives = 43/76 (56%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ DMI + I VLDEAD ML GF+ QI + + D Q + SAT
Sbjct: 195 IATPGRLIDMIESHHTNLRRITYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSAT 254
Query: 691 MPDDVLEVSRCFMRDP 738
P +V +++R F+ DP
Sbjct: 255 WPKEVEQLARNFLFDP 270
Score = 35.5 bits (78), Expect = 1.5
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALG 421
RD+I A++G+GKT + + + ++ L+LAPTRELA QIQ+ G
Sbjct: 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFG 190
>UniRef50_Q234J0 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 744
Score = 63.3 bits (147), Expect = 6e-09
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD-----VQVI 675
VGTPGR+ D R AL ++I VLDEAD+ML+ GF++ I +F + D Q +
Sbjct: 200 VGTPGRIIDQYERGALMFHSIIATVLDEADQMLNFGFQEDIEKIFGFIKNDKGEERPQNL 259
Query: 676 LLSATMPDDVLEVSRCFMRD 735
L SATMP V +++R F+R+
Sbjct: 260 LFSATMPSWVHDIARKFLRE 279
Score = 46.4 bits (105), Expect = 8e-04
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Frame = +2
Query: 242 ALHPRRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQA---LILAPTRELAQQI 397
A+ +D+I + ++G+GKT FS+ +++++ TSI++ Q L++ PTREL Q+
Sbjct: 101 AIQAGKDLIGKDRTGSGKTLGFSLPLIEKLRNEGNFTSIKKKQTPYMLVVVPTRELCIQV 160
Query: 398 QKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGVHV 508
+ L N + GG +VRE Q+ GV +
Sbjct: 161 ANEINTLKHTDNEFRVLQIYGGVDVREQANQIRDGVEI 198
>UniRef50_A7U5W8 Cluster: DEAD-box helicase 5; n=6; Plasmodium|Rep:
DEAD-box helicase 5 - Plasmodium falciparum
Length = 755
Score = 63.3 bits (147), Expect = 6e-09
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +1
Query: 514 GTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQVILLSAT 690
GTPGR+ D I ++ L IK VLDEADEML+ GF I + ++ + QV+L SAT
Sbjct: 313 GTPGRIIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQVLLYSAT 372
Query: 691 MPDDVLEVSRCFMRDP 738
P + ++S ++++P
Sbjct: 373 TPSWIKDISSKYLKNP 388
>UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1;
uncultured methanogenic archaeon RC-I|Rep: ATP-dependent
RNA helicase - Uncultured methanogenic archaeon RC-I
Length = 497
Score = 63.3 bits (147), Expect = 6e-09
Identities = 30/84 (35%), Positives = 50/84 (59%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+D+I QA++GTGKTA F I +++ I + + Q L++ PTRELA Q+ + + +G
Sbjct: 40 KDLIGQARTGTGKTAAFGIPMVEAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGI 99
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ A GG + R ++ LE H+
Sbjct: 100 RSVAIYGGQDFRSQVKALEELPHI 123
Score = 63.3 bits (147), Expect = 6e-09
Identities = 30/76 (39%), Positives = 47/76 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ + + R + + I++ VLDEAD+ML GF D+ + K L Q +L SAT
Sbjct: 125 VGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLLFSAT 184
Query: 691 MPDDVLEVSRCFMRDP 738
+ V ++R +++DP
Sbjct: 185 LSPPVQMLARKYLKDP 200
>UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhlE;
n=122; cellular organisms|Rep: Putative ATP-dependent
RNA helicase rhlE - Escherichia coli (strain K12)
Length = 454
Score = 63.3 bits (147), Expect = 6e-09
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDT------SIRECQALILAPTRELAQQIQKVVIAL 418
RD++A AQ+GTGKTA F++ +LQ + T R +ALIL PTRELA QI + V
Sbjct: 39 RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98
Query: 419 GDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+LN + GG ++ + +L GV V
Sbjct: 99 SKYLNIRSLVVFGGVSINPQMMKLRGGVDV 128
Score = 58.0 bits (134), Expect = 2e-07
Identities = 29/77 (37%), Positives = 44/77 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D+ + A+ + +++ VLDEAD ML GF I V L A Q +L SAT
Sbjct: 130 VATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSAT 189
Query: 691 MPDDVLEVSRCFMRDPV 741
DD+ ++ + +P+
Sbjct: 190 FSDDIKALAEKLLHNPL 206
>UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Pseudomonas aeruginosa
Length = 397
Score = 63.3 bits (147), Expect = 6e-09
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +1
Query: 496 WCSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADVQ 669
+C V TPGR+ D R +H + +++ VLDEAD ML GF Q+ + + + Q
Sbjct: 135 FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 194
Query: 670 VILLSATMPDDVLEVSRCFMRDP 738
+L SAT DDV+ +++ + DP
Sbjct: 195 TLLFSATFTDDVMNLAKQWTVDP 217
Score = 59.7 bits (138), Expect = 8e-08
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQKVVIA 415
+D I +AQ+GTGKTA F ISI+ Q+ + + E +ALI+APTREL QI K A
Sbjct: 47 QDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 106
Query: 416 LGDHLNAKCHACIGGTNVREDIRQLES 496
L + +GG + + ++QLE+
Sbjct: 107 LTKYTGLNVMTFVGGMDFDKQLKQLEA 133
>UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;
n=27; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
15 - Arabidopsis thaliana (Mouse-ear cress)
Length = 427
Score = 63.3 bits (147), Expect = 6e-09
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSA 687
VGTPGRV + + L ++ F+LDE D+ML S + + ++FKM D QV++ SA
Sbjct: 171 VGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230
Query: 688 TMPDDVLEVSRCFMRDPV 741
T+ ++ V + FM+DP+
Sbjct: 231 TLSKEIRPVCKKFMQDPM 248
Score = 60.1 bits (139), Expect = 6e-08
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 85 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 144
Query: 437 KCHACIGGTNVR 472
K GG N++
Sbjct: 145 KVSVFYGGVNIK 156
Score = 33.1 bits (72), Expect = 7.8
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 150 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQDAMLSL 272
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHE----CIPQAILGM 84
>UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;
Eukaryota|Rep: ATP-dependent RNA helicase DDX39 - Homo
sapiens (Human)
Length = 427
Score = 63.3 bits (147), Expect = 6e-09
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKMLSADVQVILLSA 687
VGTPGR+ ++ R+ +K FVLDE D+ML + + + ++F++ + Q ++ SA
Sbjct: 169 VGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSA 228
Query: 688 TMPDDVLEVSRCFMRDPV 741
T+ D+ V R FM+DP+
Sbjct: 229 TLSKDIRPVCRKFMQDPM 246
Score = 52.8 bits (121), Expect = 9e-06
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 436
DV+ QA+SG GKTA F ++ LQQI+ + L++ TRELA QI K ++ +
Sbjct: 83 DVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSV 142
Query: 437 KCHACIGGTNVRED 478
K GG ++++D
Sbjct: 143 KVSVFFGGLSIKKD 156
Score = 34.7 bits (76), Expect = 2.5
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 48 DSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET-FDDMNLKEELLRGIYAYGFEKPSAI 224
D + P Q S PP D + + + + F D LK ELLR I GFE PS +
Sbjct: 14 DEEEEPQAPQESTPAPPKKD---IKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEV 70
Query: 225 QQRAIMPCIQDAMLSL 272
Q CI A+L +
Sbjct: 71 QHE----CIPQAILGM 82
>UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 684
Score = 62.9 bits (146), Expect = 8e-09
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNA 436
D+IA A++G+GKTA + + I+ +++T E ++LI+ PTRELA Q KV LG N
Sbjct: 52 DIIAMARTGSGKTAAYLVPIINRLETHSTEGVRSLIICPTRELALQTIKVFNELGKLTNL 111
Query: 437 KCHACIGGTNVREDIRQLESG 499
K IGG+ + + L SG
Sbjct: 112 KASLIIGGSKLSDQFDNLSSG 132
Score = 56.8 bits (131), Expect = 6e-07
Identities = 25/76 (32%), Positives = 44/76 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ ++ + N +++ DEAD M GF +Q+ D+ +ML Q++L SAT
Sbjct: 137 VATPGRLTFILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTRQILLFSAT 196
Query: 691 MPDDVLEVSRCFMRDP 738
+P ++ E + ++ P
Sbjct: 197 LPRNLAEFLKNTLKQP 212
>UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2;
Bacillaceae|Rep: ATP-dependent RNA helicase -
Oceanobacillus iheyensis
Length = 432
Score = 62.9 bits (146), Expect = 8e-09
Identities = 28/77 (36%), Positives = 48/77 (62%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D++ AL T K FV+DEAD ML GF +++ + D+Q+++ SAT
Sbjct: 128 VGTPGRILDLVKSGALSIYTAKSFVVDEADLMLDLGFIEEVDQLLVRSKQDIQLLVFSAT 187
Query: 691 MPDDVLEVSRCFMRDPV 741
+P + + ++++P+
Sbjct: 188 IPQRLQHFFKKYIKNPL 204
Score = 48.4 bits (110), Expect = 2e-04
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +2
Query: 263 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQ---KVVIALGDHLN 433
V+ Q+++G+GKT F + + +++ +E Q +I APTRELA Q+ + +I L D
Sbjct: 41 VVGQSRTGSGKTHAFLLPLFHGLESDKKEVQFVITAPTRELATQLYGEVRNIITLADKTK 100
Query: 434 A-KCHACIGGTNVREDIRQLESGVHV 508
+GGT+ ++ +L++ H+
Sbjct: 101 EWNAKLLVGGTDKQKMTEKLKTPPHI 126
>UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2;
Synechococcus|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 458
Score = 62.9 bits (146), Expect = 8e-09
Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVVIALGD 424
+D++A AQ+GTGKTA F + I++ + + + +L+L PTRELA Q++ A
Sbjct: 62 KDIMASAQTGTGKTAAFILPIIELLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTK 121
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
+L + A GG ++R +++L+ GV +
Sbjct: 122 YLALRSDAVFGGVSIRPQVKRLQGGVDI 149
Score = 57.6 bits (133), Expect = 3e-07
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D+I ++ + + +K+ VLDEAD ML GF I V + L + Q ++ SAT
Sbjct: 151 VATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQNMMFSAT 210
Query: 691 MPDDVLEVSRCFMRDPV 741
+ +++ + DPV
Sbjct: 211 FSTPIKKLALGLLNDPV 227
>UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: ATP-dependent RNA helicase -
Oceanobacter sp. RED65
Length = 475
Score = 62.9 bits (146), Expect = 8e-09
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQIQKVVIAL 418
RD+I +AQ+GTGKTA F I++LQ++ T E +ALILAPTRELA QI K L
Sbjct: 136 RDIIGKAQTGTGKTAAFLITVLQKLLTVKPEERFASEPRALILAPTRELAMQIAKDADGL 195
Query: 419 GDHLNAKCHACIGGTNVREDIRQLESGV 502
+ + +GG + + QLE+ V
Sbjct: 196 SKYADLNIVTVLGGVDYDKQKEQLENEV 223
Score = 46.0 bits (104), Expect = 0.001
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADVQVILLS 684
V TPGR+ D + + ++ + +++ V+DEAD ML GF + + + + Q L S
Sbjct: 228 VATPGRLLDYLQQGIVYLDQVEMLVIDEADRMLDMGFIPDLKRIIRGTPEKSIRQTQLFS 287
Query: 685 ATMPDDVLEVSRCFMRDP 738
AT P DV+ +S + P
Sbjct: 288 ATYPYDVVALSESWTYKP 305
>UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA
helicase; n=2; Bacteria|Rep: Cold-shock DeaD box
ATP-dependent RNA helicase - Frankia alni (strain
ACN14a)
Length = 608
Score = 62.9 bits (146), Expect = 8e-09
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDH 427
RD++ QA +GTGKTA F++ +L ++ T QAL+L PTRELA Q+ + + G
Sbjct: 95 RDLLGQAATGTGKTAAFALPLLHRLTDDRTGDHGPQALVLVPTRELAVQVSEAIHRYGRD 154
Query: 428 LNAKCHACIGGTNVREDIRQLESGVHV 508
L A+ GG + +R L GV V
Sbjct: 155 LGARVLPVYGGAPIGRQVRALVQGVDV 181
Score = 62.5 bits (145), Expect = 1e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR D + R L + + VLDEADEML GF + I + + Q +L SAT
Sbjct: 183 VATPGRALDHMGRGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVLFSAT 242
Query: 691 MPDDVLEVSRCFMRDPV 741
+P + +++R +RDPV
Sbjct: 243 LPPRMDQIARRHLRDPV 259
Score = 37.5 bits (83), Expect = 0.36
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +3
Query: 120 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 251
D D + V F ++ L+ ELLR + A G+E+P+ IQ+ A+ P +
Sbjct: 49 DIDPAEDVAGFAELALRPELLRSLAALGYEEPTPIQREAVPPLV 92
>UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Blastopirellula marina DSM 3645
Length = 447
Score = 62.9 bits (146), Expect = 8e-09
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQID---TSIREC--QALILAPTRELAQQIQKVVIALGD 424
D+I AQ+GTGKTA F++ IL Q+D + C Q L+L+PTRELA QI + G
Sbjct: 35 DLIGCAQTGTGKTAAFALPILNQLDLDRSRADACAPQVLVLSPTRELAVQIAQSFNVYGR 94
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
++ + GG +R L+ GVHV
Sbjct: 95 NVKFRLTTIFGGVGQNPQVRALKRGVHV 122
Score = 56.8 bits (131), Expect = 6e-07
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D++ + + + K FVLDEAD ML GF + + L Q I +AT
Sbjct: 124 IATPGRLLDLMDQGYVDLSQAKTFVLDEADRMLDMGFMPALKTIVSKLPKQRQTIFFTAT 183
Query: 691 MPDDVLEVSRCFMRDPV 741
MP V +++ + +PV
Sbjct: 184 MPPKVAQLASGLLNNPV 200
>UniRef50_Q55RL6 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 606
Score = 62.9 bits (146), Expect = 8e-09
Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 6/85 (7%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQA----LILAPTRELAQQIQKVVIALGDH 427
DV+AQA++GTGKT F + ++Q++ ++ A LIL+PTRELAQQI +V +
Sbjct: 106 DVLAQAKTGTGKTLAFLVPVVQRLLSAPMPPSALTSILILSPTRELAQQINEVAERMSTA 165
Query: 428 LNAK--CHACIGGTNVREDIRQLES 496
L+ K + +GGTN+ DI+ L+S
Sbjct: 166 LSKKFGTRSVVGGTNMDRDIKNLKS 190
Score = 50.0 bits (114), Expect = 6e-05
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHAN--TIKLFVLDEADEMLSRGFKDQIHDVFKMLSA----DVQV 672
V TPGR+ D++ + A +K+ VLDEAD +L GF+ ++ +F L A Q
Sbjct: 197 VATPGRLLDLMENGGIKARFAQLKMIVLDEADRLLDAGFRRELVKIFDYLPAPHAVPRQT 256
Query: 673 ILLSATMPDDVLEVSRCFMR 732
+L SAT+P +V ++ +R
Sbjct: 257 LLFSATLPTEVHSIASIALR 276
>UniRef50_UPI00006CBDDC Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 598
Score = 62.5 bits (145), Expect = 1e-08
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISI----LQQIDTSIREC-QALILAPTRELAQQIQKVVIALGD 424
D+ +AQ+G+GKT F + I ++Q+ T+ + C AL++APTRELA+QI ++ + L
Sbjct: 48 DLAVEAQTGSGKTLAFLLPIFNVLIKQVKTANKNCVYALVIAPTRELAKQIHEIAVQLAS 107
Query: 425 HL---NAKCHACIGGTNVREDIRQLES 496
HL CIGG + + D+ ++S
Sbjct: 108 HLENNQFSIQLCIGGVSTKIDVSNIQS 134
>UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal; n=1;
Exiguobacterium sibiricum 255-15|Rep: IMP
dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal -
Exiguobacterium sibiricum 255-15
Length = 450
Score = 62.5 bits (145), Expect = 1e-08
Identities = 25/76 (32%), Positives = 49/76 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D+ +AL + +K +++DEAD+ML GF ++ + + L +Q+++ SAT
Sbjct: 127 IGTPGRILDLFKEQALKPHFVKHYIIDEADQMLDMGFLPEVDRIAQALPEKLQMMVFSAT 186
Query: 691 MPDDVLEVSRCFMRDP 738
+P+ + + +M +P
Sbjct: 187 IPEKLQPFLKKYMNNP 202
Score = 60.5 bits (140), Expect = 4e-08
Identities = 26/49 (53%), Positives = 39/49 (79%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQK 403
RD+I Q+Q+GTGKT +F + I+Q ++ ++E QA+I+APTRELA QI +
Sbjct: 40 RDIIGQSQTGTGKTLSFLLPIVQNVNPELQEMQAIIVAPTRELAWQIHE 88
>UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein;
n=62; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain MR-7)
Length = 549
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVVIALGD 424
+DV+A AQ+GTGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V G
Sbjct: 39 KDVMAAAQTGTGKTAGFTLPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGK 98
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
+L + GG + I++L GV V
Sbjct: 99 YLPLRSAVVFGGVPINPQIQKLRHGVDV 126
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ + + N +++ VLDEAD ML GF I + +L A Q ++ SAT
Sbjct: 128 VATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSAT 187
Query: 691 MPDDVLEVSRCFMRDPVPHTCT 756
D++ E+++ + PV + T
Sbjct: 188 FSDEIRELAKGLVNQPVEISVT 209
>UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=1; Hyphomonas neptunium ATCC 15444|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family -
Hyphomonas neptunium (strain ATCC 15444)
Length = 708
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 7/91 (7%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI----DTSIRECQA---LILAPTRELAQQIQKVVIA 415
RD++ A++G+GKT F ++I ++ DT + LI+APTRELA Q+ + +
Sbjct: 38 RDLLVSARTGSGKTVAFGLAIANELLGGEDTFLIRAATPLGLIIAPTRELALQVARELRW 97
Query: 416 LGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
L + NA+ C+GG ++R++ R LE G H+
Sbjct: 98 LYANTNAEIATCVGGMDMRDERRALERGAHI 128
Score = 57.2 bits (132), Expect = 4e-07
Identities = 25/75 (33%), Positives = 46/75 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ D I R + + I+ VLDEADEML GF++++ + + + + ++ SAT
Sbjct: 130 VGTPGRLVDHINRGSFDTSAIRAVVLDEADEMLDLGFREELELILEDTPKERRTLMFSAT 189
Query: 691 MPDDVLEVSRCFMRD 735
+P + ++ + ++
Sbjct: 190 VPKGIAALATRYQKN 204
>UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1;
Planctomyces maris DSM 8797|Rep: ATP-dependent RNA
helicase - Planctomyces maris DSM 8797
Length = 445
Score = 62.5 bits (145), Expect = 1e-08
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIREC-----QALILAPTRELAQQIQKVVIALG 421
RDV+ AQ+GTGKTA ++ IL Q+ + R+ AL+LAPTRELA QI A G
Sbjct: 40 RDVLGCAQTGTGKTAALALPILNQLGKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYG 99
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
HL + GG ++ L+ G H+
Sbjct: 100 RHLKLRSVLIYGGVGQGNQVKALKRGAHI 128
Score = 56.8 bits (131), Expect = 6e-07
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ + + N +++FVLDEAD ML GF + + L Q + SAT
Sbjct: 130 VATPGRLLDLMNQGHIKLNQLEVFVLDEADRMLDMGFLPDLKRIITQLPTQRQSLFFSAT 189
Query: 691 MPDDVLEVSRCFMRDPV 741
+ + E++ + PV
Sbjct: 190 LAPKITELAHSLLSKPV 206
>UniRef50_A4EAF2 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 749
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/80 (36%), Positives = 45/80 (56%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C V TPGR+ D+I + A H + +K+ VLDEAD ML GF + + + A+ Q +L
Sbjct: 189 CDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDMGFLPAVRRIVRETPAERQTLL 248
Query: 679 LSATMPDDVLEVSRCFMRDP 738
SAT+ ++ + + DP
Sbjct: 249 FSATLDEEAVGEITDLVSDP 268
Score = 36.3 bits (80), Expect = 0.83
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 24/108 (22%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQID-----TSIRECQA-------------------LI 364
RD++A AQ+GTGKTA F + + ++ +RE L+
Sbjct: 84 RDLLAAAQTGTGKTAAFLLPTMNNLEHIAPPKPVRERGGRNRRRGAKKPEGNGRGPVMLV 143
Query: 365 LAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ PTRELAQQI +V + D +GG + + L+ G +
Sbjct: 144 ITPTRELAQQIDEVAGKIADVTGHVAVTVVGGVSYKPQTAALKYGCDI 191
>UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Erythrobacter sp. NAP1
Length = 484
Score = 62.5 bits (145), Expect = 1e-08
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATF---SISILQQIDTSI--RECQALILAPTRELAQQIQKVVIALG 421
RD++ AQ+GTGKTA F SI L++ D I + C+ L+LAPTREL QI G
Sbjct: 40 RDLLGIAQTGTGKTAAFMLPSIDRLREADNRIPFKSCRMLVLAPTRELVSQIAASAKDYG 99
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
K + +GGT+V +D +L G +
Sbjct: 100 ALAGLKVQSIVGGTSVNKDRNKLHRGTDI 128
Score = 61.7 bits (143), Expect = 2e-08
Identities = 27/82 (32%), Positives = 50/82 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D+I ++A + ++++ VLDEAD+ML GF + + +++ + Q + SAT
Sbjct: 130 IATPGRLLDLIDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKERQTLFFSAT 189
Query: 691 MPDDVLEVSRCFMRDPVPHTCT 756
MP + E+ + +PV + T
Sbjct: 190 MPKAIKELVSGYCNNPVQVSVT 211
>UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=3;
Candidatus Phytoplasma|Rep: Superfamily II DNA and RNA
helicase - Onion yellows phytoplasma
Length = 552
Score = 62.1 bits (144), Expect = 1e-08
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDHLNA 436
DVI QAQ+GTGKT F I I+++I+ I++ Q+LIL PTREL Q+ +++ L +
Sbjct: 42 DVIGQAQTGTGKTFAFGIPIIEKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEI 101
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+ GG + + R LE+ H+
Sbjct: 102 RIAVVYGGESYTKQFRALEAKPHL 125
Score = 62.1 bits (144), Expect = 1e-08
Identities = 25/75 (33%), Positives = 45/75 (60%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR D + R + + +K+ LDEADEML GF++ + + K + + Q +L SAT
Sbjct: 127 IATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEERQTVLFSAT 186
Query: 691 MPDDVLEVSRCFMRD 735
+P + +++ + +D
Sbjct: 187 LPPFIKKIASKYQKD 201
>UniRef50_Q6NHC6 Cluster: Putative RNA helicase; n=2;
Corynebacterium|Rep: Putative RNA helicase -
Corynebacterium diphtheriae
Length = 452
Score = 62.1 bits (144), Expect = 1e-08
Identities = 30/82 (36%), Positives = 46/82 (56%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR D+I + L + +++ LDEAD+M GF Q+ + ++ Q + SAT
Sbjct: 129 VATPGRAQDLINQGKLSLSEVEISTLDEADQMADMGFLPQVTKLLELTPKTAQRLFFSAT 188
Query: 691 MPDDVLEVSRCFMRDPVPHTCT 756
+ DV ++ FM DPV H+ T
Sbjct: 189 LDGDVNKLVDRFMSDPVTHSTT 210
Score = 46.8 bits (106), Expect = 6e-04
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTS----IRECQALILAPTRELAQQIQKVVIALGD 424
RD++ + +G+GKT TF + ++ ++ S + + LIL PTRELA Q+++ +
Sbjct: 40 RDILGRGPTGSGKTFTFGLPMIVRLQESGVSKPSKPRGLILVPTRELAAQVRERLEEPAS 99
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
+ + +GG +++ I L S V +
Sbjct: 100 AMGLRVLEVVGGVSIKRHITSLASPVDI 127
>UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14;
Bacteria|Rep: ATP-dependent RNA helicase DeaD -
Bacteroides fragilis
Length = 427
Score = 62.1 bits (144), Expect = 1e-08
Identities = 29/76 (38%), Positives = 45/76 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D+I++ + +++ FVLDEAD ML GF I + K+L A Q + SAT
Sbjct: 126 VATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQTLFFSAT 185
Query: 691 MPDDVLEVSRCFMRDP 738
MP ++ ++ + P
Sbjct: 186 MPPEIETLANSMLTKP 201
Score = 60.5 bits (140), Expect = 4e-08
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI-DTSIRE-CQALILAPTRELAQQIQKVVIALGDHL 430
+D++ AQ+GTGKTA FSI ILQ++ T R+ +AL+L PTRELA QI + A G +
Sbjct: 39 KDLLGCAQTGTGKTAAFSIPILQKLYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYT 98
Query: 431 NAKCHACIGGTNVREDIRQLESGVHV 508
K GG + L SG+ +
Sbjct: 99 GLKHAVIFGGVGQKPQTDALRSGIQI 124
>UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
n=7; Alphaproteobacteria|Rep: Helicase-like:DEAD/DEAH
box helicase-like - Caulobacter sp. K31
Length = 542
Score = 62.1 bits (144), Expect = 1e-08
Identities = 28/76 (36%), Positives = 47/76 (61%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D + ++ H N +++FVLDEAD+ML GF I + L + Q + SAT
Sbjct: 193 VATPGRLMDHLGEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPKERQNLFFSAT 252
Query: 691 MPDDVLEVSRCFMRDP 738
MP ++ +++ +++P
Sbjct: 253 MPSEIGKLAGELLKNP 268
Score = 54.8 bits (126), Expect = 2e-06
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALG 421
RD++ AQ+GTGKTA F++ IL ++ R + L+L+PTRELA QI + G
Sbjct: 103 RDLLGIAQTGTGKTAAFALPILHRLAEDKKPAPRRGFRCLVLSPTRELATQIAESFRDYG 162
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
H+ GG ++ L +GV V
Sbjct: 163 KHMGLTVATIFGGVKYGPQMKALAAGVDV 191
>UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3;
Rhodospirillales|Rep: ATP-dependent RNA helicase -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 731
Score = 62.1 bits (144), Expect = 1e-08
Identities = 27/74 (36%), Positives = 47/74 (63%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C VGTPGR+ D + R L+ + ++ VLDEADEML GF+D++ ++ A+ + +L
Sbjct: 168 CHIVVGTPGRLCDHLGRGRLNLSRLRAVVLDEADEMLDLGFRDELEEILDATPAERRTLL 227
Query: 679 LSATMPDDVLEVSR 720
SAT+ ++ +++
Sbjct: 228 FSATIAREIAALAK 241
Score = 61.7 bits (143), Expect = 2e-08
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI---DTSIRECQA---LILAPTRELAQQIQKVVIAL 418
RD++ AQ+G+GKT + +++ + D + + A LI+APTRELA Q+Q+ ++ L
Sbjct: 81 RDLLVSAQTGSGKTVAYGLALADTLLGADERLGQAGAPLALIVAPTRELAMQVQQELLWL 140
Query: 419 GDHLNAKCHACIGGTNVREDIRQLESGVHV 508
A+ +CIGG + R + + LE G H+
Sbjct: 141 YGPAGARVVSCIGGMDARREAQALERGCHI 170
>UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein;
n=48; root|Rep: DEAD/DEAH box helicase domain protein -
Marinomonas sp. MWYL1
Length = 463
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGD 424
+DV+A AQ+GTGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V G
Sbjct: 43 QDVMAAAQTGTGKTAGFTLPLLEILSKGENAQSNQVRALVLTPTRELAAQVAESVKNYGQ 102
Query: 425 HLNAKCHACIGGTNVREDIRQLESGVHV 508
HL+ K GG + + L G +
Sbjct: 103 HLSLKSTVVFGGVKINPQMMALRRGADI 130
Score = 56.0 bits (129), Expect = 1e-06
Identities = 25/82 (30%), Positives = 48/82 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D+ ++A+ + +++ VLDEAD ML GF I + +L Q +L SAT
Sbjct: 132 IATPGRMMDLYNQKAVRFDKLEVLVLDEADRMLDMGFIHDIKKILAILPKKRQNLLFSAT 191
Query: 691 MPDDVLEVSRCFMRDPVPHTCT 756
++ ++++ + +P+ + T
Sbjct: 192 FSPEIRQLAKGLVNNPIEISVT 213
>UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box
family; n=6; Bacteria|Rep: ATP-dependent RNA helicase,
DEAD-box family - Sulfurovum sp. (strain NBC37-1)
Length = 492
Score = 62.1 bits (144), Expect = 1e-08
Identities = 30/79 (37%), Positives = 47/79 (59%)
Frame = +1
Query: 502 SCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 681
S V TPGR+ D++ + N VLDEADEML GF D+I ++F L + Q ++
Sbjct: 119 SIVVATPGRLQDLLMSGKIKLNP-HFVVLDEADEMLDMGFLDEIKNIFTFLPKERQTLMF 177
Query: 682 SATMPDDVLEVSRCFMRDP 738
SATMP+ + +++ + +P
Sbjct: 178 SATMPNGIRKLAEQILNNP 196
Score = 54.8 bits (126), Expect = 2e-06
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D+IAQAQ+GTGKTA F + I+ + + L++ PTRELA Q+ + G K
Sbjct: 40 DMIAQAQTGTGKTAAFGLPIMSMMKAD-GSVEGLVIVPTRELAMQVSDELFRFGKLSGLK 98
Query: 440 CHACIGGTNVREDIRQLE 493
GGT + I +++
Sbjct: 99 TATVYGGTAYGKQIERIK 116
>UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Desulfuromonadales|Rep: DEAD/DEAH box helicase
domain protein - Geobacter bemidjiensis Bem
Length = 482
Score = 62.1 bits (144), Expect = 1e-08
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIR-----ECQALILAPTRELAQQIQKVVIALG 421
+DV QAQ+GTGKTATF ISI ++ + + +ALILAPTREL QI+K ALG
Sbjct: 39 KDVAGQAQTGTGKTATFLISIFTKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALG 98
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ A GG + + L++G +
Sbjct: 99 KYTGFNIQAIYGGVDYMKQRDALKAGADI 127
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA--DVQVILLS 684
+GTPGR+ D + ++ ++ V+DEAD M GF + + + L Q +L S
Sbjct: 129 IGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPYDKRQNLLFS 188
Query: 685 ATMPDDVLEVSRCFMRDP 738
AT+ V+E++ FM P
Sbjct: 189 ATLNTRVMELAYEFMNMP 206
>UniRef50_Q014T4 Cluster: Chromosome 07 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 07 contig 1, DNA
sequence - Ostreococcus tauri
Length = 506
Score = 62.1 bits (144), Expect = 1e-08
Identities = 27/73 (36%), Positives = 48/73 (65%)
Frame = -1
Query: 741 YRISHKASRYFQYIIRHGSRE*YDLNIS*QHLEDIMDLVLETSGQHFISFIKNKKFDGVG 562
+R+ H+ +R + + R E +LN+ + ED++DL+LETSG+HFI F+K+K D V
Sbjct: 215 HRLGHELARDLERLRRKRRGENTNLNLRREQGEDVVDLILETSGKHFIGFVKSKDLDVVA 274
Query: 561 MKRTTSYHIIYTT 523
++ T+ H++ +T
Sbjct: 275 LQSATTKHVVNST 287
Score = 40.3 bits (90), Expect = 0.051
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = -3
Query: 505 MNTTLQLANIFTDIGATNASMAFSIQVITKSYHHLLNLLGQLSCGSQDQSLTFTNACI 332
++T+L+ A IFT+ +A +A ++V+ + H LL+LLGQL QD+ L + +
Sbjct: 294 VDTSLEDAGIFTNGRTADARVALHLKVVAEGAHDLLDLLGQLPRRRQDERLALGDGVV 351
>UniRef50_Q16T16 Cluster: DEAD box ATP-dependent RNA helicase; n=7;
Bilateria|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 741
Score = 62.1 bits (144), Expect = 1e-08
Identities = 29/77 (37%), Positives = 44/77 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D++ + +I VLDEAD ML GF+ QI + + D Q I+ SAT
Sbjct: 452 IATPGRLNDLVAANVIDITSITYLVLDEADRMLDMGFEPQIRKLLLDIRPDRQTIMTSAT 511
Query: 691 MPDDVLEVSRCFMRDPV 741
P V +++ +M +PV
Sbjct: 512 WPPGVRRLAQSYMSNPV 528
Score = 42.7 bits (96), Expect = 0.010
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTS-IRECQA------LILAPTRELAQQIQKVVIAL 418
D+I AQ+GTGKT F + I+ + +A L++APTRELA QI+K V
Sbjct: 362 DLIGIAQTGTGKTLAFLLPAFIHIEGQPVPRGEARGGPNVLVMAPTRELALQIEKEVFKY 421
Query: 419 GDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ K GG + R I +++ GV +
Sbjct: 422 -QFRDIKAICLYGGGDRRTQINKVKGGVEI 450
>UniRef50_A0C369 Cluster: Chromosome undetermined scaffold_146,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_146,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 566
Score = 62.1 bits (144), Expect = 1e-08
Identities = 26/77 (33%), Positives = 49/77 (63%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ DM+ ++ ++ + + VLDEAD ML + F+ +I ++ + + Q +L SAT
Sbjct: 254 IGTPGRISDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIRNILEHFTGPRQTMLFSAT 313
Query: 691 MPDDVLEVSRCFMRDPV 741
+P + E ++ + DP+
Sbjct: 314 LPKKIQEFTKQTLVDPL 330
Score = 34.3 bits (75), Expect = 3.4
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSI-SILQQIDTSIRECQ-------ALILAPTRELAQQIQKVVI 412
RD+I A SG GKT F + ++LQ I+ ++ ALIL P+ ELA ++
Sbjct: 155 RDIIGVAPSGQGKTLVFLLPALLQCIEEEMKMPVIRGEGPFALILLPSHELAILTYELAK 214
Query: 413 ALGDHLNAK------CHACIGGTNVREDIRQLESGVHV 508
K C IGG ++ ++ + +GVH+
Sbjct: 215 QYCQKFQKKGFPAIHCLLGIGGMDMSSQLQSIRNGVHI 252
>UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18;
Proteobacteria|Rep: ATP-dependent RNA helicase rhlB -
Pseudomonas putida (strain KT2440)
Length = 398
Score = 62.1 bits (144), Expect = 1e-08
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADVQV 672
C V TPGR+ D R +H + +++ VLDEAD ML GF Q+ + + ++ Q
Sbjct: 136 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 195
Query: 673 ILLSATMPDDVLEVSRCFMRDP 738
+L SAT DDV+ +++ + +P
Sbjct: 196 LLFSATFTDDVMNLAKQWTTNP 217
Score = 58.4 bits (135), Expect = 2e-07
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTS-------IRECQALILAPTRELAQQIQKVVIA 415
+D I +AQ+GTGKTA F ISI+ Q+ + + E +ALI+APTREL QI K A
Sbjct: 47 QDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 106
Query: 416 LGDHLNAKCHACIGGTNVREDIRQLES 496
L + + +GG + + ++ LE+
Sbjct: 107 LTKYTGLNVMSFVGGMDFDKQLKALEA 133
>UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;
n=7; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
36 - Oryza sativa subsp. japonica (Rice)
Length = 501
Score = 62.1 bits (144), Expect = 1e-08
Identities = 35/84 (41%), Positives = 48/84 (57%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
RDV+ A++G+GKTA F++ IL ++ AL LAPTRELA Q+ + ALG L
Sbjct: 115 RDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGL 174
Query: 437 KCHACIGGTNVREDIRQLESGVHV 508
+C A IGG + + L HV
Sbjct: 175 RCLAAIGGFDSLGQAKGLARRPHV 198
Score = 39.5 bits (88), Expect = 0.089
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTI---KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 681
V TPGR+ +I A K VLDEAD +L F++ + +F L Q L
Sbjct: 200 VATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKRQTFLF 259
Query: 682 SATMPDDV 705
SAT+ D++
Sbjct: 260 SATISDNL 267
>UniRef50_Q0E3X4 Cluster: DEAD-box ATP-dependent RNA helicase 35A;
n=50; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
35A - Oryza sativa subsp. japonica (Rice)
Length = 627
Score = 62.1 bits (144), Expect = 1e-08
Identities = 27/77 (35%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ ++ ++ + + LDEAD ++ GF+D I +VF A Q +L SAT
Sbjct: 319 VATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSAT 378
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + ++ + PV
Sbjct: 379 MPKKIQNFAKSALVKPV 395
Score = 35.9 bits (79), Expect = 1.1
Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 14/98 (14%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQA---LILAPTRELAQQ----IQ 400
RD+I A +G+GKT F + ++ +++ I + +I+ P+RELA+Q I+
Sbjct: 220 RDMIGIAFTGSGKTLVFVLPLIMVALQEEMMMPIVPGEGPFGMIICPSRELAKQTYDVIE 279
Query: 401 KVVIALGD--HLNAKCHACIGGTNVREDIRQLESGVHV 508
+ ++ L + + + CIGG ++R + ++ GVH+
Sbjct: 280 QFLVPLKEAGYPEIRPLLCIGGVDMRAQLDVVKKGVHI 317
>UniRef50_P20449 Cluster: ATP-dependent RNA helicase DBP5; n=23;
Dikarya|Rep: ATP-dependent RNA helicase DBP5 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 482
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSA 687
VGTPG V D++ R+ + IK+FVLDEAD ML +G DQ V + L D Q++L SA
Sbjct: 213 VGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSA 272
Query: 688 TMPDDVLEVSR 720
T D V + ++
Sbjct: 273 TFADAVRQYAK 283
Score = 60.9 bits (141), Expect = 3e-08
Identities = 29/58 (50%), Positives = 44/58 (75%)
Frame = +2
Query: 248 HPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 421
+P R++IAQ+QSGTGKTA FS+++L +++ QA+ LAP+RELA+Q +VV +G
Sbjct: 129 NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMG 186
Score = 43.6 bits (98), Expect = 0.005
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = +3
Query: 144 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
++FD++ L ELL+GIYA F+KPS IQ+RA+
Sbjct: 92 KSFDELGLAPELLKGIYAMKFQKPSKIQERAL 123
>UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n=1;
unknown|Rep: UPI00015BD198 UniRef100 entry - unknown
Length = 364
Score = 61.7 bits (143), Expect = 2e-08
Identities = 27/79 (34%), Positives = 51/79 (64%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D++ QA +GTGKT F+I I++++ + +AL+L PTRELA Q+++ + L +
Sbjct: 39 DILGQAATGTGKTGAFAIPIVEKLQKGKPDVKALVLTPTRELAIQVKEQIYMLTKYKRLS 98
Query: 440 CHACIGGTNVREDIRQLES 496
+ GGT+V++++ L++
Sbjct: 99 SYVFYGGTSVKQNLDILQN 117
Score = 59.7 bits (138), Expect = 8e-08
Identities = 26/74 (35%), Positives = 46/74 (62%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+GTPGR+ D+I R+AL+ + ++ VLDE D+ML GF + I + L + + SAT
Sbjct: 124 IGTPGRIKDLIDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEYIISFLPKERTTYMFSAT 183
Query: 691 MPDDVLEVSRCFMR 732
+P + +++ F++
Sbjct: 184 VPSRIELLAKRFLK 197
>UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2;
Desulfitobacterium hafniense|Rep: DEAD/DEAH box
helicase-like - Desulfitobacterium hafniense (strain
DCB-2)
Length = 425
Score = 61.7 bits (143), Expect = 2e-08
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALG 421
D++ AQ+GTGKTA F+I ILQ + R+ +AL+LAPTRELA QI + A G
Sbjct: 40 DLLGCAQTGTGKTAAFAIPILQSLAMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYG 99
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
+L + GG R+LE G+ +
Sbjct: 100 VNLPLRTLVIFGGVGQAPQTRKLEKGIDI 128
Score = 55.2 bits (127), Expect = 2e-06
Identities = 26/77 (33%), Positives = 45/77 (58%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D+I + + + ++ FVLDE D+ML G + + L + Q +L SAT
Sbjct: 130 VATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFSAT 189
Query: 691 MPDDVLEVSRCFMRDPV 741
MP ++ +++ ++ PV
Sbjct: 190 MPVEIEKLADTILKGPV 206
>UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=16;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013)
Length = 433
Score = 61.7 bits (143), Expect = 2e-08
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Frame = +2
Query: 242 ALHPRRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKV 406
A+ DV+A AQ+GTGKTA F++ ILQ++ Q ALIL PTRELA Q+
Sbjct: 34 AIRRGEDVLASAQTGTGKTAAFALPILQKMHERPMTVQHSNARALILTPTRELAAQVADN 93
Query: 407 VIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ A H+N GG + ++L+ G +
Sbjct: 94 ISAYSKHMNISVLTIYGGMKMATQAQKLKQGADI 127
Score = 47.6 bits (108), Expect = 3e-04
Identities = 25/76 (32%), Positives = 39/76 (51%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ + I L + ++ VLDEAD ML GF I + + ++ Q +L SAT
Sbjct: 129 VATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQNLLFSAT 188
Query: 691 MPDDVLEVSRCFMRDP 738
V +++ + P
Sbjct: 189 FSTAVKKLANDMLDKP 204
>UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box
helicase, n-terminal; n=3; Bacteria|Rep: HeliCase,
c-terminal:dead/deah box helicase, n-terminal -
Stigmatella aurantiaca DW4/3-1
Length = 608
Score = 61.7 bits (143), Expect = 2e-08
Identities = 28/77 (36%), Positives = 42/77 (54%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR D + R+ L +++ VLDEADEML GF + + + Q L SAT
Sbjct: 162 VATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQTALFSAT 221
Query: 691 MPDDVLEVSRCFMRDPV 741
+P + ++ +R+PV
Sbjct: 222 LPPRIASIAERHLREPV 238
Score = 59.3 bits (137), Expect = 1e-07
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRE---CQALILAPTRELAQQIQKVVIALGDH 427
+D++ A +GTGKTA FS+ +LQ+I AL+L PTRELA Q+ + + G
Sbjct: 74 KDLLGIAATGTGKTAAFSLPLLQRITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQK 133
Query: 428 LNAKCHACIGGTNVREDIRQLESGVHV 508
L GG + + +R L+ GV V
Sbjct: 134 LGISVVPLYGGQVISQQLRVLKRGVDV 160
Score = 33.1 bits (72), Expect = 7.8
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +3
Query: 78 GSYDGPPG-MDPGTLDT---DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 245
G D PPG +D T + + TF+ + L L+ + A G+E+P+ IQ+ A+ P
Sbjct: 10 GRCDFPPGGIDGATSPSTVKETSAADNTFESLGLLPPLVEALSALGYEEPTPIQRAALPP 69
Query: 246 CIQ 254
++
Sbjct: 70 LLE 72
>UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Acidiphilium cryptum JF-5|Rep: DEAD/DEAH box
helicase domain protein - Acidiphilium cryptum (strain
JF-5)
Length = 525
Score = 61.7 bits (143), Expect = 2e-08
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKVVIALGD 424
D++ AQ+GTGKTA F + IL +I + R C+AL+LAPTRELA QI G
Sbjct: 96 DLVGIAQTGTGKTAAFVLPILHRIAANRARPAPRACRALVLAPTRELATQIADAARTYGK 155
Query: 425 HLNAKCHACIGGTNVREDIRQLESGV 502
IGG R++ESGV
Sbjct: 156 FTRPSVAVVIGGAKPGPQARRMESGV 181
Score = 60.1 bits (139), Expect = 6e-08
Identities = 28/76 (36%), Positives = 42/76 (55%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D + + + ++ VLDEAD+ML GF I + L Q ++ SAT
Sbjct: 185 VATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQAVMFSAT 244
Query: 691 MPDDVLEVSRCFMRDP 738
MP + ++ F+RDP
Sbjct: 245 MPKPIRALAGEFLRDP 260
>UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=4;
Neisseria|Rep: Putative ATP-dependent RNA helicase -
Neisseria meningitidis serogroup C / serotype 2a (strain
ATCC 700532 /FAM18)
Length = 483
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/80 (36%), Positives = 45/80 (56%)
Frame = +1
Query: 499 CSCXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 678
C V T GR+ D + ++ + N +++ VLDEAD ML GF D I + +ML Q +L
Sbjct: 156 CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLL 215
Query: 679 LSATMPDDVLEVSRCFMRDP 738
SAT + ++++ FM P
Sbjct: 216 FSATFSAPIRKLAQDFMNAP 235
Score = 48.4 bits (110), Expect = 2e-04
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQIQKVVIA 415
D++A AQ+GTGKTA F + L+++ ++ + L+L PTRELA QI + V +
Sbjct: 68 DLLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQS 127
Query: 416 LGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
+L + GG N+ + L +G +
Sbjct: 128 YIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 158
>UniRef50_Q012T2 Cluster: DEAD-box protein abstrakt; n=3;
Ostreococcus|Rep: DEAD-box protein abstrakt -
Ostreococcus tauri
Length = 1025
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 687
+GTPGR+ D++++ L + + VLDEAD ML GF+ QI +F A Q +L SA
Sbjct: 171 IGTPGRLTDLMSQEGVLSLEKLSVIVLDEADRMLDMGFEPQIKTIFGATPASRQTLLFSA 230
Query: 688 TMPDDVLEVSRCFM 729
T P V +++ C++
Sbjct: 231 TWPKSVRKLAACYL 244
Score = 33.5 bits (73), Expect = 5.9
Identities = 26/79 (32%), Positives = 34/79 (43%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
DV+A A++G+GKT F + L++APTRELA QIQ G
Sbjct: 92 DVVAVAKTGSGKTLAFHGM------KKHGGVEGLVVAPTRELAIQIQAECEKFGAERGFH 145
Query: 440 CHACIGGTNVREDIRQLES 496
GG + E L S
Sbjct: 146 SVVVYGGASAYEQKNALRS 164
>UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 407
Score = 61.7 bits (143), Expect = 2e-08
Identities = 40/93 (43%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL------- 418
DVIAQA+SGTGKT TF + L+++D R QAL LAPTRE A Q + + +
Sbjct: 76 DVIAQAKSGTGKTMTFVVIALERVDAGRRRTQALALAPTRECAVQTHECFVEMIEKFKDM 135
Query: 419 -GDHLNAKCHAC--IGGTNVREDIRQLESGVHV 508
GD C +GG V+ED +L S HV
Sbjct: 136 DGD-ARGGIETCLLVGGLPVKEDRARLASQPHV 167
Score = 47.2 bits (107), Expect = 4e-04
Identities = 27/76 (35%), Positives = 38/76 (50%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR M+ ++ + +L +LDEAD +LS F+ + + ML QV SAT
Sbjct: 169 VGTPGRTRQMLEEGSMACDGARLLILDEADALLSGTFERDVLFAYSMLPERKQVCAFSAT 228
Query: 691 MPDDVLEVSRCFMRDP 738
+L MR P
Sbjct: 229 YSKTLLGDLERLMRAP 244
>UniRef50_A7RGX3 Cluster: Predicted protein; n=3; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 487
Score = 61.7 bits (143), Expect = 2e-08
Identities = 26/77 (33%), Positives = 44/77 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ +R + + + VLDEAD M+ GF++ + +F + Q +L SAT
Sbjct: 184 VATPGRLMDLLDKRIITLDVCRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSAT 243
Query: 691 MPDDVLEVSRCFMRDPV 741
MP + ++ + PV
Sbjct: 244 MPKKIQNFAKSALVKPV 260
Score = 41.9 bits (94), Expect = 0.017
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 14/98 (14%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQA---LILAPTRELAQQIQKVVI 412
RD+I A +G+GKT F++ I+ Q+ + + +I+ P+RELA+Q +V+
Sbjct: 85 RDMIGIAFTGSGKTLVFTLPIIMFSLEQEKAMPFQRNEGPYGMIVVPSRELARQTFEVIT 144
Query: 413 ALGDHLNA------KCHACIGGTNVREDIRQLESGVHV 508
L A + + CIGG++++E ++ GVH+
Sbjct: 145 HFSRALEAHGFPSLRTNLCIGGSSIKEQSDAMKRGVHM 182
>UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3;
Methanosarcinaceae|Rep: DEAD-box RNA helicase -
Methanococcoides burtonii
Length = 522
Score = 61.7 bits (143), Expect = 2e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D I R + +++ VLDEAD ML GF D + ++ +D Q ++ SAT
Sbjct: 123 VATPGRLLDHIERGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDECPSDRQTMMFSAT 182
Query: 691 MPDDVLEVSRCFMRDP 738
+ D+ +S +M +P
Sbjct: 183 VSKDIQYLSSKYMNNP 198
Score = 59.3 bits (137), Expect = 1e-07
Identities = 30/79 (37%), Positives = 44/79 (55%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 436
+D+I A +G+GKT F I+Q+I+ +AL+L PTRELA+Q+Q + H
Sbjct: 40 KDIIGGAATGSGKTLAFGCGIIQKIEKG-NGIRALVLTPTRELAEQVQNSLKEFSRHKQL 98
Query: 437 KCHACIGGTNVREDIRQLE 493
+ GG + IRQLE
Sbjct: 99 RVAPIYGGVAINPQIRQLE 117
>UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82;
Eukaryota|Rep: ATP-dependent RNA helicase WM6 -
Drosophila melanogaster (Fruit fly)
Length = 424
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKMLSADVQVILLSA 687
VGTPGR+ +I + L+ +K FVLDE D+ML + + + ++F+ QV++ SA
Sbjct: 167 VGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSA 226
Query: 688 TMPDDVLEVSRCFMRDPV 741
T+ D+ V + FM+DP+
Sbjct: 227 TLSKDIRPVCKKFMQDPM 244
Score = 56.0 bits (129), Expect = 1e-06
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHL-N 433
D++ QA+SG GKTA F ++ LQQ++ S C L++ TRELA QI K ++
Sbjct: 80 DILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPT 139
Query: 434 AKCHACIGGTNVREDIRQLESG 499
K GG +++D L+SG
Sbjct: 140 VKVAVFFGGMAIQKDEETLKSG 161
>UniRef50_Q4P9E5 Cluster: ATP-dependent rRNA helicase SPB4; n=2;
Ustilago maydis|Rep: ATP-dependent rRNA helicase SPB4 -
Ustilago maydis (Smut fungus)
Length = 767
Score = 61.7 bits (143), Expect = 2e-08
Identities = 27/77 (35%), Positives = 50/77 (64%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
VGTPGR+ ++++++ + +++++ VLDEAD +L GF + + + +L + L SAT
Sbjct: 213 VGTPGRLEELLSKKGVKKSSLEVLVLDEADRLLDLGFTENLRRILSLLPKQRRTGLFSAT 272
Query: 691 MPDDVLEVSRCFMRDPV 741
M D + E+ R +R+PV
Sbjct: 273 MTDALSELVRIGLRNPV 289
Score = 49.2 bits (112), Expect = 1e-04
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI---DTSIR--ECQALILAPTRELAQQIQKVVIALG 421
+DV+ +A +G+GKT F I +L+ + T ++ E ALI++PTRELA+QI KV++
Sbjct: 66 KDVVVEAVTGSGKTLAFVIPVLEMLARRTTRLKKDEVGALIVSPTRELAEQIYKVLVMF- 124
Query: 422 DHLNAKCHACIGGTNVREDIRQLE 493
L+A+ HA + ++ Q E
Sbjct: 125 --LDAQNHAHVQAQQQQDQDEQDE 146
>UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX27;
n=34; Bilateria|Rep: Probable ATP-dependent RNA helicase
DDX27 - Homo sapiens (Human)
Length = 796
Score = 61.7 bits (143), Expect = 2e-08
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 687
+ TPGR+ D + + H ++I++ +LDEAD ML F++Q+ ++ +M S Q +L SA
Sbjct: 344 IATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSA 403
Query: 688 TMPDDVLEVSRCFMRDPV 741
TM D+V +++ +++PV
Sbjct: 404 TMTDEVKDLASVSLKNPV 421
Score = 50.4 bits (115), Expect = 5e-05
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSIREC---QALILAPTRELAQQIQKVVIALGDH 427
+D+ A A +GTGKTA F++ +L+++ R+ + L+L PTREL Q+ V L
Sbjct: 256 KDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQF 315
Query: 428 LNAKCHACIGGTNVR 472
N +GG +V+
Sbjct: 316 CNITTCLAVGGLDVK 330
Score = 35.9 bits (79), Expect = 1.1
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 99 GMDPGTLDTDWDQVVE--TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 239
G + G D Q E +F DMNL LL+ I A GF++P+ IQ+ I
Sbjct: 201 GQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACI 249
>UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20;
Ascomycota|Rep: ATP-dependent RNA helicase DBP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 523
Score = 61.7 bits (143), Expect = 2e-08
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV-QVILLSA 687
V TPGR+ D++ ++ + + VLDEAD ML +GF++ I ++ + A Q ++ +A
Sbjct: 236 VATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTA 295
Query: 688 TMPDDVLEVSRCFMRDPV 741
T P +V E++ FM +P+
Sbjct: 296 TWPKEVRELASTFMNNPI 313
Score = 54.0 bits (124), Expect = 4e-06
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHL 430
+DV+ A++G+GKT F + + + D R Q L+++PTRELA QI +I L D +
Sbjct: 150 KDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKV 209
Query: 431 NAKCHACIGGTNVREDIRQLE 493
+C GG E QL+
Sbjct: 210 GMQCCCVYGGVPKDEQRIQLK 230
>UniRef50_UPI00015609AE Cluster: PREDICTED: similar to DEAD
(Asp-Glu-Ala-Asp) box polypeptide 53; n=2; Equus
caballus|Rep: PREDICTED: similar to DEAD
(Asp-Glu-Ala-Asp) box polypeptide 53 - Equus caballus
Length = 711
Score = 61.3 bits (142), Expect = 3e-08
Identities = 26/77 (33%), Positives = 48/77 (62%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D+ + ++ +I VLDEAD+ML GF+ QI + + D Q ++ SAT
Sbjct: 433 IATPGRLNDLQMNKCVNLRSITYLVLDEADKMLDLGFEGQITKILLDVRPDRQTVMTSAT 492
Query: 691 MPDDVLEVSRCFMRDPV 741
P + +++R ++++P+
Sbjct: 493 WPHTIRQLARSYLKEPM 509
Score = 41.5 bits (93), Expect = 0.022
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTS--IRECQ----ALILAPTRELAQQIQKVVIALG 421
D+I AQ+GTGKT ++ I +D+ RE + L+L PTRELA Q++ +
Sbjct: 344 DLIGVAQTGTGKTLSYLIPGFIHLDSQPISREERNGPGMLVLTPTRELALQVE-AECSKY 402
Query: 422 DHLNAKCHACIGGTNVREDIRQLESGVHV 508
+ K GG N +E I+ + GV +
Sbjct: 403 SYKGLKSVCVYGGGNRKEQIQHITKGVDI 431
>UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59;
Betaproteobacteria|Rep: ATP-dependent RNA helicase RhlE
- Burkholderia mallei (Pseudomonas mallei)
Length = 482
Score = 61.3 bits (142), Expect = 3e-08
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQ----QIDTSIRECQ----ALILAPTRELAQQIQKVVI 412
RDV+ AQ+GTGKTA+FS+ I+Q Q +TS + ALIL PTRELA Q+ V
Sbjct: 49 RDVMGAAQTGTGKTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVH 108
Query: 413 ALGDHLNAKCHACIGGTNVREDIRQLESGVHV 508
A H + GG ++ + +L GV +
Sbjct: 109 AYAKHTPLRSAVVFGGVDMNPQMAELRRGVEI 140
Score = 58.4 bits (135), Expect = 2e-07
Identities = 23/76 (30%), Positives = 45/76 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
+ TPGR+ D + ++ + +++ VLDEAD ML GF + + +L + Q +L SAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201
Query: 691 MPDDVLEVSRCFMRDP 738
++ +++ ++R+P
Sbjct: 202 FSPEIKKLASTYLRNP 217
>UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase
DbpA; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to ATP-independent RNA helicase DbpA -
Candidatus Kuenenia stuttgartiensis
Length = 407
Score = 61.3 bits (142), Expect = 3e-08
Identities = 29/76 (38%), Positives = 45/76 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR+ D++ L IK +LDEADE+L GF + I + + Q +L SAT
Sbjct: 124 VATPGRLIDLLYEGILSFARIKCVILDEADELLKVGFLEDIEFILSCIRHKHQTLLFSAT 183
Query: 691 MPDDVLEVSRCFMRDP 738
MPDD+ ++++ + +P
Sbjct: 184 MPDDIKKLTQDCLHEP 199
Score = 54.8 bits (126), Expect = 2e-06
Identities = 26/83 (31%), Positives = 48/83 (57%)
Frame = +2
Query: 260 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 439
D+ A A++G+GKTA +I ++Q++D S+ Q L++ PTREL Q + + + +
Sbjct: 40 DLCALAETGSGKTAACAIPLIQKVDPSLDAIQGLVIVPTRELCMQYVEEIRKIAAKTDVI 99
Query: 440 CHACIGGTNVREDIRQLESGVHV 508
+A GG + I +++ VH+
Sbjct: 100 PYAVYGGFDRAAQIARVKQTVHI 122
>UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=3;
Thermus thermophilus|Rep: Heat resistant RNA dependent
ATPase - Thermus thermophilus
Length = 510
Score = 61.3 bits (142), Expect = 3e-08
Identities = 28/77 (36%), Positives = 46/77 (59%)
Frame = +1
Query: 511 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSAT 690
V TPGR D + + L + +++ VLDEADEMLS GF++++ + Q +L SAT
Sbjct: 125 VATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSAT 184
Query: 691 MPDDVLEVSRCFMRDPV 741
+P ++ +M++PV
Sbjct: 185 LPSWAKRLAERYMKNPV 201
Score = 54.0 bits (124), Expect = 4e-06
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Frame = +2
Query: 257 RDVIAQAQSGTGKTATFSISILQQIDTSI---RECQALILAPTRELAQQIQKVVIALGDH 427
+D+I QA++GTGKT F++ I +++ S R+ +AL+L PTRELA Q+ + A+ H
Sbjct: 39 KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98
Query: 428 LNAKCHACIGGT 463
L K A GGT
Sbjct: 99 L--KVVAVYGGT 108
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 844,562,030
Number of Sequences: 1657284
Number of extensions: 18449061
Number of successful extensions: 54781
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 50347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53999
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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